Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22442 Nelumbo nucifera HOM05D002407 ORTHO05D002476 3.1e-98 361.7 171 100.0
Nn1g02265 Nelumbo nucifera HOM05D002407 ORTHO05D002476 1.6e-49 199.9 126 81.0
Nn4g26275 Nelumbo nucifera HOM05D002407 ORTHO05D002476 1.6e-41 173.3 120 69.2
TAR362G1005 Trochodendron aralioides HOM05D002407 ORTHO05D002476 3.3e-31 139.0 108 66.7
TAR633G0416 Trochodendron aralioides HOM05D002407 ORTHO05D002476 9.0e-29 131.0 110 60.9
Aqoxy2G03363 Aquilegia oxysepala HOM05D002407 ORTHO05D002476 2.4e-26 122.9 120 58.3
TAR365G0729 Trochodendron aralioides HOM05D002407 ORTHO05D002476 2.4e-26 122.9 108 62.0
Thecc.01G277700 Theobroma cacao HOM05D002407 ORTHO05D002476 5.4e-26 121.7 128 54.7
COL.COLO4_10231 Corchorus olitorius HOM05D002407 ORTHO05D002476 3.5e-25 119.0 110 57.3
Haze_00920 Corylus avellana HOM05D002407 ORTHO05D002476 4.6e-25 118.6 120 55.0
Duzib133G0624 Durio zibethinus HOM05D002407 ORTHO05D002476 6.0e-25 118.2 110 57.3
CiPaw.02G096000 Carya illinoinensis HOM05D002407 ORTHO05D002476 5.1e-24 115.2 125 51.2
Thecc.04G228600 Theobroma cacao HOM05D002407 ORTHO05D002476 5.6e-23 111.7 111 57.7
CiPaw.01G164400 Carya illinoinensis HOM05D002407 ORTHO05D002476 2.8e-22 109.4 110 53.6
GSVIVG01001149001 Vitis vinifera HOM05D002407 ORTHO05D002476 6.2e-22 108.2 120 53.3
PSO210G7189 Papaver somniferum HOM05D002407 ORTHO05D002476 1.8e-21 106.7 120 53.3
PSO832G2586 Papaver somniferum HOM05D002407 ORTHO05D002476 1.8e-21 106.7 120 53.3
TAR636G3152 Trochodendron aralioides HOM05D002407 ORTHO05D002476 1.8e-21 106.7 159 44.7
Duzib151G0448 Durio zibethinus HOM05D002407 ORTHO05D002476 2.4e-21 106.3 124 50.8
Atru.chr5.1448 Acer truncatum HOM05D002407 ORTHO05D002476 4.0e-21 105.5 125 52.0
Duzib052G1002 Durio zibethinus HOM05D002407 ORTHO05D002476 6.9e-21 104.8 110 54.5
Gohir.D09G217200 Gossypium hirsutum HOM05D002407 ORTHO05D002476 6.9e-21 104.8 108 53.7
Gorai.006G237700 Gossypium raimondii HOM05D002407 ORTHO05D002476 6.9e-21 104.8 108 53.7
MBI04_g44890_MAGBIO Magnolia biondii HOM05D002407 ORTHO05D002476 6.9e-21 104.8 108 51.9
Gohir.A09G214700 Gossypium hirsutum HOM05D002407 ORTHO05D002476 1.2e-20 104.0 108 53.7
Phvul.007G055400 Phaseolus vulgaris HOM05D002407 ORTHO05D002476 1.2e-20 104.0 108 55.6
COL.COLO4_09085 Corchorus olitorius HOM05D002407 ORTHO05D002476 1.5e-20 103.6 110 50.9
Duzib212G0865 Durio zibethinus HOM05D002407 ORTHO05D002476 2.6e-20 102.8 110 54.5
VMungo0720G1158 Vigna mungo HOM05D002407 ORTHO05D002476 2.6e-20 102.8 107 54.2
Ciclev10004136m.g Citrus clementina HOM05D002407 ORTHO05D002476 3.4e-20 102.4 119 50.4
Dinv44512 Davidia involucrata HOM05D002407 ORTHO05D002476 3.4e-20 102.4 122 51.6
