Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15720 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.1e-26 122.5 59 100.0
Nn2g14668 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.6e-25 118.6 58 96.6
Nn1g06924 Nelumbo nucifera HOM05D003463 ORTHO05D004206 4.6e-25 117.1 58 94.8
Nn7g36849 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.8e-24 115.2 58 94.8
Nn1g03744 Nelumbo nucifera HOM05D003463 ORTHO05D004206 8.2e-22 106.3 58 84.5
TAR629G1280 Trochodendron aralioides HOM05D003463 ORTHO05D004206 2.4e-21 104.8 58 84.5
Dinv10901 Davidia involucrata HOM05D003463 ORTHO05D004206 3.1e-21 104.4 58 79.3
Dinv18548 Davidia involucrata HOM05D003463 ORTHO05D004206 5.3e-21 103.6 58 77.6
Rhsim06G0155700 Rhododendron simsii HOM05D003463 ORTHO05D004206 1.5e-20 102.1 58 75.9
Hma1.2p1_1378F.1_g279185 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 2.6e-20 101.3 58 77.6
vmacro12241 Vaccinium macrocarpon HOM05D003463 ORTHO05D004206 2.6e-20 101.3 58 74.1
CiPaw.03G164300 Carya illinoinensis HOM05D003463 ORTHO05D004206 4.5e-20 100.5 58 77.6
Glyma.13G305000 Glycine max HOM05D003463 ORTHO05D004206 4.5e-20 100.5 58 77.6
Nn5g27118 Nelumbo nucifera HOM05D003463 ORTHO05D004206 7.7e-20 99.8 52 88.5
Nn5g27120 Nelumbo nucifera HOM05D003463 ORTHO05D004206 7.7e-20 99.8 52 88.5
Glyma.12G196800 Glycine max HOM05D003463 ORTHO05D004206 1.0e-19 99.4 58 75.9
Hma1.2p1_2477F.1_g322850 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 1.0e-19 99.4 58 75.9
Ciclev10014009m.g Citrus clementina HOM05D003463 ORTHO05D004206 1.3e-19 99.0 58 75.9
Oeu011067.1 Olea europaea HOM05D003463 ORTHO05D004206 1.3e-19 99.0 58 74.1
TAR627G0487 Trochodendron aralioides HOM05D003463 ORTHO05D004206 1.3e-19 99.0 58 77.6
CSS0043747 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 1.7e-19 98.6 58 74.1
COL.COLO4_13026 Corchorus olitorius HOM05D003463 ORTHO05D004206 1.7e-19 98.6 58 75.9
Haze_12964 Corylus avellana HOM05D003463 ORTHO05D004206 1.7e-19 98.6 58 75.9
Thecc.02G164300 Theobroma cacao HOM05D003463 ORTHO05D004206 1.7e-19 98.6 58 75.9
Lj3g0003812 Lotus japonicus HOM05D003463 ORTHO05D004206 2.2e-19 98.2 58 72.4
QL08p034245 Quercus lobata HOM05D003463 ORTHO05D004206 2.2e-19 98.2 58 70.7
TPR.G30794 Trifolium pratense HOM05D003463 ORTHO05D004206 2.2e-19 98.2 58 75.9
Peaxi162Scf00007g01417 Petunia axillaris HOM05D003463 ORTHO05D004206 2.9e-19 97.8 58 74.1
Phvul.005G112000 Phaseolus vulgaris HOM05D003463 ORTHO05D004206 2.9e-19 97.8 58 75.9
Ca_01564_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 3.8e-19 97.4 58 72.4
VMungo1080G1634 Vigna mungo HOM05D003463 ORTHO05D004206 3.8e-19 97.4 58 75.9
Actinidia12489 Actinidia chinensis HOM05D003463 ORTHO05D004206 5.0e-19 97.1 58 72.4
CSS0001270 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 5.0e-19 97.1 58 72.4
GSVIVG01030649001 Vitis vinifera HOM05D003463 ORTHO05D004206 5.0e-19 97.1 58 75.9
