Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn3g20336 Nelumbo nucifera HOM05D002081 ORTHO05D002088 8.2e-64 246.9 125 100.0
Nn2g11249 Nelumbo nucifera HOM05D002081 ORTHO05D002088 2.8e-19 99.0 62 83.9
Dinv16263 Davidia involucrata HOM05D002081 ORTHO05D002088 6.4e-16 87.8 62 71.0
TAR633G0599 Trochodendron aralioides HOM05D002081 ORTHO05D002088 4.1e-15 85.1 62 67.7
TAR636G1215 Trochodendron aralioides HOM05D002081 ORTHO05D002088 5.4e-15 84.7 61 67.2
TAR636G1286 Trochodendron aralioides HOM05D002081 ORTHO05D002088 5.4e-15 84.7 61 67.2
GSVIVG01016466001 Vitis vinifera HOM05D002081 ORTHO05D002088 5.4e-15 84.7 61 68.9
CSS0002569 Camellia sinensis var. sinensis HOM05D002081 ORTHO05D002088 9.2e-15 84.0 62 66.1
TWI15G0806 Tripterygium wilfordii HOM05D002081 ORTHO05D002088 9.2e-15 84.0 62 69.4
Glyma.14G065500 Glycine max HOM05D002081 ORTHO05D002088 2.1e-14 82.8 62 66.1
TWI38G1695 Tripterygium wilfordii HOM05D002081 ORTHO05D002088 2.7e-14 82.4 62 67.7
Ciclev10032419m.g Citrus clementina HOM05D002081 ORTHO05D002088 3.5e-14 82.0 62 61.3
Glyma.02G251200 Glycine max HOM05D002081 ORTHO05D002088 3.5e-14 82.0 62 64.5
Phvul.008G230200 Phaseolus vulgaris HOM05D002081 ORTHO05D002088 3.5e-14 82.0 62 64.5
VMungo0647G2156 Vigna mungo HOM05D002081 ORTHO05D002088 3.5e-14 82.0 62 64.5
Duzib106G0506 Durio zibethinus HOM05D002081 ORTHO05D002088 6.0e-14 81.3 61 67.2
Oeu031368.3 Olea europaea HOM05D000784 ORTHO05D000116 7.8e-14 80.9 62 61.3
Sc10g0001880 Simmondsia chinensis HOM05D002081 ORTHO05D002088 7.8e-14 80.9 62 61.3
Thecc.10G034500 Theobroma cacao HOM05D002081 ORTHO05D002088 7.8e-14 80.9 62 64.5
Gohir.A05G347300 Gossypium hirsutum HOM05D002081 ORTHO05D002088 1.0e-13 80.5 62 66.1
Nn2g13497 Nelumbo nucifera HOM05D002081 ORTHO05D002088 1.3e-13 80.1 62 64.5
PSO339G3649 Papaver somniferum HOM05D002081 ORTHO05D002088 1.3e-13 80.1 79 50.6
PSO384G4711 Papaver somniferum HOM05D002081 ORTHO05D002088 1.3e-13 80.1 79 50.6
arahy.Tifrunner.gnm1.ann1.W8JJXT Arachis hypogaea HOM05D002081 ORTHO05D002088 1.7e-13 79.7 62 61.3
arahy.Tifrunner.gnm1.ann1.YTA3II Arachis hypogaea HOM05D002081 ORTHO05D002088 1.7e-13 79.7 62 61.3
Peaxi162Scf00658g00313 Petunia axillaris HOM05D002081 ORTHO05D002088 1.7e-13 79.7 62 61.3
CiPaw.01G292200 Carya illinoinensis HOM05D002081 ORTHO05D002088 2.3e-13 79.3 62 64.5
Hma1.2p1_0039F.1_g024690 Hydrangea macrophylla HOM05D002081 ORTHO05D002088 2.3e-13 79.3 62 62.9
Oeu001519.1 Olea europaea HOM05D002081 ORTHO05D002088 2.3e-13 79.3 62 59.7
Actinidia02912 Actinidia chinensis HOM05D002081 ORTHO05D002088 3.0e-13 79.0 57 68.4
LjContig00141g0016830 Lotus japonicus HOM05D002081 ORTHO05D002088 3.0e-13 79.0 62 62.9
Lalb_Chr10g0104771 Lupinus albus HOM05D002081 ORTHO05D002088 3.0e-13 79.0 62 61.3
Prupe.2G240900 Prunus persica HOM05D002081 ORTHO05D002088 3.0e-13 79.0 62 64.5
COL.COLO4_25522 Corchorus olitorius HOM05D002081 ORTHO05D002088 5.1e-13 78.2 62 64.5