Sed0021914 Sechium edule HOM05D002407 ORTHO05D002476 3.4e-20 102.4 116 49.1
Gorai.011G169000 Gossypium raimondii HOM05D002407 ORTHO05D002476 4.5e-20 102.1 110 53.6
Prupe.1G011200 Prunus persica HOM05D002407 ORTHO05D002476 4.5e-20 102.1 107 51.4
Cpa.g.sc58.130 Carica papaya HOM05D002407 ORTHO05D002476 7.6e-20 101.3 111 55.9
Lj6A599G41 Lonicera japonica HOM05D002407 ORTHO05D002476 7.6e-20 101.3 119 45.4
ClCG06G006080 Citrullus lanatus HOM05D002407 ORTHO05D002476 1.0e-19 100.9 116 49.1
Ciclev10018523m.g Citrus clementina HOM05D002407 ORTHO05D002476 1.0e-19 100.9 125 49.6
Gohir.A10G117100 Gossypium hirsutum HOM05D002407 ORTHO05D002476 1.0e-19 100.9 150 46.0
Gohir.D10G151700 Gossypium hirsutum HOM05D002407 ORTHO05D002476 1.3e-19 100.5 110 52.7
Actinidia23483 Actinidia chinensis HOM05D002407 ORTHO05D002476 1.7e-19 100.1 109 55.0
Glyma.10G249300 Glycine max HOM05D002407 ORTHO05D002476 2.2e-19 99.8 108 52.8
GSVIVG01017938001 Vitis vinifera HOM05D002407 ORTHO05D002476 2.2e-19 99.8 116 51.7
MELO3C014484.2 Cucumis melo HOM05D002407 ORTHO05D002476 2.9e-19 99.4 133 44.4
Atru.chr4.2501 Acer truncatum HOM05D002407 ORTHO05D002476 3.8e-19 99.0 131 43.5
QL12p021604 Quercus lobata HOM05D002407 ORTHO05D002476 3.8e-19 99.0 106 51.9
CsaV3_6G038190 Cucumis sativus L. HOM05D002407 ORTHO05D002476 4.9e-19 98.6 133 43.6
Hma1.2p1_3606F.1_g337000 Hydrangea macrophylla HOM05D002407 ORTHO05D002476 8.4e-19 97.8 119 49.6
Glyma.20G144400 Glycine max HOM05D002407 ORTHO05D002476 1.1e-18 97.4 109 54.1
ATR0332G080 Amborella trichopoda HOM05D002407 ORTHO05D002476 1.4e-18 97.1 127 46.5
TWI53G2093 Tripterygium wilfordii HOM05D002407 ORTHO05D002476 1.4e-18 97.1 135 48.1
Potri.002G052300 Populus trichocarpa HOM05D002407 ORTHO05D002476 2.5e-18 96.3 124 43.5
Haze_04701 Corylus avellana HOM05D002407 ORTHO05D002476 3.2e-18 95.9 120 45.8
Potri.005G210200 Populus trichocarpa HOM05D002407 ORTHO05D002476 4.2e-18 95.5 124 44.4
RcHm_v2.0_Chr4g0416621 Rosa chinensis HOM05D002407 ORTHO05D002476 4.2e-18 95.5 120 43.3
arahy.Tifrunner.gnm1.ann1.C339P9 Arachis hypogaea HOM05D002407 ORTHO05D002476 5.5e-18 95.1 109 52.3
Rhsim02G0022900 Rhododendron simsii HOM05D002407 ORTHO05D002476 7.1e-18 94.7 110 51.8
Sabra02G0042400 Salix brachista HOM05D002407 ORTHO05D002476 9.3e-18 94.4 123 42.3
Duzib138G1894 Durio zibethinus HOM05D002407 ORTHO05D002476 1.2e-17 94.0 110 50.0
Ca_10916_v3 Cicer arietinum L. HOM05D002407 ORTHO05D002476 1.6e-17 93.6 123 50.4
FAN17G1063 Fragaria x ananassa HOM05D002407 ORTHO05D002476 1.6e-17 93.6 109 47.7
TWI73G0052 Tripterygium wilfordii HOM05D002407 ORTHO05D002476 1.6e-17 93.6 110 50.9
