Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 0.0e+00 2122.4 1107 100.0
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 0.0e+00 1243.8 1094 65.3
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 0.0e+00 1207.2 1058 66.0
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 0.0e+00 1109.7 1085 61.0
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 2.6e-302 1042.3 1100 57.1
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 3.0e-290 1002.3 1100 56.0
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 8.4e-253 877.9 936 56.3
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.2e-246 857.4 970 55.3
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 2.0e-246 856.7 1034 53.0
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.4e-246 855.9 984 55.7
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.4e-246 855.9 983 56.0
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.2e-245 853.2 970 55.1
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 2.9e-245 852.8 994 53.3
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 5.1e-242 842.0 978 53.7
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 3.1e-239 832.8 983 53.7
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 2.5e-236 823.2 986 52.4
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 3.0e-234 816.2 986 53.9
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 4.3e-233 812.4 978 51.5
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 1.3e-232 810.8 980 53.3
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.8e-231 807.0 981 52.3
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 1.2e-230 804.3 983 53.2
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 2.0e-230 803.5 983 53.6
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 4.5e-230 802.4 800 60.8
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.0e-229 801.2 982 52.6
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 1.0e-229 801.2 981 52.7
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.0e-226 791.2 979 50.9
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.5e-225 787.3 979 50.7
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.3e-225 786.2 979 50.7
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 9.7e-225 784.6 978 50.9
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 2.8e-224 783.1 984 51.8
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 3.1e-223 779.6 982 51.7
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.9e-223 778.5 982 51.7
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 6.9e-223 778.5 1053 49.4
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 9.1e-223 778.1 982 51.8
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.2e-222 777.7 953 52.6
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 3.4e-222 776.2 936 52.6
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.5e-222 775.8 952 52.6
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.3e-221 774.2 981 52.0
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 1.4e-218 764.2 996 49.7
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 3.9e-218 762.7 958 50.8
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 8.8e-218 761.5 1109 46.3
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 3.2e-212 743.0 978 49.9
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 1.0e-210 738.0 949 49.1
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.4e-210 737.6 978 49.8
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 3.5e-206 723.0 971 47.8
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 1.7e-205 720.7 692 63.0
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.7e-205 720.7 986 46.7
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.0e-205 719.2 984 46.6
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.1e-204 718.0 953 49.4
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 8.0e-203 711.8 959 48.3
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 2.3e-202 710.3 900 50.2
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.6e-201 706.8 981 46.2
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 4.4e-201 706.1 956 49.6
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 9.8e-201 704.9 946 49.3
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 2.2e-200 703.7 956 48.2
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 2.2e-197 693.7 979 47.3
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 3.8e-197 693.0 918 49.8
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 5.5e-196 689.1 909 49.0
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 6.1e-195 685.6 952 48.6
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.0e-194 682.9 939 48.7
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 8.8e-194 681.8 956 48.7
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 8.8e-194 681.8 958 47.1
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 1.5e-193 681.0 950 49.2
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 3.4e-193 679.9 957 48.1
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 4.4e-193 679.5 992 46.5
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 9.8e-193 678.3 808 54.1
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 2.2e-192 677.2 1004 46.7
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 6.3e-192 675.6 979 46.7
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 8.3e-192 675.2 939 47.4
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.3e-192 675.2 896 46.8
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.1e-191 673.3 950 48.9
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.0e-190 670.6 895 46.1
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.7e-190 668.7 894 45.9
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 3.8e-189 666.4 916 48.4
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 2.5e-188 663.7 949 48.4
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 7.2e-188 662.1 952 46.8
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 9.5e-188 661.8 911 47.7
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 1.2e-187 661.4 919 48.1
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.2e-187 661.4 946 46.7
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 4.7e-187 659.4 950 47.4
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 5.2e-186 656.0 855 48.0
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 2.0e-185 654.1 950 47.4
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.8e-183 647.5 855 47.4
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.2e-182 644.8 1006 45.2
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 1.3e-181 641.3 972 46.5
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 3.3e-180 636.7 942 46.2
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 4.3e-180 636.3 891 46.2
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 1.6e-179 634.4 1018 43.5
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.0e-177 627.5 897 45.2
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 3.4e-177 626.7 913 47.9
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 2.9e-176 623.6 947 45.7
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 6.4e-176 622.5 945 46.5