Lj8C78T3 Lonicera japonica HOM05D002081 ORTHO05D002088 6.6e-13 77.8 62 64.5
vmacro10211 Vaccinium macrocarpon HOM05D002081 ORTHO05D002088 6.6e-13 77.8 62 59.7
Cfa001415 Carpinus fangiana HOM05D002081 ORTHO05D002088 8.6e-13 77.4 62 62.9
Haze_17129 Corylus avellana HOM05D002081 ORTHO05D002088 8.6e-13 77.4 62 62.9
Gohir.D04G065000 Gossypium hirsutum HOM05D002081 ORTHO05D002088 8.6e-13 77.4 62 62.9
Gorai.012G073100 Gossypium raimondii HOM05D002081 ORTHO05D002088 8.6e-13 77.4 62 62.9
Gohir.A10G223500 Gossypium hirsutum HOM05D002081 ORTHO05D002088 1.1e-12 77.0 62 62.9
MBI14_g09011_MAGBIO Magnolia biondii HOM05D002081 ORTHO05D002088 1.5e-12 76.6 62 62.9
Duzib114G0689 Durio zibethinus HOM05D002081 ORTHO05D002088 1.9e-12 76.3 62 62.9
Manes.10G024700 Manihot esculenta HOM05D002081 ORTHO05D002088 1.9e-12 76.3 62 61.3
Peaxi162Scf00164g01416 Petunia axillaris HOM05D002081 ORTHO05D002088 1.9e-12 76.3 62 56.5
Aqoxy1G00829 Aquilegia oxysepala HOM05D002081 ORTHO05D002088 2.5e-12 75.9 62 59.7
FvH4_7g23450 Fragaria vesca HOM05D002081 ORTHO05D002088 2.5e-12 75.9 62 58.1
RcHm_v2.0_Chr1g0368591 Rosa chinensis HOM05D002081 ORTHO05D002088 2.5e-12 75.9 62 59.7
Gohir.D10G235900 Gossypium hirsutum HOM05D002081 ORTHO05D002088 3.3e-12 75.5 62 61.3
Gorai.011G269800 Gossypium raimondii HOM05D002081 ORTHO05D002088 3.3e-12 75.5 62 61.3
CANSAT56G4043 Cannabis sativa HOM05D002081 ORTHO05D002088 4.3e-12 75.1 62 61.3
CANSAT64G2080 Cannabis sativa HOM05D002081 ORTHO05D002088 4.3e-12 75.1 62 61.3
PGR142G4126 Punica granatum HOM05D002081 ORTHO05D002088 4.3e-12 75.1 62 58.1
Cc02_g07330 Coffea canephora HOM05D002081 ORTHO05D002088 5.6e-12 74.7 62 58.1
DCAR_027588 Daucus carota HOM05D002081 ORTHO05D002088 5.6e-12 74.7 62 59.7
Sed0012888 Sechium edule HOM05D002081 ORTHO05D002088 5.6e-12 74.7 62 59.7
TPR.G25857 Trifolium pratense HOM05D002081 ORTHO05D002088 5.6e-12 74.7 62 61.3
Ca_05907_v3 Cicer arietinum L. HOM05D002081 ORTHO05D002088 7.3e-12 74.3 62 61.3
Nitab4.5_0008497g0010 Nicotiana tabacum HOM05D002081 ORTHO05D002088 7.3e-12 74.3 62 58.1
Rhsim03G0136700 Rhododendron simsii HOM05D002081 ORTHO05D002088 7.3e-12 74.3 58 62.1
SHI03706 Sapria himalayana HOM05D002081 ORTHO05D002088 7.3e-12 74.3 56 62.5
CiPaw.02G187300 Carya illinoinensis HOM05D002081 ORTHO05D002088 9.5e-12 73.9 62 58.1
Sed0003628 Sechium edule HOM05D002081 ORTHO05D002088 9.5e-12 73.9 62 58.1
Nitab4.5_0000987g0040 Nicotiana tabacum HOM05D002081 ORTHO05D002088 1.2e-11 73.6 62 58.1
CAN.G1184.5 Capsicum annuum HOM05D002081 ORTHO05D002088 1.6e-11 73.2 62 51.6
MELO3C008246.2 Cucumis melo HOM05D002081 ORTHO05D002088 1.6e-11 73.2 62 58.1
Gohir.A05G302300 Gossypium hirsutum HOM05D002081 ORTHO05D002088 1.6e-11 73.2 58 62.1
Psat2g038920 Pisum sativum HOM05D002081 ORTHO05D002088 1.6e-11 73.2 62 59.7
Ah.16g102690 Amaranthus hybridus HOM05D001947 ORTHO05D002440 2.1e-11 72.8 55 65.5
CsaV3_6G001420 Cucumis sativus L. HOM05D002081 ORTHO05D002088 2.1e-11 72.8 62 58.1
