Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 0.0e+00 1138.6 569 100.0
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 8.7e-246 853.6 575 72.3
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 1.9e-245 852.4 576 72.2
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 3.7e-244 848.2 579 72.0
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 3.2e-240 835.1 588 70.4
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 2.3e-238 828.9 575 70.6
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 2.5e-237 825.5 578 69.9
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 4.3e-237 824.7 572 70.8
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 2.0e-234 815.8 606 67.8
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 1.0e-233 813.5 571 69.7
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 1.4e-232 809.7 578 67.3
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 5.7e-229 797.7 578 66.8
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 7.4e-229 797.3 570 69.1
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 4.8e-228 794.7 572 68.5
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 1.2e-226 790.0 578 66.4
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 1.5e-226 789.6 568 69.2
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 7.7e-226 787.3 514 72.6
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 7.7e-226 787.3 578 65.9
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 1.3e-225 786.6 578 66.6
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 1.3e-225 786.6 577 66.4
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 1.7e-225 786.2 573 67.2
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 5.0e-225 784.6 576 67.0
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 8.5e-225 783.9 580 66.6
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 2.5e-224 782.3 577 65.7
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 2.5e-224 782.3 569 67.8
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 2.5e-224 782.3 577 67.1
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 7.2e-224 780.8 577 64.6
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 7.2e-224 780.8 575 67.5
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 9.4e-224 780.4 542 69.6
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 1.6e-223 779.6 581 65.4
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 4.7e-223 778.1 577 64.6
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 4.7e-223 778.1 577 64.6
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 7.9e-223 777.3 577 64.5
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 2.3e-222 775.8 577 64.5
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 2.0e-221 772.7 556 67.1
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 2.6e-221 772.3 566 65.4
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 2.6e-221 772.3 584 65.2
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 2.6e-221 772.3 571 67.3
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 7.4e-221 770.8 544 68.9
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 9.7e-221 770.4 577 64.8
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 9.7e-221 770.4 551 68.2
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 2.2e-220 769.2 578 65.9
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 2.8e-220 768.8 577 64.0
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 2.8e-220 768.8 579 65.8
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 4.8e-220 768.1 552 66.7
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 6.3e-220 767.7 567 66.0
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 6.3e-220 767.7 562 67.1
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 8.2e-220 767.3 595 62.7
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 1.8e-219 766.1 581 65.1
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 2.4e-219 765.8 573 66.1
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 1.2e-218 763.5 583 63.6
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 1.2e-218 763.5 580 65.0
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 3.5e-218 761.9 577 64.8
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 7.7e-218 760.8 569 64.5
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 6.5e-217 757.7 552 66.3
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 1.1e-216 756.9 567 65.6
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 1.5e-216 756.5 619 61.6
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 2.5e-216 755.7 540 67.0
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 5.5e-216 754.6 578 64.5
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 5.5e-216 754.6 544 65.4
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 4.7e-215 751.5 537 67.6
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 5.2e-214 748.0 577 64.0
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.2e-210 736.9 566 63.6
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 2.9e-209 732.3 626 60.7
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 2.5e-208 729.2 584 62.2
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 4.0e-206 721.8 571 61.8
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 1.2e-205 720.3 651 56.4
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 1.4e-203 713.4 576 63.0
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 3.5e-202 708.8 579 61.5
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 5.9e-202 708.0 546 63.6
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 6.5e-201 704.5 537 61.3
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 8.6e-201 704.1 463 72.8
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 3.1e-195 685.6 570 60.0
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 2.0e-194 682.9 519 65.5
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 2.3e-190 669.5 460 68.7
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 5.2e-190 668.3 462 68.2
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 8.3e-188 661.0 460 67.6
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 2.9e-180 636.0 541 61.4
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 1.1e-179 634.0 460 65.0
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 6.0e-178 628.2 610 55.9
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 3.9e-177 625.5 527 61.5
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 5.6e-176 621.7 463 66.3
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 1.6e-175 620.2 464 64.9
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 4.4e-173 612.1 429 67.6
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 7.3e-168 594.7 398 71.6
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 3.8e-164 582.4 511 58.7
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 1.1e-163 580.9 584 53.4
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 1.6e-159 567.0 351 78.3
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 5.1e-153 545.4 562 49.3
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 2.9e-148 529.6 564 46.8
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 9.6e-144 514.6 395 63.3
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 2.1e-143 513.5 530 48.3
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 4.2e-139 499.2 490 53.7
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 7.9e-138 495.0 542 47.2
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 5.1e-137 492.3 322 71.7
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 2.0e-125 453.8 355 60.6
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 5.1e-121 439.1 296 68.9
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 2.6e-117 426.8 544 44.9
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 4.5e-109 399.4 271 72.0
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 2.9e-108 396.7 267 71.9
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 5.0e-108 396.0 310 60.6
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 2.2e-100 370.5 238 73.1
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 1.5e-96 357.8 720 35.6
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 3.0e-89 333.6 545 39.6
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 2.6e-88 330.5 569 37.3
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 4.2e-83 313.2 249 60.2
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 4.0e-81 306.6 197 77.7
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 4.1e-70 270.0 455 36.5
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 7.8e-69 265.8 189 67.2
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 4.4e-64 250.0 511 34.6
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 1.3e-55 221.9 138 73.9
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.2e-53 215.3 600 27.8
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 1.1e-51 208.8 520 29.6
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 2.6e-48 197.6 122 77.0
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 4.6e-45 186.8 397 33.8
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 6.2e-42 176.4 83 100.0
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 2.1e-34 151.4 129 58.9
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 5.1e-28 130.2 97 63.9
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 9.3e-22 109.4 82 64.6
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 3.5e-21 107.5 537 23.8
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 2.3e-20 104.8 113 47.8
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 5.1e-20 103.6 117 51.3
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 7.4e-19 99.8 57 71.9
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.7e-18 97.4 110 44.5
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 4.8e-18 97.1 103 47.6
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 6.2e-18 96.7 45 100.0
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.4e-17 95.5 96 47.9
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 1.4e-17 95.5 108 54.6
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.8e-17 95.1 74 56.8
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 5.3e-17 93.6 105 45.7
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 9.0e-17 92.8 57 66.7
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 4.6e-13 80.5 55 67.3
Haze_01792 Corylus avellana HOM05D000242 ORTHO05D000700 3.1e-09 67.8 74 50.0
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 9.0e-09 66.2 38 76.3
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 9.0e-09 66.2 38 76.3
BolC8t50740H Brassica oleracea HOM05D035890 ORTHO05D033370 1.1e-06 59.3 41 63.4


User provided reference genes

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