Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 4.5e-112 407.9 201 100.0
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 7.7e-72 274.2 204 71.6
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 4.7e-61 238.4 204 65.2
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 2.2e-58 229.6 204 63.2
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 3.7e-58 228.8 204 61.8
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 8.3e-58 227.6 203 64.0
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 8.3e-58 227.6 203 64.0
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 1.8e-57 226.5 206 62.1
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 4.1e-57 225.3 203 62.1
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 5.4e-57 224.9 138 76.1
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 1.6e-56 223.4 203 62.6
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 2.0e-56 223.0 178 65.7
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 2.0e-56 223.0 190 64.2
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 2.7e-56 222.6 119 84.9
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 3.5e-56 222.2 209 59.3
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 3.5e-56 222.2 198 62.6
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 4.5e-56 221.9 204 60.3
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 5.9e-56 221.5 198 62.6
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 7.8e-56 221.1 202 59.9
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.3e-55 220.3 204 59.8
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.7e-55 219.9 199 58.3
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 2.3e-55 219.5 182 64.8
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 2.3e-55 219.5 186 63.4
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.3e-55 219.5 204 59.8
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 2.3e-55 219.5 187 63.1
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 2.9e-55 219.2 154 71.4
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 2.9e-55 219.2 173 65.9
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.9e-55 219.2 168 69.6
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 2.9e-55 219.2 158 71.5
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 3.8e-55 218.8 201 60.7
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 5.0e-55 218.4 128 78.1
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 5.0e-55 218.4 148 73.6
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 1.1e-54 217.2 117 81.2
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 1.1e-54 217.2 203 58.1
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 3.3e-54 215.7 182 65.4
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 3.3e-54 215.7 177 65.0
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 3.3e-54 215.7 191 62.3
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 4.3e-54 215.3 176 65.9
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 4.3e-54 215.3 203 59.1
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 4.3e-54 215.3 141 73.8
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 1.2e-53 213.8 196 62.8
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 1.6e-53 213.4 187 62.6
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 2.8e-53 212.6 155 69.7
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 3.6e-53 212.2 203 58.1
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 4.7e-53 211.8 201 57.7
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 4.7e-53 211.8 179 63.1
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 6.1e-53 211.5 113 85.8
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 6.1e-53 211.5 185 62.2
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 6.1e-53 211.5 193 62.2
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 1.0e-52 210.7 174 66.7
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 1.4e-52 210.3 197 59.4
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 1.4e-52 210.3 172 65.7
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 3.1e-52 209.1 200 58.5
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 5.2e-52 208.4 174 63.2
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 8.9e-52 207.6 113 79.6
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 8.9e-52 207.6 113 79.6
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 8.9e-52 207.6 113 79.6
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 8.9e-52 207.6 171 63.7
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 8.9e-52 207.6 182 60.4
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 1.2e-51 207.2 195 60.0
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 1.2e-51 207.2 109 84.4
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 1.5e-51 206.8 181 59.7
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.5e-51 206.8 133 74.4
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 1.5e-51 206.8 200 58.0
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 2.0e-51 206.5 172 62.2
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 2.0e-51 206.5 155 67.1
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 2.0e-51 206.5 131 74.0
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 2.6e-51 206.1 174 61.5
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 2.6e-51 206.1 174 61.5
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 3.4e-51 205.7 179 61.5
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 4.4e-51 205.3 158 66.5
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 1.3e-50 203.8 185 58.4
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 1.7e-50 203.4 168 62.5
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 2.2e-50 203.0 195 61.0
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.9e-50 202.6 143 67.8
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 4.9e-50 201.8 156 66.0
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 4.9e-50 201.8 192 59.9
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 6.4e-50 201.4 194 60.3
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 4.1e-49 198.7 196 57.7
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 4.1e-49 198.7 191 56.5
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 7.0e-49 198.0 193 56.0
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 1.2e-48 197.2 110 80.9
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 2.7e-48 196.1 202 55.0
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 6.0e-48 194.9 156 64.7
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 6.0e-48 194.9 139 64.7
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 1.3e-47 193.7 114 78.9
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 1.7e-47 193.4 196 55.6
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 2.3e-47 193.0 140 65.7
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 2.3e-47 193.0 184 58.2
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 6.6e-47 191.4 199 53.3
