Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 0.0e+00 1332.0 656 100.0
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 9.3e-300 1033.1 663 78.7
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 4.6e-299 1030.8 663 77.2
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 2.1e-296 1021.9 601 81.4
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 3.6e-296 1021.1 623 79.1
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 1.4e-295 1019.2 659 76.3
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 5.8e-294 1013.8 667 77.5
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 4.9e-293 1010.7 603 81.6
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 1.9e-292 1008.8 614 79.8
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 2.4e-292 1008.4 614 79.8
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 1.6e-291 1005.7 581 82.4
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 2.7e-291 1005.0 581 83.0
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 6.0e-291 1003.8 663 75.0
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 7.9e-291 1003.4 636 76.3
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 2.3e-290 1001.9 593 81.1
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 3.0e-290 1001.5 636 76.3
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 1.5e-289 999.2 665 75.0
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 1.5e-289 999.2 567 83.8
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 2.5e-289 998.4 587 80.6
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 3.3e-289 998.0 608 79.1
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 3.7e-288 994.6 659 76.0
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 4.8e-288 994.2 607 79.4
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 1.8e-287 992.3 581 81.2
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 3.1e-287 991.5 661 74.3
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 5.3e-287 990.7 587 80.2
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.5e-286 989.2 573 81.3
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 3.4e-286 988.0 650 76.0
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 4.5e-286 987.6 587 79.7
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.5e-286 987.6 635 75.7
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 5.8e-286 987.3 665 73.4
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.3e-285 986.1 603 79.1
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.2e-285 985.3 593 79.9
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 3.8e-285 984.6 586 80.9
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 4.9e-285 984.2 645 74.9
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 8.4e-285 983.4 635 75.4
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 1.9e-284 982.2 600 79.0
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 2.4e-284 981.9 598 79.3
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 2.4e-284 981.9 665 74.0
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 3.2e-284 981.5 567 81.7
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 4.2e-284 981.1 609 77.7
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 1.2e-283 979.5 543 85.5
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 1.2e-283 979.5 679 72.6
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 1.2e-283 979.5 672 72.9
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.6e-283 979.2 567 81.8
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 7.9e-283 976.9 608 77.3
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 1.0e-282 976.5 582 80.8
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 1.8e-282 975.7 613 77.5
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 6.7e-282 973.8 608 77.1
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 7.4e-281 970.3 628 75.8
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 1.6e-280 969.1 588 78.7
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 4.8e-280 967.6 599 77.8
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.1e-279 966.5 579 80.0
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 3.1e-279 964.9 586 78.0
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 4.0e-279 964.5 579 80.1
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 1.5e-278 962.6 579 78.1
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 2.0e-278 962.2 579 79.8
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 2.6e-278 961.8 545 82.8
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 2.6e-278 961.8 543 83.4
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 2.6e-278 961.8 579 78.4
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 3.4e-278 961.4 587 78.0
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 4.5e-278 961.1 642 73.2
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 5.8e-278 960.7 584 78.3
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 1.0e-277 959.9 581 80.0
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 1.0e-277 959.9 609 76.7
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.7e-277 959.1 584 78.1
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 3.8e-277 958.0 581 78.3
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.4e-276 956.1 563 80.1
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 1.9e-276 955.7 579 78.6
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 2.5e-276 955.3 602 75.9
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 7.1e-276 953.7 593 76.9
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 9.3e-276 953.4 587 77.3
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 1.2e-275 953.0 565 79.6
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.6e-275 952.6 582 77.3
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 1.6e-275 952.6 577 79.2
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.7e-275 951.8 627 75.0
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 2.7e-275 951.8 604 76.5
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 3.5e-275 951.4 625 75.4
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 7.9e-275 950.3 588 76.7
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 1.8e-274 949.1 584 77.4
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 2.3e-274 948.7 528 86.0
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 5.1e-274 947.6 587 77.2
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 5.1e-274 947.6 609 75.9
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 1.5e-273 946.0 566 79.5
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 2.2e-272 942.2 599 75.3
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 3.7e-272 941.4 587 75.6
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 3.7e-272 941.4 754 66.3
