Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14668 Nelumbo nucifera HOM05D003463 ORTHO05D004206 3.5e-64 248.1 120 100.0
Nn1g06924 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.9e-57 225.7 115 95.7
Nn7g36849 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.3e-55 219.5 115 94.8
TAR629G1280 Trochodendron aralioides HOM05D003463 ORTHO05D004206 1.3e-50 203.0 116 83.6
Nn1g03744 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.7e-50 202.6 118 81.4
Dinv10901 Davidia involucrata HOM05D003463 ORTHO05D004206 6.5e-50 200.7 116 78.4
TAR627G0487 Trochodendron aralioides HOM05D003463 ORTHO05D004206 4.2e-49 198.0 116 80.2
Ciclev10014009m.g Citrus clementina HOM05D003463 ORTHO05D004206 7.2e-49 197.2 116 78.4
Dinv18548 Davidia involucrata HOM05D003463 ORTHO05D004206 9.4e-49 196.8 116 77.6
Hma1.2p1_1378F.1_g279185 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 9.4e-49 196.8 116 78.4
Glyma.13G305000 Glycine max HOM05D003463 ORTHO05D004206 3.6e-48 194.9 115 78.3
Hma1.2p1_2477F.1_g322850 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 3.6e-48 194.9 116 77.6
GSVIVG01030649001 Vitis vinifera HOM05D003463 ORTHO05D004206 4.6e-48 194.5 116 78.4
Haze_12964 Corylus avellana HOM05D003463 ORTHO05D004206 7.9e-48 193.7 116 77.6
Glyma.12G196800 Glycine max HOM05D003463 ORTHO05D004206 7.9e-48 193.7 115 77.4
Oeu011067.1 Olea europaea HOM05D003463 ORTHO05D004206 7.9e-48 193.7 116 76.7
CSS0043747 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 1.0e-47 193.4 118 74.6
COL.COLO4_13026 Corchorus olitorius HOM05D003463 ORTHO05D004206 1.4e-47 193.0 116 78.4
CiPaw.03G164300 Carya illinoinensis HOM05D003463 ORTHO05D004206 1.8e-47 192.6 116 76.7
QL08p034245 Quercus lobata HOM05D003463 ORTHO05D004206 1.8e-47 192.6 116 75.0
CSS0039700 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 3.0e-47 191.8 118 73.7
Phvul.005G112000 Phaseolus vulgaris HOM05D003463 ORTHO05D004206 3.9e-47 191.4 111 77.5
Rhsim06G0155700 Rhododendron simsii HOM05D003463 ORTHO05D004206 3.9e-47 191.4 117 75.2
Duzib248G0717 Durio zibethinus HOM05D003463 ORTHO05D004206 5.1e-47 191.0 116 75.9
CDE11G1115 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 6.7e-47 190.7 115 75.7
CSS0001270 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 8.8e-47 190.3 118 72.9
Oeu035823.1 Olea europaea HOM05D003463 ORTHO05D004206 8.8e-47 190.3 116 75.9
Duzib052G0139 Durio zibethinus HOM05D003463 ORTHO05D004206 1.1e-46 189.9 116 76.7
Cfa014461 Carpinus fangiana HOM05D003463 ORTHO05D004206 1.5e-46 189.5 116 75.9
Ca_01564_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 1.5e-46 189.5 116 72.4
VMungo1080G1634 Vigna mungo HOM05D003463 ORTHO05D004206 1.5e-46 189.5 111 76.6
Actinidia12489 Actinidia chinensis HOM05D003463 ORTHO05D004206 2.0e-46 189.1 116 74.1
CSS0019318 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 2.0e-46 189.1 116 75.0
Lalb_Chr14g0375591 Lupinus albus HOM05D003463 ORTHO05D004206 2.0e-46 189.1 111 75.7
TPR.G30794 Trifolium pratense HOM05D003463 ORTHO05D004206 2.0e-46 189.1 116 74.1
Peaxi162Scf00007g01417 Petunia axillaris HOM05D003463 ORTHO05D004206 2.5e-46 188.7 116 75.9