TWI09G0219 Tripterygium wilfordii HOM05D002407 ORTHO05D002476 2.1e-17 93.2 133 44.4
HPP92_006103 Vanilla planifolia HOM05D002407 ORTHO05D002476 2.1e-17 93.2 123 43.9
FAN07G2387 Fragaria x ananassa HOM05D002407 ORTHO05D002476 3.5e-17 92.4 109 46.8
FAN22G1385 Fragaria x ananassa HOM05D002407 ORTHO05D002476 3.5e-17 92.4 109 46.8
QL06p003139 Quercus lobata HOM05D002407 ORTHO05D002476 3.5e-17 92.4 124 45.2
arahy.Tifrunner.gnm1.ann1.GGU5D9 Arachis hypogaea HOM05D002407 ORTHO05D002476 4.6e-17 92.0 109 51.4
Lalb_Chr05g0210931 Lupinus albus HOM05D002407 ORTHO05D002476 4.6e-17 92.0 124 46.0
MD13G1190800 Malus domestica HOM05D002407 ORTHO05D002476 6.0e-17 91.7 111 49.5
MD16G1191200 Malus domestica HOM05D002407 ORTHO05D002476 6.0e-17 91.7 119 47.1
Actinidia40180 Actinidia chinensis HOM05D002407 ORTHO05D002476 7.9e-17 91.3 130 47.7
Dinv38434 Davidia involucrata HOM05D002407 ORTHO05D002476 1.0e-16 90.9 111 47.7
Cfa006148 Carpinus fangiana HOM05D002407 ORTHO05D002476 1.3e-16 90.5 109 45.0
FvH4_4g15230 Fragaria vesca HOM05D002407 ORTHO05D002476 1.3e-16 90.5 109 45.9
FAN12G3852 Fragaria x ananassa HOM05D002407 ORTHO05D002476 1.3e-16 90.5 109 45.9
Actinidia08503 Actinidia chinensis HOM05D002407 ORTHO05D002476 3.0e-16 89.4 158 41.8
Manes.15G026500 Manihot esculenta HOM05D002407 ORTHO05D002476 3.0e-16 89.4 119 45.4
HanXRQChr04g0111801 Helianthus annuus HOM05D002407 ORTHO05D002476 3.9e-16 89.0 110 48.2
Lj6C594G25 Lonicera japonica HOM05D002407 ORTHO05D002476 5.1e-16 88.6 126 42.1
Medtr1g104710 Medicago truncatula HOM05D002407 ORTHO05D002476 6.7e-16 88.2 110 50.9
Duzib211G0657 Durio zibethinus HOM05D002407 ORTHO05D002476 1.1e-15 87.4 111 49.5
Manes.15G027400 Manihot esculenta HOM05D002407 ORTHO05D002476 1.1e-15 87.4 108 47.2
Lalb_Chr09g0319791 Lupinus albus HOM05D002407 ORTHO05D002476 1.5e-15 87.0 120 47.5
Cc03_g03560 Coffea canephora HOM05D002407 ORTHO05D002476 2.5e-15 86.3 110 42.7
DCAR_027191 Daucus carota HOM05D002407 ORTHO05D002476 2.5e-15 86.3 155 38.7
DCAR_027192 Daucus carota HOM05D002407 ORTHO05D002476 2.5e-15 86.3 154 37.0
Sed0008106 Sechium edule HOM05D002407 ORTHO05D002476 2.5e-15 86.3 133 45.1
Carub.0003s2254 Capsella rubella HOM05D002407 ORTHO05D002476 3.3e-15 85.9 108 47.2
HanXRQChr04g0111791 Helianthus annuus HOM05D002407 ORTHO05D002476 3.3e-15 85.9 111 47.7
Lj5g0016334 Lotus japonicus HOM05D002407 ORTHO05D002476 7.4e-15 84.7 108 47.2
BcaB06g26339 Brassica carinata HOM05D002407 ORTHO05D002476 9.6e-15 84.3 124 41.9
Lsat_1_v5_gn_5_148881 Lactuca sativa HOM05D002407 ORTHO05D002476 2.1e-14 83.2 110 45.5
AL3G36660 Arabidopsis lyrata HOM05D002407 ORTHO05D002476 2.8e-14 82.8 107 44.9