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 8.3e-176 622.1 945 46.1
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 8.6e-173 612.1 942 46.4
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 2.5e-172 610.5 998 44.3
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 7.3e-172 609.0 1025 43.1
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.4e-169 599.7 956 44.6
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.3e-168 598.2 936 44.1
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 5.1e-165 586.3 949 45.1
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.1e-164 585.1 693 53.0
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 5.6e-164 582.8 948 44.4
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.8e-163 580.5 925 45.1
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 4.4e-161 573.2 904 45.5
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 4.9e-160 569.7 633 54.2
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 2.7e-158 563.9 957 43.9
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 1.3e-157 561.6 984 42.5
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 6.6e-157 559.3 889 45.1
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 8.6e-157 558.9 951 42.6
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.9e-156 557.8 934 45.5
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 7.3e-156 555.8 979 42.2
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 1.4e-154 551.6 894 43.5
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 1.2e-153 548.5 890 43.7
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 2.1e-150 537.7 914 44.1
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.1e-150 537.7 896 43.0
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 3.0e-149 533.9 890 42.2
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.5e-148 531.6 914 42.3
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 6.9e-146 522.7 943 41.1
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 6.9e-146 522.7 882 44.7
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 3.4e-145 520.4 987 39.4
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 7.9e-142 509.2 947 41.5
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.9e-140 504.6 982 40.1
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.9e-140 504.6 982 40.1
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 2.5e-140 504.2 940 41.9
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.1e-139 501.1 680 46.8
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 3.6e-139 500.4 900 40.7
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 8.1e-139 499.2 956 38.0
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 8.1e-139 499.2 983 40.3
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 2.4e-138 497.7 989 39.9
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 1.2e-137 495.4 933 41.8
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 2.0e-137 494.6 947 39.9
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 2.0e-137 494.6 947 40.0
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 4.9e-136 490.0 837 41.5
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.4e-136 489.2 725 48.4
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 8.4e-136 489.2 990 39.5
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 8.4e-136 489.2 988 39.2
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 1.1e-135 488.8 947 39.7
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 2.8e-131 474.2 584 49.3
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.4e-130 471.1 948 40.4
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 4.5e-129 466.8 701 44.1
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.0e-128 465.7 1053 37.6
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 2.4e-122 444.5 483 56.5
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.0e-117 429.1 1050 35.0
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 6.7e-117 426.4 881 37.9
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.3e-115 422.2 525 51.8
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 8.2e-115 419.5 629 45.8
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 5.0e-112 410.2 1081 35.9
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 3.3e-108 397.5 885 37.2
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.9e-103 381.7 1037 35.1
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.2e-97 362.5 953 34.5
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 9.1e-90 336.3 771 34.9
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 4.5e-89 334.0 553 41.4
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-87 328.9 450 48.4
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 1.1e-82 312.8 990 32.8
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 5.4e-82 310.5 339 54.6
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 2.7e-78 298.1 288 59.4
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 4.7e-70 270.8 381 46.7
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 1.3e-59 236.1 369 47.2
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 2.1e-54 218.8 228 56.6
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.8e-54 218.4 579 32.5
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 1.5e-52 212.6 623 30.5
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 5.8e-52 210.7 356 42.7
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 4.6e-49 201.1 421 39.0
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 1.3e-48 199.5 301 44.5
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 1.2e-44 186.4 275 49.5
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 6.6e-40 170.6 181 55.8
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.6e-33 147.9 265 43.0
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 6.0e-33 147.5 121 62.8
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.8e-29 136.0 292 36.0
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.5e-23 116.3 108 57.4
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 4.8e-22 111.3 109 56.9
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 9.0e-21 107.1 161 45.3
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.2e-18 98.6 113 51.3
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 1.9e-15 89.4 81 49.4
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 1.1e-13 83.6 82 53.7
HPP92_000305 Vanilla planifolia HOM05D000527 ORTHO05D000559 2.6e-12 79.0 110 46.4
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 7.6e-12 77.4 160 36.9
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.2e-11 75.9 44 75.0
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 4.9e-11 74.7 91 61.5
TAR371G1136 Trochodendron aralioides HOM05D030477 ORTHO05D004065 4.2e-10 71.6 39 89.7
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 5.5e-10 71.2 87 48.3
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 9.3e-10 70.5 168 32.7
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.2e-09 70.1 118 40.7
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 7.9e-09 67.4 83 45.8


User provided reference genes

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