vmacro12241 Vaccinium macrocarpon HOM05D003463 ORTHO05D004206 2.5e-46 188.7 117 73.5
Lj3g0003812 Lotus japonicus HOM05D003463 ORTHO05D004206 3.3e-46 188.3 116 73.3
Lj1C753T3 Lonicera japonica HOM05D003463 ORTHO05D004206 4.3e-46 188.0 116 74.1
PSO541G5151 Papaver somniferum HOM05D003463 ORTHO05D004206 5.7e-46 187.6 116 75.9
PSO675G4322 Papaver somniferum HOM05D003463 ORTHO05D004206 5.7e-46 187.6 116 75.9
Psat0s3330g0040 Pisum sativum HOM05D003463 ORTHO05D004206 9.7e-46 186.8 116 71.6
Thhalv10024183m.g Eutrema salsugineum HOM05D003463 ORTHO05D004206 1.3e-45 186.4 116 71.6
Glyma.12G102400 Glycine max HOM05D003463 ORTHO05D004206 1.3e-45 186.4 111 76.6
DCAR_021199 Daucus carota HOM05D003463 ORTHO05D004206 2.2e-45 185.7 116 73.3
Thecc.02G164300 Theobroma cacao HOM05D003463 ORTHO05D004206 2.2e-45 185.7 116 75.9
CDE05G3394 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 2.8e-45 185.3 113 74.3
Glyma.06G301900 Glycine max HOM05D003463 ORTHO05D004206 2.8e-45 185.3 111 76.6
TPR.G19054 Trifolium pratense HOM05D003463 ORTHO05D004206 3.7e-45 184.9 111 75.7
Solyc07g052940.4 Solanum lycopersicum HOM05D003463 ORTHO05D004206 4.8e-45 184.5 116 74.1
Sopen07g026490 Solanum pennellii HOM05D003463 ORTHO05D004206 4.8e-45 184.5 116 74.1
Nitab4.5_0001134g0130 Nicotiana tabacum HOM05D003463 ORTHO05D004206 1.1e-44 183.3 116 73.3
A01p22340 Brassica napus HOM05D003463 ORTHO05D004206 1.4e-44 183.0 116 69.8
BraA01t02149Z Brassica rapa HOM05D003463 ORTHO05D004206 1.4e-44 183.0 116 69.8
CiPaw.04G119100 Carya illinoinensis HOM05D003463 ORTHO05D004206 1.4e-44 183.0 116 73.3
Potri.007G119300 Populus trichocarpa HOM05D003463 ORTHO05D004206 1.4e-44 183.0 116 71.6
BcaC08g44245 Brassica carinata HOM05D003463 ORTHO05D004206 1.8e-44 182.6 116 69.8
Gohir.A03G162950 Gossypium hirsutum HOM05D003463 ORTHO05D004206 1.8e-44 182.6 116 74.1
Gohir.D02G186400 Gossypium hirsutum HOM05D003463 ORTHO05D004206 1.8e-44 182.6 116 75.0
Gorai.005G208600 Gossypium raimondii HOM05D003463 ORTHO05D004206 1.8e-44 182.6 116 75.0
TWI18G0507 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 1.8e-44 182.6 116 75.0
TWI36G1584 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 1.8e-44 182.6 116 75.9
BcaB02g07835 Brassica carinata HOM05D003463 ORTHO05D004206 4.1e-44 181.4 116 69.0
A05p17060 Brassica napus HOM05D003463 ORTHO05D004206 4.1e-44 181.4 116 69.0
C01p27890 Brassica napus HOM05D003463 ORTHO05D004206 4.1e-44 181.4 116 69.0
C06p16490 Brassica napus HOM05D003463 ORTHO05D004206 4.1e-44 181.4 116 69.0
BolC1t02722H Brassica oleracea HOM05D003463 ORTHO05D004206 4.1e-44 181.4 116 69.0
BolC6t36852H Brassica oleracea HOM05D003463 ORTHO05D004206 4.1e-44 181.4 116 69.0
BraA05t20607Z Brassica rapa HOM05D003463 ORTHO05D004206 4.1e-44 181.4 116 69.0
Lalb_Chr19g0135651 Lupinus albus HOM05D003463 ORTHO05D004206 4.1e-44 181.4 116 73.3
Eucgr.E02490 Eucalyptus grandis HOM05D003463 ORTHO05D004206 5.3e-44 181.0 111 74.8
Medtr4g045743 Medicago truncatula HOM05D003463 ORTHO05D004206 5.3e-44 181.0 111 73.9
Psat7g193080 Pisum sativum HOM05D003463 ORTHO05D004206 5.3e-44 181.0 111 73.9
Potri.017G041100 Populus trichocarpa HOM05D003463 ORTHO05D004206 6.9e-44 180.6 116 73.3
