Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22155 Nelumbo nucifera HOM05D006427 ORTHO05D008147 1.8e-75 285.8 140 100.0
Nn3g16291 Nelumbo nucifera HOM05D006427 ORTHO05D008147 4.4e-50 201.4 143 73.4
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 8.9e-43 177.2 144 67.4
GSVIVG01032993001 Vitis vinifera HOM05D006427 ORTHO05D008147 2.6e-42 175.6 140 64.3
CSS0005682 Camellia sinensis var. sinensis HOM05D006427 ORTHO05D008147 3.8e-41 171.8 143 63.6
vmacro18378 Vaccinium macrocarpon HOM05D006427 ORTHO05D008147 6.4e-41 171.0 141 65.2
COL.COLO4_21789 Corchorus olitorius HOM05D006427 ORTHO05D008147 3.2e-40 168.7 143 65.7
Duzib132G1024 Durio zibethinus HOM05D006427 ORTHO05D008147 2.7e-39 165.6 141 65.2
Peaxi162Scf00128g01753 Petunia axillaris HOM05D006427 ORTHO05D008147 2.3e-38 162.5 142 62.7
Prupe.1G216700 Prunus persica HOM05D006427 ORTHO05D008147 3.9e-38 161.8 146 59.6
Duzib052G1158 Durio zibethinus HOM05D006427 ORTHO05D008147 6.6e-38 161.0 142 65.5
Thecc.02G193800 Theobroma cacao HOM05D006427 ORTHO05D008147 6.6e-38 161.0 142 64.8
Thecc.04G047300 Theobroma cacao HOM05D006427 ORTHO05D008147 1.9e-37 159.5 140 62.1
QL03p049638 Quercus lobata HOM05D006427 ORTHO05D008147 7.3e-37 157.5 139 61.2
Rhsim08G0039400 Rhododendron simsii HOM05D006427 ORTHO05D008147 7.3e-37 157.5 140 63.6
Haze_14945 Corylus avellana HOM05D006427 ORTHO05D008147 9.6e-37 157.1 144 57.6
MELO3C022354.2 Cucumis melo HOM05D006427 ORTHO05D008147 2.8e-36 155.6 143 60.1
QL02p069636 Quercus lobata HOM05D006427 ORTHO05D008147 2.8e-36 155.6 139 57.6
Gohir.D11G067900 Gossypium hirsutum HOM05D006427 ORTHO05D008147 3.6e-36 155.2 132 60.6
Gorai.007G072700 Gossypium raimondii HOM05D006427 ORTHO05D008147 3.6e-36 155.2 132 60.6
Dinv19142 Davidia involucrata HOM05D006427 ORTHO05D008147 4.8e-36 154.8 142 57.0
MD16G1129900 Malus domestica HOM05D006427 ORTHO05D008147 4.8e-36 154.8 141 60.3
GSVIVG01004944001 Vitis vinifera HOM05D006427 ORTHO05D008147 4.8e-36 154.8 141 61.0
vmacro10314 Vaccinium macrocarpon HOM05D000095 ORTHO05D008147 8.1e-36 154.1 127 61.4
Atru.chr2.853 Acer truncatum HOM05D006427 ORTHO05D008147 1.1e-35 153.7 140 57.9
CsaV3_6G007780 Cucumis sativus L. HOM05D006427 ORTHO05D008147 2.4e-35 152.5 142 59.2
Gohir.A11G063600 Gossypium hirsutum HOM05D006427 ORTHO05D008147 6.9e-35 151.0 132 59.8
MBI07_g07335_MAGBIO Magnolia biondii HOM05D006427 ORTHO05D008147 1.2e-34 150.2 141 58.2
ClCG06G001750 Citrullus lanatus HOM05D006427 ORTHO05D006987 1.5e-34 149.8 145 57.2
FAN07G1740 Fragaria x ananassa HOM05D006427 ORTHO05D008147 3.4e-34 148.7 144 61.1
Ciclev10006190m.g Citrus clementina HOM05D006427 ORTHO05D008147 4.5e-34 148.3 140 57.9
Eucgr.G01934 Eucalyptus grandis HOM05D006427 ORTHO05D008147 5.8e-34 147.9 140 56.4