Cfa014461 Carpinus fangiana HOM05D003463 ORTHO05D004206 6.5e-19 96.7 58 74.1
CiPaw.04G119100 Carya illinoinensis HOM05D003463 ORTHO05D004206 6.5e-19 96.7 58 72.4
Lalb_Chr14g0375591 Lupinus albus HOM05D003463 ORTHO05D004206 6.5e-19 96.7 58 72.4
Duzib248G0717 Durio zibethinus HOM05D003463 ORTHO05D004206 8.5e-19 96.3 58 70.7
Glyma.06G301900 Glycine max HOM05D003463 ORTHO05D004206 8.5e-19 96.3 58 75.9
CSS0019318 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 1.1e-18 95.9 58 74.1
Duzib052G0139 Durio zibethinus HOM05D003463 ORTHO05D004206 1.1e-18 95.9 58 72.4
Solyc07g052940.4 Solanum lycopersicum HOM05D003463 ORTHO05D004206 1.1e-18 95.9 58 70.7
Sopen07g026490 Solanum pennellii HOM05D003463 ORTHO05D004206 1.1e-18 95.9 58 70.7
TPR.G19054 Trifolium pratense HOM05D003463 ORTHO05D004206 1.1e-18 95.9 58 74.1
TWI36G1584 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 1.1e-18 95.9 58 75.9
CSS0039700 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 1.4e-18 95.5 58 72.4
TWI18G0507 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 1.4e-18 95.5 58 74.1
Psat0s3330g0040 Pisum sativum HOM05D003463 ORTHO05D004206 1.9e-18 95.1 58 70.7
Eucgr.E02490 Eucalyptus grandis HOM05D003463 ORTHO05D004206 3.2e-18 94.4 58 70.7
Glyma.12G102400 Glycine max HOM05D003463 ORTHO05D004206 3.2e-18 94.4 58 74.1
Ca_20672_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 4.2e-18 94.0 58 70.7
Lj1C753T3 Lonicera japonica HOM05D003463 ORTHO05D004206 5.5e-18 93.6 58 70.7
Medtr4g045743 Medicago truncatula HOM05D003463 ORTHO05D004206 5.5e-18 93.6 58 72.4
BcaB02g07835 Brassica carinata HOM05D003463 ORTHO05D004206 7.2e-18 93.2 58 65.5
CAN.G86.25 Capsicum annuum HOM05D003463 ORTHO05D004206 7.2e-18 93.2 58 67.2
CDE11G1115 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 7.2e-18 93.2 57 70.2
DCAR_021199 Daucus carota HOM05D003463 ORTHO05D004206 9.4e-18 92.8 58 69.0
Oeu035823.1 Olea europaea HOM05D003463 ORTHO05D004206 9.4e-18 92.8 58 70.7
A01p22340 Brassica napus HOM05D003463 ORTHO05D004206 1.2e-17 92.4 58 65.5
BraA01t02149Z Brassica rapa HOM05D003463 ORTHO05D004206 1.2e-17 92.4 58 65.5
Nitab4.5_0001134g0130 Nicotiana tabacum HOM05D003463 ORTHO05D004206 1.2e-17 92.4 58 69.0
BcaC08g44245 Brassica carinata HOM05D003463 ORTHO05D004206 1.6e-17 92.0 58 65.5
BcaNung00300 Brassica carinata HOM05D003463 ORTHO05D004206 1.6e-17 92.0 58 65.5
Psat7g193080 Pisum sativum HOM05D003463 ORTHO05D004206 1.6e-17 92.0 57 71.9
Potri.007G119300 Populus trichocarpa HOM05D003463 ORTHO05D004206 1.6e-17 92.0 58 65.5
Prupe.3G222600 Prunus persica HOM05D003463 ORTHO05D004206 2.1e-17 91.7 58 72.4
SalBow7G2865 Salvia bowleyana HOM05D003463 ORTHO05D004206 2.1e-17 91.7 58 72.4
BcaC09g50202 Brassica carinata HOM05D003463 ORTHO05D004206 2.7e-17 91.3 58 65.5
C01p27890 Brassica napus HOM05D003463 ORTHO05D004206 2.7e-17 91.3 58 65.5
BolC1t02722H Brassica oleracea HOM05D003463 ORTHO05D004206 2.7e-17 91.3 58 65.5