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 1.8e-271 939.1 563 78.0
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 1.8e-271 939.1 654 72.3
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 5.3e-271 937.6 573 78.0
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 5.3e-271 937.6 554 79.4
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 9.0e-271 936.8 583 77.2
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 9.0e-271 936.8 582 76.3
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 1.2e-270 936.4 566 78.4
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.0e-269 933.3 574 76.8
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 2.2e-269 932.2 590 75.3
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 5.0e-269 931.0 570 77.2
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 8.5e-269 930.2 570 77.2
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 8.5e-269 930.2 583 76.7
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 8.5e-269 930.2 634 71.8
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 1.1e-268 929.9 590 75.3
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 1.1e-268 929.9 547 81.7
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 7.2e-268 927.2 532 82.9
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 1.3e-264 916.4 531 81.0
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 1.4e-263 912.9 579 75.6
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 3.4e-262 908.3 550 77.8
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 1.3e-261 906.4 583 75.3
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 6.5e-261 904.0 578 75.6
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 1.1e-260 903.3 578 75.4
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 3.7e-256 888.3 566 74.9
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.7e-253 879.4 551 75.1
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 1.3e-248 863.2 566 74.2
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 1.7e-248 862.8 582 72.0
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 2.6e-246 855.5 579 73.6
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 5.5e-244 847.8 493 82.2
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 1.0e-237 827.0 560 74.8
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 4.2e-236 821.6 547 70.0
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 7.2e-236 820.8 584 70.7
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 1.7e-232 809.7 607 64.3
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 8.3e-232 807.4 448 84.6
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 2.1e-227 792.7 448 83.9
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 2.8e-227 792.3 547 69.7
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.8e-223 779.6 566 72.8
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.1e-220 770.4 439 83.1
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 1.2e-209 733.8 517 69.6
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 4.0e-194 682.2 451 72.5
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 5.8e-185 651.7 538 59.7
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 2.9e-184 649.4 576 62.3
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 4.8e-179 632.1 361 82.5
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 7.6e-161 571.6 344 78.5
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 2.1e-150 537.0 324 79.6
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 8.8e-149 531.6 563 50.1
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 6.5e-144 515.4 418 64.6
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 2.5e-143 513.5 551 53.4
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 2.0e-140 503.8 278 86.7
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 7.7e-137 491.9 280 82.1
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 3.3e-132 476.5 317 74.8
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.2e-113 414.8 576 41.8
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 2.8e-102 377.1 288 62.5
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 6.6e-96 355.9 643 37.0
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.0e-88 330.5 179 89.4
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 1.1e-85 322.0 263 65.0
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 1.2e-84 318.5 184 81.0
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 4.9e-83 313.2 603 37.0
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 8.3e-83 312.4 179 82.7
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 7.8e-81 305.8 188 75.0
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 1.2e-78 298.5 167 84.4
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 5.2e-77 293.1 499 37.5
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 8.4e-75 285.8 586 33.8
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 2.9e-67 260.8 609 32.8
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 7.1e-66 256.1 140 87.1
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 5.6e-63 246.5 321 46.1
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 9.0e-61 239.2 595 30.9
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 2.1e-57 228.0 194 57.7
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.9e-51 207.6 117 83.8
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 7.1e-50 203.0 120 83.3
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.6e-49 201.8 121 78.5
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.7e-43 181.8 100 85.0
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 5.0e-43 180.3 107 78.5
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.3e-40 171.4 108 76.9
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 1.6e-38 165.2 155 55.5
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 2.8e-30 137.9 91 74.7
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 6.3e-30 136.7 77 77.9
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 6.9e-29 133.3 67 88.1
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 9.1e-29 132.9 65 95.4
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 2.1e-25 121.7 137 46.7
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 2.4e-21 108.2 64 79.7
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.1e-13 82.8 54 77.8
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 1.7e-11 75.5 68 58.8
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 3.8e-11 74.3 78 56.4
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 5.5e-10 70.5 59 59.3
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 9.4e-10 69.7 38 78.9
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 4.8e-06 57.4 70 45.7


User provided reference genes

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