Lj1g0026899 Lotus japonicus HOM05D006427 ORTHO05D008147 5.8e-34 147.9 134 61.2
Aqoxy5G03163 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 7.6e-34 147.5 147 55.8
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 7.6e-34 147.5 144 60.4
Phvul.001G085200 Phaseolus vulgaris HOM05D006427 ORTHO05D008147 7.6e-34 147.5 142 57.0
Sabra01G0046200 Salix brachista HOM05D006427 ORTHO05D008147 7.6e-34 147.5 136 62.5
arahy.Tifrunner.gnm1.ann1.YL5YHR Arachis hypogaea HOM05D006427 ORTHO05D008147 9.9e-34 147.1 142 57.0
Potri.001G066400 Populus trichocarpa HOM05D006427 ORTHO05D008147 9.9e-34 147.1 136 62.5
CiPaw.03G002500 Carya illinoinensis HOM05D006427 ORTHO05D008147 1.7e-33 146.4 142 57.7
Duzib264G1258 Durio zibethinus HOM05D006427 ORTHO05D008147 1.7e-33 146.4 140 57.1
Sed0027051 Sechium edule HOM05D006427 ORTHO05D008147 1.7e-33 146.4 99 68.7
arahy.Tifrunner.gnm1.ann1.BNAN8S Arachis hypogaea HOM05D006427 ORTHO05D008147 2.9e-33 145.6 142 56.3
FAN12G4324 Fragaria x ananassa HOM05D006427 ORTHO05D008147 3.8e-33 145.2 144 59.7
Eucgr.G01965 Eucalyptus grandis HOM05D006427 ORTHO05D008147 1.4e-32 143.3 140 55.7
Glyma.16G049000 Glycine max HOM05D006427 ORTHO05D008147 2.4e-32 142.5 142 57.0
PGR119G1648 Punica granatum HOM05D006427 ORTHO05D008147 4.2e-32 141.7 166 52.4
Manes.04G092801 Manihot esculenta HOM05D006427 ORTHO05D008147 7.1e-32 141.0 145 58.6
Atru.chr10.1283 Acer truncatum HOM05D006427 ORTHO05D008147 9.3e-32 140.6 138 56.5
Ciclev10017113m.g Citrus clementina HOM05D006427 ORTHO05D008147 1.2e-31 140.2 144 54.9
PSO017G1866 Papaver somniferum HOM05D006427 ORTHO05D008147 1.2e-31 140.2 142 57.0
PSO478G1388 Papaver somniferum HOM05D006427 ORTHO05D008147 1.6e-31 139.8 140 56.4
CDE06G0025 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 2.7e-31 139.0 140 56.4
Gorai.012G125000 Gossypium raimondii HOM05D006427 ORTHO05D008147 2.7e-31 139.0 97 71.1
Ca_08136_v3 Cicer arietinum L. HOM05D006427 ORTHO05D008147 4.6e-31 138.3 143 54.5
Glyma.19G102400 Glycine max HOM05D006427 ORTHO05D008147 6.0e-31 137.9 141 54.6
VMungo1383G1825 Vigna mungo HOM05D006427 ORTHO05D008147 6.0e-31 137.9 142 53.5
Gohir.A04G100800 Gossypium hirsutum HOM05D006427 ORTHO05D008147 7.9e-31 137.5 139 58.3
ATR0582G340 Amborella trichopoda HOM05D006427 ORTHO05D008147 1.0e-30 137.1 139 52.5
Gohir.D04G140100 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.3e-30 136.7 139 56.1
CDE02G3326 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 1.8e-30 136.3 135 55.6
Cc11_g15110 Coffea canephora HOM05D006427 ORTHO05D008147 2.3e-30 136.0 138 53.6
Cpa.g.sc70.74 Carica papaya HOM05D006427 ORTHO05D008147 5.1e-30 134.8 137 56.9
Manes.09G187300 Manihot esculenta HOM05D006427 ORTHO05D008147 1.1e-29 133.7 137 59.1
CANSAT01G2059 Cannabis sativa HOM05D006427 ORTHO05D008147 5.6e-29 131.3 91 70.3