Potri.010G089700 Populus trichocarpa HOM05D002407 ORTHO05D002476 2.8e-14 82.8 108 45.4
AT3G22380 Arabidopsis thaliana HOM05D002407 ORTHO05D002476 6.2e-14 81.6 107 43.9
Gohir.A12G004800 Gossypium hirsutum HOM05D002407 ORTHO05D002476 8.2e-14 81.3 118 42.4
Potri.008G151200 Populus trichocarpa HOM05D002407 ORTHO05D002476 8.2e-14 81.3 108 49.1
Sp3g20150 Schrenkiella parvula HOM05D002407 ORTHO05D002476 8.2e-14 81.3 155 36.8
Aa31LG8G8910 Aethionema arabicum HOM05D002407 ORTHO05D002476 1.1e-13 80.9 107 44.9
SalBow2G0563 Salvia bowleyana HOM05D002407 ORTHO05D002476 1.1e-13 80.9 125 43.2
A01p32710 Brassica napus HOM05D002407 ORTHO05D002476 1.4e-13 80.5 158 35.4
BraA01t03399Z Brassica rapa HOM05D002407 ORTHO05D002476 1.4e-13 80.5 158 35.4
Carub.0007s2714 Capsella rubella HOM05D002407 ORTHO05D002476 1.4e-13 80.5 166 36.7
Thhalv10019888m.g Eutrema salsugineum HOM05D002407 ORTHO05D002476 3.1e-13 79.3 107 42.1
ECA234G2398 Erigeron canadensis HOM05D002407 ORTHO05D002476 4.1e-13 79.0 156 35.9
Gohir.D12G004400 Gossypium hirsutum HOM05D002407 ORTHO05D002476 5.3e-13 78.6 118 41.5
Sabra08G0115000 Salix brachista HOM05D002407 ORTHO05D002476 5.3e-13 78.6 108 46.3
Sopen09g030650 Solanum pennellii HOM05D002407 ORTHO05D002476 5.3e-13 78.6 126 43.7
BcaB04g20522 Brassica carinata HOM05D002407 ORTHO05D002476 9.0e-13 77.8 107 43.0
Gorai.008G004200 Gossypium raimondii HOM05D002407 ORTHO05D002476 9.0e-13 77.8 118 41.5
Nitab4.5_0007048g0010 Nicotiana tabacum HOM05D002407 ORTHO05D002476 9.0e-13 77.8 110 48.2
MSTRG.21848 Avicennia marina HOM05D002407 ORTHO05D002476 1.5e-12 77.0 148 39.9
BcaC01g03446 Brassica carinata HOM05D002407 ORTHO05D002476 3.4e-12 75.9 108 40.7
A03p42740 Brassica napus HOM05D002407 ORTHO05D002476 3.4e-12 75.9 108 41.7
C03p52490 Brassica napus HOM05D002407 ORTHO05D002476 3.4e-12 75.9 108 40.7
BolC3t17519H Brassica oleracea HOM05D002407 ORTHO05D002476 3.4e-12 75.9 108 40.7
BraA03t13421Z Brassica rapa HOM05D002407 ORTHO05D002476 3.4e-12 75.9 108 41.7
CARHR098270 Cardamine hirsuta HOM05D002407 ORTHO05D002476 3.4e-12 75.9 107 40.2
BcaC09g49170 Brassica carinata HOM05D002407 ORTHO05D002476 4.5e-12 75.5 129 36.4
C01p41910 Brassica napus HOM05D002407 ORTHO05D002476 4.5e-12 75.5 129 36.4
BolC1t04147H Brassica oleracea HOM05D002407 ORTHO05D002476 4.5e-12 75.5 129 36.4
CAN.G907.19 Capsicum annuum HOM05D002407 ORTHO05D002476 4.5e-12 75.5 125 41.6
AUR62038105 Chenopodium quinoa HOM05D002407 ORTHO05D002476 4.5e-12 75.5 127 40.2
Eucgr.H03537 Eucalyptus grandis HOM05D002407 ORTHO05D002476 4.5e-12 75.5 107 46.7
MSTRG.24745 Avicennia marina HOM05D002407 ORTHO05D002476 5.8e-12 75.1 109 45.0