Psat5g128720 Pisum sativum HOM05D002081 ORTHO05D002088 2.1e-11 72.8 62 58.1
Hund13800 Selenicereus undatus HOM05D002081 ORTHO05D002088 2.1e-11 72.8 54 66.7
Rhsim09G0168000 Rhododendron simsii HOM05D002081 ORTHO05D002088 2.8e-11 72.4 62 56.5
Rhsim09G0168900 Rhododendron simsii HOM05D002081 ORTHO05D002088 2.8e-11 72.4 62 56.5
ClCG11G006590 Citrullus lanatus HOM05D002081 ORTHO05D002088 3.6e-11 72.0 62 56.5
FAN03G2328 Fragaria x ananassa HOM05D002081 ORTHO05D002088 3.6e-11 72.0 62 53.2
Gohir.D05G301800 Gossypium hirsutum HOM05D002081 ORTHO05D002088 3.6e-11 72.0 58 60.3
Gorai.009G319900 Gossypium raimondii HOM05D002081 ORTHO05D002088 3.6e-11 72.0 58 60.3
Medtr3g069150 Medicago truncatula HOM05D002081 ORTHO05D002088 3.6e-11 72.0 62 56.5
Medtr3g069170 Medicago truncatula HOM05D002081 ORTHO05D002088 3.6e-11 72.0 62 56.5
EL10Ac2g04688 Beta vulgaris HOM05D002081 ORTHO05D002088 6.2e-11 71.2 55 63.6
vmacro07036 Vaccinium macrocarpon HOM05D002081 ORTHO05D002088 6.2e-11 71.2 62 58.1
AUR62012147 Chenopodium quinoa HOM05D002081 ORTHO05D002088 8.1e-11 70.9 55 63.6
AUR62040688 Chenopodium quinoa HOM05D002081 ORTHO05D002088 8.1e-11 70.9 55 63.6
Migut.F01287 Erythranthe guttata HOM05D002081 ORTHO05D002088 8.1e-11 70.9 62 54.8
Eucgr.G02991 Eucalyptus grandis HOM05D002081 ORTHO05D002088 8.1e-11 70.9 62 59.7
MD01G1140300 Malus domestica HOM05D002081 ORTHO05D002088 8.1e-11 70.9 63 58.7
Medtr5g081040 Medicago truncatula HOM05D002081 ORTHO05D002088 8.1e-11 70.9 62 56.5
QL08p061675 Quercus lobata HOM05D002081 ORTHO05D002088 8.1e-11 70.9 62 54.8
Sopen05g031450 Solanum pennellii HOM05D002081 ORTHO05D002088 8.1e-11 70.9 58 51.7
unitig_27.g25068 Utricularia gibba HOM05D002081 ORTHO05D002088 8.1e-11 70.9 62 56.5
VMungo1383G3669 Vigna mungo HOM05D002081 ORTHO05D002088 8.1e-11 70.9 61 57.4
Nn8g40432 Nelumbo nucifera HOM05D011946 ORTHO05D015716 1.1e-10 70.5 52 76.9
MD07G1204600 Malus domestica HOM05D002081 ORTHO05D002088 1.4e-10 70.1 63 58.7
Phvul.001G237000 Phaseolus vulgaris HOM05D002081 ORTHO05D002088 1.4e-10 70.1 61 55.7
Atru.chr12.309 Acer truncatum HOM05D002081 ORTHO05D002088 1.8e-10 69.7 62 53.2
Atru.chr12.338 Acer truncatum HOM05D002081 ORTHO05D002088 1.8e-10 69.7 62 53.2
Hund16051 Selenicereus undatus HOM05D002081 ORTHO05D002088 1.8e-10 69.7 56 62.5
Solyc05g052930.3 Solanum lycopersicum HOM05D002081 ORTHO05D002088 1.8e-10 69.7 58 51.7
PGSC0003DMG400027135 Solanum tuberosum HOM05D002081 ORTHO05D002088 1.8e-10 69.7 58 51.7
TPR.G10328 Trifolium pratense HOM05D002081 ORTHO05D002088 1.8e-10 69.7 62 54.8
MSTRG.261 Avicennia marina HOM05D002081 ORTHO05D002088 3.1e-10 68.9 62 51.6
CARHR134690 Cardamine hirsuta HOM05D002081 ORTHO05D002088 5.2e-10 68.2 62 51.6
CDE04G2263 Ceratophyllum demersum HOM05D001947 ORTHO05D002440 5.2e-10 68.2 57 57.9
DCAR_024872 Daucus carota HOM05D002081 ORTHO05D002088 5.2e-10 68.2 55 58.2
Thhalv10017061m.g Eutrema salsugineum HOM05D002081 ORTHO05D002088 5.2e-10 68.2 62 50.0