Psat3g093640 Pisum sativum HOM05D006427 ORTHO05D008147 5.6e-29 131.3 144 51.4
Hma1.2p1_1436F.1_g283150 Hydrangea macrophylla HOM05D006427 ORTHO05D008147 1.6e-28 129.8 161 50.3
Medtr7g084000 Medicago truncatula HOM05D006427 ORTHO05D008147 4.8e-28 128.3 149 53.7
TWI36G1420 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 4.8e-28 128.3 97 66.0
Atru.chr12.1402 Acer truncatum HOM05D006427 ORTHO05D008147 1.1e-27 127.1 79 73.4
Potri.003G163402 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.1e-27 127.1 97 70.1
HPP92_021622 Vanilla planifolia HOM05D006427 ORTHO05D008147 1.1e-27 127.1 121 57.0
Lj3g0013404 Lotus japonicus HOM05D006427 ORTHO05D008147 2.4e-27 125.9 135 53.3
RhsimUnG0101500 Rhododendron simsii HOM05D006427 ORTHO05D008147 5.3e-27 124.8 82 69.5
TWI18G0640 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 5.3e-27 124.8 134 55.2
BcaB07g30216 Brassica carinata HOM05D006427 ORTHO05D008147 6.9e-27 124.4 143 49.7
MELO3C014813.2 Cucumis melo HOM05D006427 ORTHO05D008147 2.6e-26 122.5 136 52.9
THA.LOC104805303 Tarenaya hassleriana HOM05D006427 ORTHO05D008147 3.4e-26 122.1 132 54.5
CsaV3_3G027740 Cucumis sativus L. HOM05D006427 ORTHO05D008147 7.6e-26 120.9 135 54.8
BcaC04g23927 Brassica carinata HOM05D006427 ORTHO05D008147 1.3e-25 120.2 142 51.4
C09p03290 Brassica napus HOM05D006427 ORTHO05D008147 1.3e-25 120.2 142 51.4
Duzib187G0815 Durio zibethinus HOM05D006427 ORTHO05D008147 2.2e-25 119.4 132 50.0
PGR042G0015 Punica granatum HOM05D006427 ORTHO05D008147 2.2e-25 119.4 144 49.3
Sp2g15860 Schrenkiella parvula HOM05D006427 ORTHO05D008147 2.2e-25 119.4 105 58.1
Thhalv10005093m.g Eutrema salsugineum HOM05D006427 ORTHO05D008147 2.9e-25 119.0 147 49.0
CANSAT64G0982 Cannabis sativa HOM05D006427 ORTHO05D008147 4.9e-25 118.2 144 51.4
C02p53270 Brassica napus HOM05D006427 ORTHO05D008147 6.4e-25 117.9 143 47.6
A09p03110 Brassica napus HOM05D001087 ORTHO05D001846 2.4e-24 115.9 134 53.0
BraA09t35950Z Brassica rapa HOM05D006427 ORTHO05D003553 2.4e-24 115.9 134 53.0
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 4.2e-24 115.2 140 47.9
PGSC0003DMG400026417 Solanum tuberosum HOM05D006427 ORTHO05D008147 4.2e-24 115.2 86 68.6
Sopen09g034980 Solanum pennellii HOM05D006427 ORTHO05D008147 1.6e-23 113.2 84 66.7
BraA02t08479Z Brassica rapa HOM05D006427 ORTHO05D008147 2.1e-23 112.8 145 47.6
Carub.0005s0476 Capsella rubella HOM05D006427 ORTHO05D008147 2.7e-23 112.5 103 56.3
A02p34710 Brassica napus HOM05D006427 ORTHO05D008147 3.5e-23 112.1 143 46.9
Os01g0102900 Oryza sativa ssp. japonica HOM05D006427 ORTHO05D008147 3.5e-23 112.1 89 61.8
Solyc09g092110.4 Solanum lycopersicum HOM05D006427 ORTHO05D008147 4.6e-23 111.7 81 67.9
Atru.chr5.1933 Acer truncatum HOM05D006427 ORTHO05D008147 6.0e-23 111.3 78 66.7
