Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 2.4e-136 488.8 245 100.0
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 1.3e-92 343.6 501 43.7
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 4.1e-91 338.6 497 44.1
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 2.6e-82 309.3 623 36.3
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 2.5e-80 302.8 637 35.5
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 7.2e-80 301.2 637 35.2
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 9.4e-80 300.8 637 35.2
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 9.4e-80 300.8 637 34.9
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 3.6e-79 298.9 637 35.2
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 4.7e-79 298.5 559 37.2
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 6.1e-79 298.1 635 35.1
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 2.3e-78 296.2 637 34.7
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 6.7e-78 294.7 637 34.9
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 8.8e-78 294.3 637 34.5
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 1.1e-77 293.9 635 34.8
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 2.0e-77 293.1 637 34.5
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 2.6e-77 292.7 635 35.0
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 3.3e-77 292.4 637 34.5
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 7.4e-77 291.2 634 34.5
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 9.7e-77 290.8 637 34.4
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 1.3e-76 290.4 634 34.1
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 1.7e-76 290.0 637 34.2
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 1.7e-76 290.0 637 34.7
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 2.8e-76 289.3 637 34.2
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 2.8e-76 289.3 637 34.5
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 3.7e-76 288.9 637 34.2
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 8.2e-76 287.7 636 34.1
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 1.8e-75 286.6 647 34.2
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 3.1e-75 285.8 635 34.5
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 3.1e-75 285.8 637 33.9
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 5.3e-75 285.0 635 34.3
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 5.3e-75 285.0 637 34.1
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 7.0e-75 284.6 634 33.9
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 9.1e-75 284.3 633 34.4
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 9.1e-75 284.3 637 34.4
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 1.2e-74 283.9 637 33.8
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 1.2e-74 283.9 634 34.1
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 1.6e-74 283.5 637 33.8
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 4.5e-74 282.0 637 33.9
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 4.5e-74 282.0 637 34.2
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 5.9e-74 281.6 633 34.3
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 7.7e-74 281.2 631 33.6
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 1.0e-73 280.8 637 34.1
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 1.3e-73 280.4 637 33.4
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 3.8e-73 278.9 629 34.7
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 5.0e-73 278.5 635 33.4
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 5.0e-73 278.5 633 33.6
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 6.5e-73 278.1 633 33.3
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 6.5e-73 278.1 637 33.3
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 8.5e-73 277.7 637 33.6
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 8.5e-73 277.7 633 33.6
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 1.1e-72 277.3 637 33.4
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 1.1e-72 277.3 632 34.0
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 1.5e-72 276.9 622 33.6
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 2.5e-72 276.2 631 33.8
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 4.2e-72 275.4 637 33.4
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 4.2e-72 275.4 631 33.9
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 7.2e-72 274.6 622 33.3
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 1.2e-71 273.9 637 33.6
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 1.2e-71 273.9 635 33.1
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 1.2e-71 273.9 637 33.0
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 1.6e-71 273.5 637 32.7
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 2.1e-71 273.1 637 32.7
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 2.1e-71 273.1 635 33.2
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 3.6e-71 272.3 631 33.4
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 3.6e-71 272.3 633 32.9
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 4.7e-71 271.9 635 32.9
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 6.1e-71 271.6 637 32.5
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 1.0e-70 270.8 637 32.8
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 1.4e-70 270.4 636 32.7
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 1.4e-70 270.4 633 32.7
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 1.8e-70 270.0 633 32.7
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 2.3e-70 269.6 633 32.5
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 6.7e-70 268.1 631 33.1
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 1.2e-69 267.3 632 33.5
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 3.3e-69 265.8 617 32.7
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 5.7e-69 265.0 141 91.5
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 7.5e-69 264.6 664 31.9
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 9.7e-69 264.2 630 32.4
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 9.7e-69 264.2 630 33.2
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 1.7e-68 263.5 630 32.2
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 2.8e-68 262.7 634 32.0
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 2.8e-68 262.7 630 33.0
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 4.8e-68 261.9 635 31.8
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 6.3e-68 261.5 634 31.9
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 1.1e-67 260.8 630 32.1
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 1.1e-67 260.8 630 32.1
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 2.4e-67 259.6 632 32.0
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 4.1e-67 258.8 630 32.1
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 5.3e-67 258.5 630 31.9
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 5.3e-67 258.5 630 31.9
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 5.3e-67 258.5 630 31.9
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 5.3e-67 258.5 630 31.9
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 5.3e-67 258.5 632 32.0
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 7.0e-67 258.1 141 86.5
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 9.1e-67 257.7 630 31.9
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 2.0e-66 256.5 630 31.7
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 2.0e-66 256.5 630 31.7
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 2.0e-66 256.5 635 32.9
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 2.0e-66 256.5 630 31.9
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 2.7e-66 256.1 630 32.1
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 3.5e-66 255.8 141 87.2
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 3.5e-66 255.8 141 87.2
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 4.5e-66 255.4 628 32.2
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 7.7e-66 254.6 634 31.5
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 6.5e-65 251.5 141 83.7
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 6.5e-65 251.5 634 31.2
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 8.5e-65 251.1 141 85.8
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 1.5e-64 250.4 628 31.5
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 9.4e-64 247.7 628 30.9
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 9.4e-64 247.7 628 31.1
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 5.9e-58 228.4 153 71.9
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 1.2e-55 220.7 141 68.8
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 1.6e-55 220.3 141 75.9
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 9.2e-51 204.5 105 97.1
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.6e-50 203.8 144 72.2
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 5.0e-49 198.7 150 66.0
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 6.6e-49 198.4 105 93.3
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 8.6e-49 198.0 113 84.1
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 1.6e-47 193.7 142 66.9
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 2.1e-47 193.4 105 91.4
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 5.2e-46 188.7 105 90.5
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 6.8e-46 188.3 103 89.3
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.6e-45 186.4 105 85.7
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 5.7e-45 185.3 105 87.6
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.3e-44 184.1 103 87.4
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.3e-44 184.1 111 82.0
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.1e-43 181.0 103 85.4
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 7.8e-42 174.9 86 95.3
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.9e-41 172.6 105 80.0
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 5.0e-41 172.2 99 84.8
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 1.5e-40 170.6 98 86.7
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 9.5e-40 167.9 141 63.8
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 2.6e-37 159.8 142 59.9
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.2e-34 151.0 141 50.4
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 3.5e-34 149.4 101 74.3
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 4.6e-34 149.1 125 64.0
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 1.3e-33 147.5 89 80.9
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 1.7e-33 147.1 91 81.3
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 5.0e-33 145.6 91 80.2
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.4e-30 137.5 74 83.8
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 3.1e-30 136.3 164 43.3
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 3.3e-24 116.3 68 80.9
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 2.8e-23 113.2 142 40.1
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 1.6e-18 97.4 70 68.6
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 8.7e-17 91.7 63 68.3
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 1.9e-16 90.5 80 60.0
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 9.9e-13 78.2 56 64.3
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 9.9e-13 78.2 77 57.1
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 1.0e-09 68.2 151 27.8
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 6.6e-09 65.5 43 69.8


User provided reference genes

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