Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 2.6e-271 938.3 557 100.0
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 2.3e-174 616.3 534 74.5
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 1.7e-169 600.1 549 72.7
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 3.2e-168 595.9 550 70.7
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 1.3e-166 590.5 533 71.7
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 7.7e-162 574.7 548 67.9
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 6.1e-159 565.1 553 68.0
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 8.8e-158 561.2 551 68.2
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 1.5e-157 560.5 566 67.7
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 1.4e-150 537.3 549 58.5
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 1.5e-149 533.9 559 63.1
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 1.3e-148 530.8 547 65.6
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 1.3e-148 530.8 545 65.3
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 1.7e-148 530.4 555 64.0
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 2.2e-148 530.0 543 65.7
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 2.2e-148 530.0 557 65.5
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 8.2e-148 528.1 566 60.8
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 1.8e-147 526.9 563 63.9
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 1.3e-145 520.8 544 57.0
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 2.2e-145 520.0 524 66.8
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 3.8e-145 519.2 578 63.1
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 6.5e-145 518.5 580 64.0
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 6.5e-145 518.5 541 65.4
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.1e-144 517.7 542 61.4
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.5e-144 517.3 553 64.2
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 7.2e-144 515.0 551 59.7
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 8.0e-143 511.5 536 61.8
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 2.3e-142 510.0 558 63.8
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 5.2e-142 508.8 538 64.3
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 5.2e-142 508.8 542 65.5
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 6.7e-142 508.4 550 65.5
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 1.1e-141 507.7 542 62.4
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.1e-141 507.7 582 61.2
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 2.0e-141 506.9 569 62.6
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 2.6e-141 506.5 550 63.5
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 4.4e-141 505.8 571 61.8
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 1.3e-140 504.2 547 63.3
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 1.7e-140 503.8 538 63.9
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.7e-140 503.8 580 61.7
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 1.4e-139 500.7 567 63.7
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 1.8e-139 500.4 537 61.8
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 2.4e-139 500.0 548 62.0
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 5.3e-139 498.8 544 63.6
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 5.3e-139 498.8 531 62.0
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 2.7e-138 496.5 540 60.9
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 4.5e-138 495.7 543 62.4
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 3.8e-137 492.7 529 57.1
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 1.5e-136 490.7 544 61.6
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 2.5e-136 490.0 548 60.9
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 3.2e-136 489.6 569 61.3
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 4.2e-136 489.2 542 64.8
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 5.5e-136 488.8 546 61.5
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 1.2e-135 487.6 548 61.5
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 2.1e-135 486.9 540 60.4
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 1.0e-134 484.6 542 62.9
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.4e-134 484.2 560 60.0
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 8.8e-134 481.5 542 61.4
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 1.2e-133 481.1 542 64.2
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 3.4e-133 479.6 628 55.9
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 9.8e-133 478.0 542 64.2
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 2.2e-132 476.9 533 55.3
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 3.7e-132 476.1 554 59.7
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 3.7e-132 476.1 567 54.7
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 3.1e-131 473.0 548 63.0
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 5.4e-131 472.2 536 61.6
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 7.0e-131 471.9 547 61.8
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 7.7e-130 468.4 555 61.3
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 7.7e-130 468.4 557 59.4
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 7.7e-130 468.4 546 60.8
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 2.9e-129 466.5 564 56.7
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 3.8e-129 466.1 553 61.5
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 3.8e-129 466.1 533 60.8
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 8.5e-129 464.9 534 60.1
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 8.5e-129 464.9 534 60.7
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 1.1e-128 464.5 546 59.9
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 5.5e-128 462.2 550 61.1
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 1.2e-127 461.1 611 57.9
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 6.1e-127 458.8 538 59.9
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 8.0e-127 458.4 538 59.5
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 1.0e-126 458.0 534 53.9
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 1.4e-126 457.6 537 59.2
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 2.3e-126 456.8 535 61.1
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 1.7e-124 450.7 582 56.5
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 2.2e-124 450.3 537 59.0
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.8e-124 449.9 534 62.0
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 4.9e-124 449.1 551 56.3
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.4e-123 446.8 532 61.7
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 4.1e-123 446.0 595 55.1
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 1.2e-122 444.5 550 58.7
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 4.5e-122 442.6 535 57.9
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 4.5e-122 442.6 573 53.8
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.3e-121 441.0 536 59.3
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.3e-121 441.0 548 58.9
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 1.7e-121 440.7 573 57.9
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.7e-121 440.7 542 56.1
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 5.6e-120 435.6 539 54.2
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 2.8e-119 433.3 564 58.0
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 2.8e-119 433.3 538 58.9
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 1.8e-118 430.6 547 55.9
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 2.9e-116 423.3 503 51.9
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 1.4e-115 421.0 525 50.5
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 2.0e-114 417.2 537 53.3
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 1.6e-111 407.5 545 51.9
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 2.9e-108 396.7 473 59.6
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 3.7e-108 396.4 557 53.0
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 4.9e-108 396.0 550 52.7
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 2.7e-106 390.2 517 55.5
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 1.3e-97 361.3 363 66.1
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 2.1e-95 354.0 585 51.6
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 2.4e-91 340.5 352 63.6
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 5.2e-86 322.8 554 49.3
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 2.0e-85 320.9 371 54.4
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 2.2e-84 317.4 517 47.4
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 1.7e-81 307.8 522 41.8
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 1.3e-79 301.6 550 45.6
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 4.9e-76 289.7 493 44.8
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 7.1e-75 285.8 489 42.7
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 5.8e-69 266.2 581 37.3
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 4.0e-62 243.4 161 80.1
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 2.5e-59 234.2 206 64.6
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 4.6e-58 229.9 351 54.7
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 1.8e-57 228.0 148 80.4
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 4.3e-56 223.4 266 54.5
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 2.2e-52 211.1 125 90.4
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 4.2e-51 206.8 241 50.6
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 1.3e-49 201.8 241 49.4
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.1e-46 192.2 377 48.8
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 2.0e-45 188.0 267 49.8
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 3.3e-40 170.6 191 54.5
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 3.3e-40 170.6 191 54.5
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 5.5e-35 153.3 237 40.1
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 3.1e-30 137.5 103 74.8
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.2e-29 135.6 149 56.4
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 2.5e-27 127.9 98 64.3
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 3.6e-26 124.0 154 52.6
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.2e-19 100.9 62 80.6
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 2.6e-16 91.3 245 31.8
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 4.4e-16 90.5 62 74.2
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 2.2e-15 88.2 67 68.7
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 2.8e-15 87.8 85 56.5
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 1.4e-14 85.5 77 57.1
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 2.0e-13 81.6 86 57.0
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 2.7e-13 81.3 69 66.7
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 1.7e-12 78.6 101 48.5
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 5.0e-12 77.0 69 60.9
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 2.8e-10 71.2 56 73.2
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.5e-08 65.5 37 81.1
MBI14_g41770_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.2e-07 61.6 76 51.3
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 4.9e-07 60.5 67 55.2


User provided reference genes

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