Atru.chr6.2655 Acer truncatum HOM05D006427 ORTHO05D008147 1.0e-22 110.5 69 75.4
SEGI_30338 Sequoiadendron giganteum HOM05D006427 ORTHO05D008147 2.3e-22 109.4 142 45.8
MSTRG.3040 Avicennia marina HOM05D006427 ORTHO05D008147 6.7e-22 107.8 141 46.1
CARHR147760 Cardamine hirsuta HOM05D006427 ORTHO05D008147 1.1e-21 107.1 143 49.0
ECA234G1075 Erigeron canadensis HOM05D006427 ORTHO05D008147 1.9e-21 106.3 99 58.6
AT3G26740 Arabidopsis thaliana HOM05D006427 ORTHO05D008147 1.6e-20 103.2 96 58.3
HanXRQChr16g0499601 Helianthus annuus HOM05D006427 ORTHO05D008147 1.6e-20 103.2 136 48.5
SGA_v2.0_scaffold44G16952 Striga asiatica HOM05D006427 ORTHO05D008147 1.6e-20 103.2 113 52.2
COL.COLO4_13367 Corchorus olitorius HOM05D006427 ORTHO05D008147 2.1e-20 102.8 116 50.9
AL5G15590 Arabidopsis lyrata HOM05D006427 ORTHO05D008147 2.8e-20 102.4 141 48.2
Migut.F00015 Erythranthe guttata HOM05D006427 ORTHO05D008147 3.7e-20 102.1 91 52.7
Atru.chr9.488 Acer truncatum HOM05D006427 ORTHO05D008147 6.2e-20 101.3 74 64.9
Potri.014G145500 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.8e-19 99.8 118 50.8
Aa31LG2G5820 Aethionema arabicum HOM05D006427 ORTHO05D008147 3.1e-19 99.0 92 52.2
RcHm_v2.0_Chr4g0429011 Rosa chinensis HOM05D006427 ORTHO05D008147 3.1e-19 99.0 119 52.9
SalBow4G0295 Salvia bowleyana HOM05D002416 ORTHO05D002554 5.3e-19 98.2 86 57.0
SalBow4G2027 Salvia bowleyana HOM05D002416 ORTHO05D002554 5.3e-19 98.2 86 57.0
FvH4_4g22790 Fragaria vesca HOM05D006427 ORTHO05D008147 2.6e-18 95.9 119 53.8
CBR_g20422 Chara braunii HOM05D006427 ORTHO05D008147 4.2e-16 88.6 106 43.4
Aqoxy5G03161 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 2.1e-15 86.3 85 51.8
Mapoly0029s0093 Marchantia polymorpha HOM05D006427 ORTHO05D008147 7.9e-15 84.3 139 40.3
Hund04203 Selenicereus undatus HOM05D006427 ORTHO05D008147 7.9e-15 84.3 71 59.2
Zm00001eb138400 Zea mays HOM05D000461 ORTHO05D008147 6.7e-14 81.3 115 38.3
Zm00001eb182180 Zea mays HOM05D006427 ORTHO05D008147 8.7e-14 80.9 97 43.3
Sc03g0004990 Simmondsia chinensis HOM05D006427 ORTHO05D008147 1.5e-13 80.1 124 44.4
ClCG05G012680 Citrullus lanatus HOM05D006427 ORTHO05D008147 3.1e-11 72.4 72 56.9
EL10Ac6g13399 Beta vulgaris HOM05D006427 ORTHO05D008147 1.2e-10 70.5 117 40.2
Atru.chr1.3017 Acer truncatum HOM05D006427 ORTHO05D008147 2.9e-09 65.9 90 47.8
Zm00001eb127000 Zea mays HOM05D006427 ORTHO05D008147 1.1e-08 63.9 82 39.0
BolC2t11399H Brassica oleracea HOM05D006427 ORTHO05D008147 4.2e-08 62.0 107 37.4
AagrBONN_evm.TU.Sc2ySwM_344.2063 Anthoceros agrestis HOM05D006427 ORTHO05D008147 1.8e-06 56.6 98 38.8
Zm00001eb390880 Zea mays HOM05D001191 ORTHO05D000979 1.8e-06 56.6 88 38.6


User provided reference genes

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