AL7G40500 Arabidopsis lyrata HOM05D003463 ORTHO05D004206 9.1e-44 180.3 116 69.0
Eucgr.A01739 Eucalyptus grandis HOM05D003463 ORTHO05D004206 9.1e-44 180.3 111 73.0
BcaC09g50202 Brassica carinata HOM05D003463 ORTHO05D004206 1.2e-43 179.9 116 69.0
Lj3g0021154 Lotus japonicus HOM05D003463 ORTHO05D004206 1.2e-43 179.9 111 73.0
Sp7g13400 Schrenkiella parvula HOM05D003463 ORTHO05D004206 1.2e-43 179.9 116 69.0
Aqoxy4G01913 Aquilegia oxysepala HOM05D003463 ORTHO05D004206 1.5e-43 179.5 116 72.4
BcaNung00300 Brassica carinata HOM05D003463 ORTHO05D004206 1.5e-43 179.5 116 69.0
CAN.G86.25 Capsicum annuum HOM05D003463 ORTHO05D004206 2.0e-43 179.1 116 71.6
CARHR221910 Cardamine hirsuta HOM05D003463 ORTHO05D004206 3.4e-43 178.3 116 68.1
Medtr2g089080 Medicago truncatula HOM05D003463 ORTHO05D004206 3.4e-43 178.3 116 71.6
Sc21g0001820 Simmondsia chinensis HOM05D003463 ORTHO05D004206 3.4e-43 178.3 116 70.7
Ca_20672_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 5.9e-43 177.6 116 71.6
FvH4_6g43760 Fragaria vesca HOM05D003463 ORTHO05D004206 5.9e-43 177.6 116 71.6
FAN02G4525 Fragaria x ananassa HOM05D003463 ORTHO05D004206 5.9e-43 177.6 116 71.6
FAN05G2372 Fragaria x ananassa HOM05D003463 ORTHO05D004206 5.9e-43 177.6 116 71.6
FAN14G1979 Fragaria x ananassa HOM05D003463 ORTHO05D004206 5.9e-43 177.6 116 71.6
Nitab4.5_0003429g0030 Nicotiana tabacum HOM05D003463 ORTHO05D004206 7.7e-43 177.2 116 71.6
Prupe.3G222600 Prunus persica HOM05D003463 ORTHO05D004206 1.0e-42 176.8 116 73.3
Atru.chr6.3118 Acer truncatum HOM05D003463 ORTHO05D004206 1.3e-42 176.4 116 70.7
AT4G15180 Arabidopsis thaliana HOM05D003463 ORTHO05D004206 1.3e-42 176.4 116 68.1
FAN09G4547 Fragaria x ananassa HOM05D003463 ORTHO05D004206 1.3e-42 176.4 116 69.8
Sabra17G0027900 Salix brachista HOM05D003463 ORTHO05D004206 1.7e-42 176.0 116 72.4
PGR042G2093 Punica granatum HOM05D003463 ORTHO05D004206 2.9e-42 175.3 116 69.8
Cc05_g05330 Coffea canephora HOM05D003463 ORTHO05D004206 3.8e-42 174.9 116 67.2
Manes.13G074400 Manihot esculenta HOM05D003463 ORTHO05D004206 3.8e-42 174.9 116 71.6
SalBow7G2865 Salvia bowleyana HOM05D003463 ORTHO05D004206 3.8e-42 174.9 116 71.6
Migut.M00384 Erythranthe guttata HOM05D003463 ORTHO05D004206 1.4e-41 172.9 116 73.3
Aa31LG8G8660 Aethionema arabicum HOM05D003463 ORTHO05D004206 1.9e-41 172.6 116 68.1
RcHm_v2.0_Chr2g0160501 Rosa chinensis HOM05D003463 ORTHO05D004206 1.9e-41 172.6 116 69.8
CANSAT64G0087 Cannabis sativa HOM05D003463 ORTHO05D004206 3.2e-41 171.8 116 69.0
THA.LOC104808502 Tarenaya hassleriana HOM05D003463 ORTHO05D004206 4.2e-41 171.4 117 68.4
Lsat_1_v5_gn_8_129901 Lactuca sativa HOM05D003463 ORTHO05D004206 9.4e-41 170.2 116 65.5
Sed0018482 Sechium edule HOM05D003463 ORTHO05D004206 9.4e-41 170.2 116 68.1
Sed0025509 Sechium edule HOM05D003463 ORTHO05D004206 9.4e-41 170.2 116 67.2
SGA_v2.0_scaffold34G13880 Striga asiatica HOM05D003463 ORTHO05D004206 2.7e-40 168.7 116 69.0
MD17G1091000 Malus domestica HOM05D003463 ORTHO05D004206 3.6e-40 168.3 116 69.0
Os08g0180100 Oryza sativa ssp. japonica HOM05D003463 ORTHO05D004206 4.7e-40 167.9 116 65.5
Hund08062 Selenicereus undatus HOM05D003463 ORTHO05D004206 6.1e-40 167.5 116 65.5