Migut.M00384 Erythranthe guttata HOM05D003463 ORTHO05D004206 2.7e-17 91.3 58 74.1
Eucgr.A01739 Eucalyptus grandis HOM05D003463 ORTHO05D004206 2.7e-17 91.3 58 69.0
Thhalv10024183m.g Eutrema salsugineum HOM05D003463 ORTHO05D004206 2.7e-17 91.3 58 65.5
Gohir.D02G186400 Gossypium hirsutum HOM05D003463 ORTHO05D004206 2.7e-17 91.3 58 70.7
Gorai.005G208600 Gossypium raimondii HOM05D003463 ORTHO05D004206 2.7e-17 91.3 58 70.7
Sp7g13400 Schrenkiella parvula HOM05D003463 ORTHO05D004206 2.7e-17 91.3 58 65.5
A05p17060 Brassica napus HOM05D003463 ORTHO05D004206 3.6e-17 90.9 58 63.8
C06p16490 Brassica napus HOM05D003463 ORTHO05D004206 3.6e-17 90.9 58 63.8
BolC6t36852H Brassica oleracea HOM05D003463 ORTHO05D004206 3.6e-17 90.9 58 63.8
BraA05t20607Z Brassica rapa HOM05D003463 ORTHO05D004206 3.6e-17 90.9 58 63.8
Gohir.A03G162950 Gossypium hirsutum HOM05D003463 ORTHO05D004206 3.6e-17 90.9 58 69.0
Medtr2g089080 Medicago truncatula HOM05D003463 ORTHO05D004206 3.6e-17 90.9 58 72.4
FvH4_6g43760 Fragaria vesca HOM05D003463 ORTHO05D004206 4.6e-17 90.5 58 70.7
FAN05G2372 Fragaria x ananassa HOM05D003463 ORTHO05D004206 4.6e-17 90.5 58 70.7
FAN14G1979 Fragaria x ananassa HOM05D003463 ORTHO05D004206 4.6e-17 90.5 58 70.7
Lj3g0021154 Lotus japonicus HOM05D003463 ORTHO05D004206 4.6e-17 90.5 58 67.2
Manes.13G074400 Manihot esculenta HOM05D003463 ORTHO05D004206 4.6e-17 90.5 58 70.7
Sc21g0001820 Simmondsia chinensis HOM05D003463 ORTHO05D004206 4.6e-17 90.5 58 65.5
Atru.chr6.3118 Acer truncatum HOM05D003463 ORTHO05D004206 6.1e-17 90.1 58 69.0
CDE05G3394 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 6.1e-17 90.1 55 69.1
Lalb_Chr19g0135651 Lupinus albus HOM05D003463 ORTHO05D004206 6.1e-17 90.1 58 72.4
PSO541G5151 Papaver somniferum HOM05D003463 ORTHO05D004206 6.1e-17 90.1 58 67.2
PSO675G4322 Papaver somniferum HOM05D003463 ORTHO05D004206 6.1e-17 90.1 58 67.2
FAN02G4525 Fragaria x ananassa HOM05D003463 ORTHO05D004206 1.0e-16 89.4 58 69.0
FAN09G4547 Fragaria x ananassa HOM05D003463 ORTHO05D004206 1.0e-16 89.4 58 67.2
Aqoxy4G01913 Aquilegia oxysepala HOM05D003463 ORTHO05D004206 1.4e-16 89.0 58 69.0
Nitab4.5_0003429g0030 Nicotiana tabacum HOM05D003463 ORTHO05D004206 1.8e-16 88.6 58 67.2
Potri.017G041100 Populus trichocarpa HOM05D003463 ORTHO05D004206 2.3e-16 88.2 58 67.2
Cpa.g.sc8.254 Carica papaya HOM05D003463 ORTHO05D004206 3.0e-16 87.8 48 79.2
CANSAT64G0087 Cannabis sativa HOM05D003463 ORTHO05D004206 3.9e-16 87.4 58 69.0
ClCG02G001610 Citrullus lanatus HOM05D003463 ORTHO05D004206 5.1e-16 87.0 58 69.0
MD17G1091000 Malus domestica HOM05D003463 ORTHO05D004206 5.1e-16 87.0 58 67.2
RcHm_v2.0_Chr2g0160501 Rosa chinensis HOM05D003463 ORTHO05D004206 5.1e-16 87.0 58 67.2
ATR0804G005 Amborella trichopoda HOM05D003463 ORTHO05D004206 6.7e-16 86.7 58 63.8
AL7G40500 Arabidopsis lyrata HOM05D003463 ORTHO05D004206 6.7e-16 86.7 58 62.1
Ah.01g005040 Amaranthus hybridus HOM05D003463 ORTHO05D004206 8.8e-16 86.3 58 63.8