Potri.010G198300 Populus trichocarpa HOM05D002081 ORTHO05D002088 5.2e-10 68.2 62 56.5
BcaB01g03572 Brassica carinata HOM05D002081 ORTHO05D002088 6.8e-10 67.8 62 50.0
A03p22300 Brassica napus HOM05D002081 ORTHO05D002088 6.8e-10 67.8 62 50.0
BraA03t11462Z Brassica rapa HOM05D002081 ORTHO05D002088 6.8e-10 67.8 62 50.0
Sabra08G0044400 Salix brachista HOM05D002081 ORTHO05D002088 6.8e-10 67.8 62 53.2
A04p30240 Brassica napus HOM05D002081 ORTHO05D002088 8.9e-10 67.4 62 50.0
BolC3t15026H Brassica oleracea HOM05D002081 ORTHO05D002088 8.9e-10 67.4 62 50.0
BraA04t18484Z Brassica rapa HOM05D002081 ORTHO05D002088 8.9e-10 67.4 62 50.0
C04p67620 Brassica napus HOM05D002081 ORTHO05D002088 1.2e-09 67.0 62 50.0
BolC4t28261H Brassica oleracea HOM05D002081 ORTHO05D002088 1.2e-09 67.0 62 50.0
SGA_v2.0_scaffold2G00987 Striga asiatica HOM05D002081 ORTHO05D002088 1.2e-09 67.0 62 50.0
ATR0559G126 Amborella trichopoda HOM05D002081 ORTHO05D002088 1.5e-09 66.6 62 53.2
Manes.07G120704 Manihot esculenta HOM05D002081 ORTHO05D002088 1.5e-09 66.6 62 53.2
SalBow6G3204 Salvia bowleyana HOM05D002081 ORTHO05D002088 2.0e-09 66.2 60 58.3
SalBow6G3476 Salvia bowleyana HOM05D002081 ORTHO05D002088 2.0e-09 66.2 60 58.3
AT2G39805 Arabidopsis thaliana HOM05D002081 ORTHO05D002088 2.6e-09 65.9 62 48.4
C03p26400 Brassica napus HOM05D002081 ORTHO05D002088 2.6e-09 65.9 62 48.4
Sp4g22090 Schrenkiella parvula HOM05D002081 ORTHO05D002088 2.6e-09 65.9 62 50.0
AL4G37350 Arabidopsis lyrata HOM05D002081 ORTHO05D002088 3.4e-09 65.5 62 48.4
THA.LOC104808815 Tarenaya hassleriana HOM05D002081 ORTHO05D002088 3.4e-09 65.5 62 50.0
BcaC01g05463 Brassica carinata HOM05D002081 ORTHO05D002088 4.4e-09 65.1 60 50.0
Aa31LG5G19810 Aethionema arabicum HOM05D002081 ORTHO05D002088 5.8e-09 64.7 62 46.8
Carub.0004s2191 Capsella rubella HOM05D002081 ORTHO05D002088 5.8e-09 64.7 62 48.4
Potri.008G060300 Populus trichocarpa HOM05D002081 ORTHO05D002088 5.8e-09 64.7 62 51.6
MSTRG.8286 Avicennia marina HOM05D002081 ORTHO05D002088 1.1e-07 60.5 49 59.2
HanXRQChr08g0221211 Helianthus annuus HOM05D002081 ORTHO05D002088 1.1e-07 60.5 60 46.7
ECA233G1873 Erigeron canadensis HOM05D002081 ORTHO05D002088 1.4e-07 60.1 62 45.2
Sabra10G0152600 Salix brachista HOM05D002081 ORTHO05D002088 4.1e-07 58.5 62 46.8
Os05g0455800 Oryza sativa ssp. japonica HOM05D002081 ORTHO05D002088 7.1e-07 57.8 52 55.8
Lsat_1_v5_gn_8_14680 Lactuca sativa HOM05D002081 ORTHO05D002088 9.2e-07 57.4 62 45.2
HPP92_003399 Vanilla planifolia HOM05D002081 ORTHO05D002088 1.2e-06 57.0 62 43.5
arahy.Tifrunner.gnm1.ann1.KXA9QZ Arachis hypogaea HOM05D002081 ORTHO05D002088 1.6e-06 56.6 55 50.9
arahy.Tifrunner.gnm1.ann1.FCQ45K Arachis hypogaea HOM05D002081 ORTHO05D002088 2.1e-06 56.2 55 50.9
HPP92_003418 Vanilla planifolia HOM05D002081 ORTHO05D002088 3.5e-06 55.5 62 41.9
SEGI_37536 Sequoiadendron giganteum HOM05D002081 ORTHO05D002088 6.0e-06 54.7 58 44.8


User provided reference genes

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