A05p26430 Brassica napus HOM05D002407 ORTHO05D002476 5.8e-12 75.1 150 36.0
BraA05t21516Z Brassica rapa HOM05D002407 ORTHO05D002476 5.8e-12 75.1 150 36.0
Prupe.8G240200 Prunus persica HOM05D002407 ORTHO05D002476 5.8e-12 75.1 107 41.1
AUR62038630 Chenopodium quinoa HOM05D002407 ORTHO05D002476 7.6e-12 74.7 158 36.1
Solyc09g075830.3 Solanum lycopersicum HOM05D002407 ORTHO05D002476 1.3e-11 73.9 127 43.3
BcaB04g19200 Brassica carinata HOM05D002407 ORTHO05D002476 1.7e-11 73.6 107 39.3
BcaC05g28079 Brassica carinata HOM05D002407 ORTHO05D002476 1.7e-11 73.6 107 39.3
C05p41010 Brassica napus HOM05D002407 ORTHO05D002476 1.7e-11 73.6 107 39.3
BolC5t32844H Brassica oleracea HOM05D002407 ORTHO05D002476 1.7e-11 73.6 107 39.3
Os07g0571100 Oryza sativa ssp. japonica HOM05D002407 ORTHO05D002476 2.2e-11 73.2 118 40.7
SHI00424 Sapria himalayana HOM05D002407 ORTHO05D002476 2.2e-11 73.2 118 43.2
Hund12142 Selenicereus undatus HOM05D002407 ORTHO05D002476 2.9e-11 72.8 110 37.3
PGR004G2462 Punica granatum HOM05D002407 ORTHO05D002476 1.1e-10 70.9 124 39.5
Oeu041218.1 Olea europaea HOM05D002407 ORTHO05D002476 1.4e-10 70.5 120 40.8
CSS0005054 Camellia sinensis var. sinensis HOM05D002407 ORTHO05D002476 1.9e-10 70.1 122 45.1
MSTRG.4019 Avicennia marina HOM05D002407 ORTHO05D002476 3.2e-10 69.3 124 32.3
Sabra10G0053600 Salix brachista HOM05D002407 ORTHO05D002476 4.2e-10 68.9 108 42.6
SGA_v2.0_scaffold39G15271 Striga asiatica HOM05D002407 ORTHO05D002476 7.1e-10 68.2 109 43.1
Actinidia36978 Actinidia chinensis HOM05D002407 ORTHO05D002476 9.3e-10 67.8 88 46.6
unitig_748.g8339 Utricularia gibba HOM05D002407 ORTHO05D002476 2.1e-09 66.6 134 35.1
HPP92_024870 Vanilla planifolia HOM05D002407 ORTHO05D002476 2.7e-09 66.2 154 36.4
TPR.G9122 Trifolium pratense HOM05D002407 ORTHO05D002476 3.5e-09 65.9 139 32.4
Migut.N00175 Erythranthe guttata HOM05D002407 ORTHO05D002476 6.1e-09 65.1 122 38.5
Glyma.06G095800 Glycine max HOM05D002407 ORTHO05D002476 2.3e-08 63.2 67 52.2
Glyma.10G027000 Glycine max HOM05D002407 ORTHO05D002476 2.3e-08 63.2 109 40.4
Medtr1g072160 Medicago truncatula HOM05D002407 ORTHO05D002476 5.1e-08 62.0 124 33.1
HPP92_027912 Vanilla planifolia HOM05D002407 ORTHO05D002476 1.9e-07 60.1 41 58.5
Glyma.02G146900 Glycine max HOM05D002407 ORTHO05D002476 5.7e-07 58.5 107 38.3
ATR0743G011 Amborella trichopoda HOM05D002407 ORTHO05D002476 1.3e-06 57.4 95 42.1
MBI06_g04697_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D011619 2.2e-06 56.6 44 59.1
Sc25g0004400 Simmondsia chinensis HOM05D002407 ORTHO05D002476 8.2e-06 54.7 159 30.2


User provided reference genes

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