PGR042G2093 Punica granatum HOM05D003463 ORTHO05D004206 8.8e-16 86.3 58 67.2
Sabra17G0027900 Salix brachista HOM05D003463 ORTHO05D004206 8.8e-16 86.3 58 67.2
Sed0025509 Sechium edule HOM05D003463 ORTHO05D004206 1.5e-15 85.5 58 65.5
SGA_v2.0_scaffold34G13880 Striga asiatica HOM05D003463 ORTHO05D004206 1.5e-15 85.5 58 67.2
ECA233G2663 Erigeron canadensis HOM05D003463 ORTHO05D004206 1.9e-15 85.1 58 58.6
Cc05_g05330 Coffea canephora HOM05D003463 ORTHO05D004206 2.5e-15 84.7 58 62.1
MD09G1103200 Malus domestica HOM05D003463 ORTHO05D004206 2.5e-15 84.7 58 67.2
CARHR221910 Cardamine hirsuta HOM05D003463 ORTHO05D004206 3.3e-15 84.3 58 60.3
MELO3C018791.2 Cucumis melo HOM05D003463 ORTHO05D004206 3.3e-15 84.3 58 65.5
CsaV3_7G003880 Cucumis sativus L. HOM05D003463 ORTHO05D004206 3.3e-15 84.3 58 65.5
THA.LOC104808502 Tarenaya hassleriana HOM05D003463 ORTHO05D004206 3.3e-15 84.3 58 62.1
AT4G15180 Arabidopsis thaliana HOM05D003463 ORTHO05D004206 5.7e-15 83.6 58 60.3
HanXRQChr17g0563751 Helianthus annuus HOM05D003463 ORTHO05D004206 7.4e-15 83.2 58 60.3
EL10Ac9g22340 Beta vulgaris HOM05D003463 ORTHO05D004206 9.7e-15 82.8 59 62.7
Sed0018482 Sechium edule HOM05D003463 ORTHO05D004206 2.2e-14 81.6 58 63.8
Aa31LG8G8660 Aethionema arabicum HOM05D003463 ORTHO05D004206 2.8e-14 81.3 58 62.1
unitig_8.g4614 Utricularia gibba HOM05D003463 ORTHO05D004206 3.7e-14 80.9 58 58.6
HanXRQChr04g0111771 Helianthus annuus HOM05D003463 ORTHO05D004206 4.8e-14 80.5 58 60.3
Hund08062 Selenicereus undatus HOM05D003463 ORTHO05D004206 4.8e-14 80.5 58 60.3
Os08g0180100 Oryza sativa ssp. japonica HOM05D003463 ORTHO05D004206 6.3e-14 80.1 58 60.3
HanXRQChr14g0432881 Helianthus annuus HOM05D003463 ORTHO05D004206 8.2e-14 79.7 58 58.6
Lsat_1_v5_gn_8_129901 Lactuca sativa HOM05D003463 ORTHO05D004206 8.2e-14 79.7 58 56.9
RcHm_v2.0_Chr2g0131031 Rosa chinensis HOM05D003463 ORTHO05D004206 1.1e-13 79.3 58 62.1
HanXRQChr01g0020431 Helianthus annuus HOM05D002344 ORTHO05D004206 1.8e-13 78.6 58 58.6
Zm00001eb413080 Zea mays HOM05D003463 ORTHO05D004206 4.1e-13 77.4 58 56.9
Zm00001eb171790 Zea mays HOM05D003463 ORTHO05D004206 1.2e-12 75.9 58 55.2
Sc23g0004320 Simmondsia chinensis HOM05D000588 ORTHO05D000637 1.5e-12 75.5 58 56.9
DCAR_009696 Daucus carota HOM05D003463 ORTHO05D004206 3.4e-12 74.3 58 60.3
SHI10282 Sapria himalayana HOM05D003463 ORTHO05D004206 3.4e-12 74.3 58 53.4
SEGI_02831 Sequoiadendron giganteum HOM05D003463 ORTHO05D004206 1.1e-10 69.3 58 53.4
SMO135G0001 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 2.0e-07 58.5 57 45.6
SMO365G0046 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 2.0e-07 58.5 57 45.6
Mapoly0021s0105 Marchantia polymorpha HOM05D003463 ORTHO05D004206 1.3e-06 55.8 58 39.7
Pp3c11_18840 Physcomitrium patens HOM05D003463 ORTHO05D004206 3.7e-06 54.3 50 48.0


User provided reference genes

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