ClCG02G001610 Citrullus lanatus HOM05D003463 ORTHO05D004206 7.9e-40 167.2 116 67.2
MELO3C018791.2 Cucumis melo HOM05D003463 ORTHO05D004206 1.8e-39 166.0 116 66.4
CsaV3_7G003880 Cucumis sativus L. HOM05D003463 ORTHO05D004206 1.8e-39 166.0 116 66.4
MD09G1103200 Malus domestica HOM05D003463 ORTHO05D004206 1.8e-39 166.0 116 69.0
HanXRQChr17g0563751 Helianthus annuus HOM05D003463 ORTHO05D004206 2.3e-39 165.6 116 65.5
Ah.01g005040 Amaranthus hybridus HOM05D003463 ORTHO05D004206 3.0e-39 165.2 116 64.7
ATR0804G005 Amborella trichopoda HOM05D003463 ORTHO05D004206 6.7e-39 164.1 116 66.4
ECA233G2663 Erigeron canadensis HOM05D003463 ORTHO05D004206 2.0e-38 162.5 116 62.9
Zm00001eb413080 Zea mays HOM05D003463 ORTHO05D004206 5.7e-38 161.0 116 63.8
Zm00001eb171790 Zea mays HOM05D003463 ORTHO05D004206 1.3e-37 159.8 116 62.9
EL10Ac9g22340 Beta vulgaris HOM05D003463 ORTHO05D004206 2.8e-37 158.7 117 62.4
DCAR_009696 Daucus carota HOM05D003463 ORTHO05D004206 3.7e-37 158.3 111 67.6
unitig_8.g4614 Utricularia gibba HOM05D003463 ORTHO05D004206 5.3e-36 154.5 116 62.1
HanXRQChr04g0111771 Helianthus annuus HOM05D003463 ORTHO05D004206 1.2e-32 143.3 105 61.0
SHI10282 Sapria himalayana HOM05D003463 ORTHO05D004206 2.1e-32 142.5 111 55.9
SEGI_02831 Sequoiadendron giganteum HOM05D003463 ORTHO05D004206 8.2e-29 130.6 111 54.1
RcHm_v2.0_Chr2g0131031 Rosa chinensis HOM05D003463 ORTHO05D004206 5.3e-28 127.9 103 59.2
Pp3c11_18840 Physcomitrium patens HOM05D003463 ORTHO05D004206 3.2e-25 118.6 105 54.3
Nn2g15720 Nelumbo nucifera HOM05D003463 ORTHO05D004206 7.2e-25 117.5 58 96.6
HanXRQChr11g0343651 Helianthus annuus HOM05D001440 ORTHO05D001119 1.0e-23 113.6 80 61.2
Pp3c7_5920 Physcomitrium patens HOM05D003463 ORTHO05D004206 1.8e-23 112.8 105 51.4
Pp3c7_5929 Physcomitrium patens HOM05D003463 ORTHO05D004206 1.8e-23 112.8 105 51.4
CSS0016126 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 3.0e-23 112.1 70 68.6
Mapoly0021s0105 Marchantia polymorpha HOM05D003463 ORTHO05D004206 2.6e-22 109.0 115 47.0
Sc23g0004320 Simmondsia chinensis HOM05D000588 ORTHO05D000637 9.7e-22 107.1 86 58.1
AagrBONN_evm.TU.Sc2ySwM_117.2770 Anthoceros agrestis HOM05D003463 ORTHO05D004206 1.1e-20 103.6 116 42.2
HanXRQChr01g0020431 Helianthus annuus HOM05D002344 ORTHO05D004206 3.1e-20 102.1 79 58.2
Nn5g27118 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.6e-19 99.8 50 94.0
Nn5g27120 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.6e-19 99.8 50 94.0
HanXRQChr14g0432881 Helianthus annuus HOM05D003463 ORTHO05D004206 3.5e-19 98.6 81 56.8
CBR_g54148 Chara braunii HOM05D003463 ORTHO05D004206 2.9e-18 95.5 112 41.1
Cpa.g.sc8.254 Carica papaya HOM05D003463 ORTHO05D004206 3.6e-16 88.6 48 81.2
Actinidia27017 Actinidia chinensis HOM05D003463 ORTHO05D004206 1.1e-09 67.0 47 70.2
PRCOL_00001206 Prasinoderma coloniale HOM05D003463 ORTHO05D004206 4.2e-09 65.1 117 33.3
SMO135G0001 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 2.3e-07 59.3 64 43.8
SMO365G0046 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 2.3e-07 59.3 64 43.8


User provided reference genes

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