Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g15375 Nelumbo nucifera HOM05D003353 ORTHO05D003751 2.5e-47 191.8 99 100.0
Nn4g22812 Nelumbo nucifera HOM05D003353 ORTHO05D003751 4.7e-38 161.0 98 85.7
Nn3g16906 Nelumbo nucifera HOM05D003353 ORTHO05D003751 1.5e-31 139.4 98 72.4
TAR371G0580 Trochodendron aralioides HOM05D003353 ORTHO05D003751 1.1e-23 113.2 98 62.2
TAR629G0276 Trochodendron aralioides HOM05D003353 ORTHO05D003751 9.5e-23 110.2 102 59.8
CiPaw.03G037100 Carya illinoinensis HOM05D003353 ORTHO05D003751 2.4e-18 95.5 102 52.0
QL02p076799 Quercus lobata HOM05D003353 ORTHO05D003751 3.2e-18 95.1 102 52.0
PSO063G6215 Papaver somniferum HOM05D003353 ORTHO05D003751 9.2e-18 93.6 99 51.5
PSO832G1186 Papaver somniferum HOM05D003353 ORTHO05D003751 9.2e-18 93.6 99 51.5
RcHm_v2.0_Chr2g0171081 Rosa chinensis HOM05D003353 ORTHO05D003751 6.0e-17 90.9 101 51.5
Prupe.3G283100 Prunus persica HOM05D003353 ORTHO05D003751 7.8e-17 90.5 95 53.7
Glyma.13G170000 Glycine max HOM05D003353 ORTHO05D003751 3.9e-16 88.2 102 51.0
Haze_14661 Corylus avellana HOM05D003353 ORTHO05D003751 1.9e-15 85.9 102 49.0
GSVIVG01032492001 Vitis vinifera HOM05D003353 ORTHO05D003751 1.9e-15 85.9 102 51.0
ATR0691G050 Amborella trichopoda HOM05D003353 ORTHO05D003751 5.6e-15 84.3 99 45.5
MD17G1035500 Malus domestica HOM05D003353 ORTHO05D003751 7.3e-15 84.0 99 46.5
FvH4_6g50560 Fragaria vesca HOM05D003353 ORTHO05D003751 1.2e-14 83.2 71 57.7
FAN14G4206 Fragaria x ananassa HOM05D003353 ORTHO05D003751 1.2e-14 83.2 71 57.7
MD09G1035200 Malus domestica HOM05D003353 ORTHO05D003751 2.8e-14 82.0 99 46.5
CiPaw.04G024200 Carya illinoinensis HOM05D003353 ORTHO05D003751 4.7e-14 81.3 99 47.5
Glyma.19G010200 Glycine max HOM05D003353 ORTHO05D003751 4.7e-14 81.3 102 48.0
FAN02G2799 Fragaria x ananassa HOM05D003353 ORTHO05D003751 6.2e-14 80.9 101 45.5
Phvul.004G017600 Phaseolus vulgaris HOM05D003353 ORTHO05D003751 8.1e-14 80.5 102 49.0
VMungo0464G0152 Vigna mungo HOM05D003353 ORTHO05D003751 1.1e-13 80.1 102 49.0
Cfa007435 Carpinus fangiana HOM05D003353 ORTHO05D003751 1.4e-13 79.7 102 46.1
Lalb_Chr02g0160231 Lupinus albus HOM05D003353 ORTHO05D003751 1.8e-13 79.3 99 45.5
Lalb_Chr21g0319411 Lupinus albus HOM05D003353 ORTHO05D003751 2.3e-13 79.0 99 45.5
GSVIVG01020232001 Vitis vinifera HOM05D003353 ORTHO05D003751 2.3e-13 79.0 96 56.2
Aqoxy3G02993 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 3.1e-13 78.6 101 43.6
CANSAT64G0328 Cannabis sativa HOM05D003353 ORTHO05D003751 3.1e-13 78.6 98 49.0
FAN09G4608 Fragaria x ananassa HOM05D003353 ORTHO05D003751 3.1e-13 78.6 71 54.9
arahy.Tifrunner.gnm1.ann1.S45US4 Arachis hypogaea HOM05D003353 ORTHO05D003751 4.0e-13 78.2 95 46.3
