Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 4.1e-282 974.2 522 100.0
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 3.0e-176 622.5 443 76.5
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.2e-162 575.9 428 73.6
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 9.7e-159 564.3 437 72.8
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.5e-156 555.4 444 70.0
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 1.0e-155 554.3 458 67.9
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 1.1e-154 550.8 497 64.2
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 3.2e-154 549.3 448 68.8
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 7.2e-154 548.1 436 69.5
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 1.6e-153 547.0 440 68.6
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 3.6e-153 545.8 441 71.9
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 4.7e-153 545.4 439 68.6
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 8.0e-153 544.7 442 68.3
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.0e-152 544.3 443 71.8
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 3.3e-151 539.3 457 65.0
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 1.3e-150 537.3 440 68.4
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.3e-150 537.3 440 68.4
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 1.3e-150 537.3 447 68.0
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 3.7e-150 535.8 443 66.6
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.8e-150 535.4 439 68.1
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 6.3e-150 535.0 440 68.2
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.1e-149 532.7 440 67.7
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 5.3e-149 531.9 440 67.5
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 9.1e-149 531.2 438 67.4
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 2.0e-148 530.0 441 66.4
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.1e-146 524.2 472 66.7
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 1.5e-146 523.9 439 66.1
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 4.2e-146 522.3 445 64.9
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 4.2e-146 522.3 445 64.9
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.7e-145 519.6 439 67.0
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 1.0e-144 517.7 444 64.4
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.0e-144 517.7 444 66.2
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 2.3e-144 516.5 442 64.7
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 2.6e-143 513.1 439 65.4
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 4.4e-143 512.3 448 64.5
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 4.4e-143 512.3 442 68.3
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 5.7e-143 511.9 437 64.8
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 9.7e-143 511.1 440 65.0
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.3e-142 510.8 443 65.9
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 1.3e-142 510.8 440 64.8
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 2.8e-142 509.6 443 65.7
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 1.4e-141 507.3 440 64.8
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 4.1e-141 505.8 444 63.5
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 5.3e-141 505.4 444 64.4
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 5.3e-141 505.4 440 64.5
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 5.3e-141 505.4 447 64.2
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 1.6e-140 503.8 446 62.6
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 4.5e-140 502.3 441 62.4
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 7.7e-140 501.5 427 68.1
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 3.8e-139 499.2 450 63.3
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 6.5e-139 498.4 438 63.2
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 8.5e-139 498.0 448 61.2
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 1.9e-138 496.9 436 63.5
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 9.4e-138 494.6 440 65.0
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 9.4e-138 494.6 436 63.8
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 1.6e-137 493.8 438 63.2
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 3.6e-137 492.7 447 61.5
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 8.0e-137 491.5 451 62.7
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 1.0e-136 491.1 448 62.7
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 1.8e-136 490.3 445 63.1
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 2.3e-136 490.0 443 63.0
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 2.3e-136 490.0 443 63.4
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 2.3e-136 490.0 442 62.4
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 3.4e-135 486.1 445 62.7
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 7.5e-135 485.0 454 60.8
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 1.7e-134 483.8 456 60.3
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 2.2e-134 483.4 445 60.9
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.8e-134 483.0 439 62.9
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.8e-134 483.0 439 62.9
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 4.8e-134 482.3 448 61.2
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 1.1e-133 481.1 488 58.6
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 1.4e-133 480.7 438 61.9
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 1.8e-133 480.3 438 64.6
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 9.1e-133 478.0 436 62.2
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 1.2e-132 477.6 454 60.4
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 5.9e-132 475.3 454 59.9
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 8.6e-131 471.5 436 60.8
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 4.2e-130 469.2 442 62.2
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 4.2e-130 469.2 457 60.2
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 9.5e-130 468.0 445 61.3
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 9.5e-130 468.0 458 59.2
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.2e-129 467.6 450 60.7
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 1.6e-129 467.2 446 61.4
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 3.6e-129 466.1 436 61.2
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 4.0e-128 462.6 446 59.4
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 2.0e-127 460.3 443 58.9
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 3.4e-127 459.5 475 57.5
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 4.9e-126 455.7 441 57.8
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 6.3e-126 455.3 497 55.3
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.1e-125 454.5 438 59.6
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 7.0e-125 451.8 428 61.4
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 1.3e-123 447.6 440 62.5
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 2.9e-123 446.4 458 57.6
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 2.9e-123 446.4 438 59.4
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 8.6e-123 444.9 460 57.2
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 8.6e-123 444.9 458 57.9
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 1.5e-122 444.1 443 57.8
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.9e-122 443.7 440 58.9
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 7.3e-122 441.8 460 57.0
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 1.6e-121 440.7 428 58.6
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 8.9e-120 434.9 458 56.8
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 2.9e-118 429.9 440 56.1
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 6.0e-116 422.2 436 58.3
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 6.6e-115 418.7 461 54.9
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.9e-114 417.2 383 58.7
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 4.3e-114 416.0 437 57.4
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 9.5e-114 414.8 428 56.8
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 1.4e-109 401.0 472 51.1
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 2.4e-109 400.2 445 57.3
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 5.4e-109 399.1 313 71.9
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.1e-106 391.3 438 53.7
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 9.5e-106 388.3 443 53.3
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 7.1e-101 372.1 437 52.9
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 1.3e-99 367.9 386 57.8
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 5.6e-98 362.5 306 67.3
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 2.4e-96 357.1 426 51.6
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 3.2e-93 346.7 375 55.7
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.5e-92 343.2 372 54.8
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 2.4e-88 330.5 504 43.8
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 2.2e-86 323.9 436 46.8
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 8.4e-86 322.0 478 45.4
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 1.2e-76 291.6 308 58.4
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 1.5e-74 284.6 317 53.3
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 2.7e-68 263.8 169 77.5
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.3e-66 256.9 439 42.8
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 2.1e-65 254.2 211 66.8
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 2.8e-65 253.8 439 42.8
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 2.3e-59 234.2 261 55.2
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 2.3e-59 234.2 261 55.2
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 6.7e-59 232.6 137 84.7
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 9.0e-56 222.2 355 45.6
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.3e-54 218.4 335 42.4
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.5e-45 187.6 190 56.3
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 5.9e-39 166.4 319 38.6
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 5.2e-35 153.3 115 67.0
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 7.4e-34 149.4 91 81.3
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.7e-33 147.1 83 85.5
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 4.1e-32 143.7 140 55.0
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 4.1e-32 143.7 140 55.0
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 1.2e-31 142.1 429 33.8
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 3.8e-30 137.1 74 85.1
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 9.4e-29 132.5 69 91.3
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 3.6e-28 130.6 179 46.9
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 2.0e-26 124.8 121 57.0
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.4e-26 124.0 285 34.0
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 7.5e-26 122.9 94 68.1
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 1.7e-25 121.7 68 83.8
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 2.3e-19 101.3 128 53.1
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 1.1e-16 92.4 520 26.2
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 8.0e-12 76.3 62 64.5
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 2.6e-10 71.2 132 42.4
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 4.4e-10 70.5 92 48.9
CDE07G1284 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.8e-08 65.1 125 40.0
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 1.8e-08 65.1 69 52.2


User provided reference genes

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