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 1.6e-45 186.8 114 75.4
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 1.4e-44 183.7 111 77.5
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 6.8e-44 181.4 195 55.4
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 2.2e-42 176.4 223 51.6
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 2.1e-40 169.9 103 71.8
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 1.9e-38 163.3 140 60.7
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.9e-38 163.3 140 60.7
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 2.8e-37 159.5 96 74.0
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 2.3e-36 156.4 121 58.7
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 2.0e-35 153.3 156 50.6
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 2.6e-35 152.9 139 55.4
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 5.8e-35 151.8 121 59.5
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 4.9e-34 148.7 172 45.9
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 6.4e-34 148.3 108 61.1
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 1.1e-33 147.5 142 53.5
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 1.1e-33 147.5 125 54.4
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.1e-33 147.5 136 55.9
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 1.1e-33 147.5 137 54.7
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 1.9e-33 146.7 138 55.1
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 2.4e-33 146.4 144 52.8
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 4.1e-33 145.6 132 53.0
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 7.1e-33 144.8 140 52.1
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 9.2e-33 144.4 109 60.6
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 9.2e-33 144.4 120 54.2
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 1.2e-32 144.1 111 60.4
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 1.6e-32 143.7 172 50.6
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 2.1e-32 143.3 168 45.2
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 2.1e-32 143.3 107 60.7
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 6.0e-32 141.7 145 49.0
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 6.0e-32 141.7 120 55.0
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 7.8e-32 141.4 136 51.5
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.0e-31 141.0 133 51.9
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 1.7e-31 140.2 170 44.1
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.3e-31 139.8 156 48.1
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 3.0e-31 139.4 143 49.7
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 3.9e-31 139.0 141 51.1
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 6.6e-31 138.3 133 49.6
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 6.6e-31 138.3 133 49.6
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 8.6e-31 137.9 116 55.2
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 8.6e-31 137.9 122 54.9
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 8.6e-31 137.9 120 52.5
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 3.3e-30 136.0 128 51.6
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 5.6e-30 135.2 104 59.6
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 7.3e-30 134.8 132 48.5
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 9.5e-30 134.4 130 55.4
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 9.5e-30 134.4 117 53.0
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 1.2e-29 134.0 112 57.1
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 3.6e-29 132.5 105 52.4
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 3.6e-29 132.5 63 93.7
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 3.6e-29 132.5 157 44.6
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 4.7e-29 132.1 148 46.6
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.4e-28 130.6 150 47.3
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 1.4e-28 130.6 105 57.1
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 1.8e-28 130.2 63 88.9
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 6.8e-28 128.3 108 53.7
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 1.2e-27 127.5 122 51.6
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 1.2e-27 127.5 94 62.8
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 5.8e-27 125.2 165 43.0
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.3e-26 124.0 153 44.4
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 3.8e-26 122.5 167 42.5
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 8.4e-26 121.3 115 48.7
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 2.4e-25 119.8 102 57.8
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 3.2e-25 119.4 106 51.9
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 4.2e-25 119.0 124 46.0
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 4.2e-25 119.0 97 55.7
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 9.2e-25 117.9 105 50.5
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 2.7e-24 116.3 116 51.7
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 1.7e-23 113.6 143 42.7
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 2.3e-23 113.2 143 42.7
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 8.1e-21 104.8 191 40.8
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 8.1e-21 104.8 135 43.0
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 1.1e-20 104.4 98 58.2
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 1.8e-20 103.6 222 31.5
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 2.4e-20 103.2 56 76.8
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 2.0e-19 100.1 59 72.9
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 3.4e-19 99.4 91 51.6
TPR.G39492 Trifolium pratense HOM05D003884 ORTHO05D004482 2.2e-18 96.7 128 50.8
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 8.4e-18 94.7 245 28.6
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 2.1e-16 90.1 59 64.4
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 2.0e-11 73.6 75 48.0
AagrBONN_evm.TU.Sc2ySwM_368.3177 Anthoceros agrestis HOM05D003884 ORTHO05D004482 9.9e-11 71.2 95 37.9
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 4.2e-09 65.9 47 63.8
Oeu001664.1 Olea europaea HOM05D003884 ORTHO05D004482 7.1e-09 65.1 63 49.2
Medtr7g101780 Medicago truncatula HOM05D001475 ORTHO05D001525 1.8e-07 60.5 43 62.8
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 1.8e-07 60.5 47 61.7
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 3.9e-07 59.3 86 41.9
AUR62005315 Chenopodium quinoa HOM05D003884 ORTHO05D004482 2.5e-06 56.6 47 53.2
Lalb_Chr05g0217181 Lupinus albus HOM05D003884 ORTHO05D004482 4.3e-06 55.8 60 46.7


User provided reference genes

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