Ciclev10014026m.g Citrus clementina HOM05D003353 ORTHO05D003751 4.0e-13 78.2 95 45.3
Dinv24865 Davidia involucrata HOM05D003353 ORTHO05D003751 8.9e-13 77.0 102 46.1
Dinv35052 Davidia involucrata HOM05D003353 ORTHO05D003751 8.9e-13 77.0 102 43.1
Cpa.g.sc215.7 Carica papaya HOM05D003353 ORTHO05D003751 1.2e-12 76.6 101 46.5
Actinidia06029 Actinidia chinensis HOM05D003353 ORTHO05D003751 2.0e-12 75.9 101 43.6
TWI36G0997 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 7.5e-12 73.9 76 52.6
Lj2g0012220 Lotus japonicus HOM05D003353 ORTHO05D003751 2.2e-11 72.4 98 42.9
Thecc.04G008000 Theobroma cacao HOM05D003353 ORTHO05D003751 2.2e-11 72.4 102 43.1
TWI12G0214 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 2.2e-11 72.4 91 48.4
Lalb_Chr06g0176091 Lupinus albus HOM05D003353 ORTHO05D003751 3.7e-11 71.6 99 45.5
Atru.chr6.2192 Acer truncatum HOM05D003353 ORTHO05D003751 4.9e-11 71.2 102 43.1
Duzib147G1510 Durio zibethinus HOM05D003353 ORTHO05D003751 1.1e-10 70.1 102 43.1
Gohir.A09G026000 Gossypium hirsutum HOM05D003353 ORTHO05D003751 1.1e-10 70.1 102 43.1
Gohir.D09G025300 Gossypium hirsutum HOM05D003353 ORTHO05D003751 1.1e-10 70.1 102 43.1
Gorai.006G029600 Gossypium raimondii HOM05D003353 ORTHO05D003751 1.1e-10 70.1 102 43.1
TPR.G2281 Trifolium pratense HOM05D003353 ORTHO05D003751 1.1e-10 70.1 59 57.6
CDE10G0339 Ceratophyllum demersum HOM05D003353 ORTHO05D003751 3.2e-10 68.6 100 41.0
Dinv15308 Davidia involucrata HOM05D003353 ORTHO05D003751 3.2e-10 68.6 73 54.8
Psat1g059480 Pisum sativum HOM05D003353 ORTHO05D003751 4.1e-10 68.2 59 57.6
TPR.G2296 Trifolium pratense HOM05D003353 ORTHO05D003751 5.4e-10 67.8 59 57.6
HPP92_008854 Vanilla planifolia HOM05D003353 ORTHO05D003751 7.1e-10 67.4 93 41.9
CsaV3_3G042270 Cucumis sativus L. HOM05D003353 ORTHO05D003751 2.1e-09 65.9 79 48.1
SEGI_35053 Sequoiadendron giganteum HOM05D003353 ORTHO05D003751 3.5e-09 65.1 96 40.6
MELO3C009946.2 Cucumis melo HOM05D003353 ORTHO05D003751 4.6e-09 64.7 79 48.1
COL.COLO4_28936 Corchorus olitorius HOM05D003353 ORTHO05D003751 1.0e-08 63.5 101 39.6
ClCG10G014330 Citrullus lanatus HOM05D003353 ORTHO05D003751 2.5e-07 58.9 79 45.6
Sed0022584 Sechium edule HOM05D003353 ORTHO05D003751 4.3e-07 58.2 98 34.7
Atru.chr11.2012 Acer truncatum HOM05D003353 ORTHO05D003751 1.6e-06 56.2 70 40.0
Sc06g0001590 Simmondsia chinensis HOM05D003353 ORTHO05D003751 1.6e-06 56.2 53 54.7
Lj6C805G5 Lonicera japonica HOM05D003353 ORTHO05D003751 4.7e-06 54.7 64 45.3
vmacro05815 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 4.7e-06 54.7 100 40.0
Manes.15G182800 Manihot esculenta HOM05D003353 ORTHO05D003751 6.2e-06 54.3 61 44.3


User provided reference genes

Program Settings