Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 3.5e-172 608.2 316 100.0
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 9.0e-168 593.6 316 96.5
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 6.1e-148 527.7 311 84.6
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 6.3e-145 517.7 316 80.7
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 4.5e-143 511.5 316 80.7
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 4.5e-143 511.5 314 80.6
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 6.5e-142 507.7 316 80.1
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 3.6e-140 501.9 316 78.2
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 8.0e-140 500.7 316 78.5
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 1.0e-139 500.4 316 79.1
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 1.4e-139 500.0 316 77.8
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 5.2e-139 498.0 314 76.8
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 1.2e-138 496.9 314 78.3
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 1.2e-138 496.9 316 78.2
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 1.5e-138 496.5 316 78.2
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 2.0e-138 496.1 314 79.3
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 5.7e-138 494.6 314 78.7
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 9.7e-138 493.8 316 78.2
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 2.2e-137 492.7 318 77.7
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 4.8e-137 491.5 316 77.2
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 8.3e-137 490.7 318 77.4
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 2.4e-136 489.2 316 75.9
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 3.1e-136 488.8 318 77.0
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 4.1e-136 488.4 314 76.8
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 1.2e-135 486.9 316 75.6
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 1.6e-135 486.5 313 75.7
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 1.6e-135 486.5 314 76.4
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 2.7e-135 485.7 316 76.3
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 3.5e-135 485.3 314 76.4
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 3.5e-135 485.3 312 77.2
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 4.5e-135 485.0 314 77.1
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 5.9e-135 484.6 314 77.1
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 7.7e-135 484.2 314 76.8
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 7.7e-135 484.2 314 74.2
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 1.0e-134 483.8 314 76.4
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 1.3e-134 483.4 314 74.8
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 2.2e-134 482.6 316 75.6
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 2.9e-134 482.3 316 73.4
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 6.5e-134 481.1 315 77.8
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 6.5e-134 481.1 314 74.8
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 6.5e-134 481.1 316 75.3
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 6.5e-134 481.1 315 76.8
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 8.5e-134 480.7 315 76.5
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 1.1e-133 480.3 314 74.2
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 1.5e-133 479.9 316 75.0
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 5.5e-133 478.0 314 74.5
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 5.5e-133 478.0 316 74.7
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 9.4e-133 477.2 310 74.2
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 1.2e-132 476.9 314 75.2
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 4.7e-132 474.9 299 75.6
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 8.0e-132 474.2 313 74.1
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 3.0e-131 472.2 316 74.1
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 5.2e-131 471.5 316 73.1
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 5.2e-131 471.5 343 69.4
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 5.2e-131 471.5 312 75.6
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 1.5e-130 469.9 311 74.3
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 1.5e-130 469.9 341 70.1
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 2.0e-130 469.5 312 75.6
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 2.6e-130 469.2 313 74.4
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 3.4e-130 468.8 311 74.6
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 7.5e-130 467.6 315 71.7
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 1.7e-129 466.5 316 72.2
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 2.2e-129 466.1 315 72.4
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 2.8e-129 465.7 294 77.6
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 3.7e-129 465.3 312 73.7
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 6.3e-129 464.5 293 77.1
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 6.3e-129 464.5 293 76.8
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 8.3e-129 464.2 316 71.8
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 1.8e-128 463.0 315 73.3
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 2.4e-128 462.6 313 74.8
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 2.4e-128 462.6 315 73.0
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 3.1e-128 462.2 313 71.2
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 3.1e-128 462.2 312 72.8
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 4.5e-127 458.4 314 71.7
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 5.9e-127 458.0 314 71.3
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 1.3e-126 456.8 305 74.8
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 8.6e-126 454.1 315 70.8
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 4.2e-125 451.8 311 70.4
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 7.2e-125 451.1 286 76.2
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 9.5e-125 450.7 314 71.0
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 1.2e-124 450.3 316 69.9
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 1.2e-124 450.3 316 69.9
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 1.6e-124 449.9 299 72.6
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 3.6e-124 448.7 316 69.6
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 3.6e-124 448.7 316 69.6
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 4.7e-124 448.4 316 71.2
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 4.7e-124 448.4 293 73.4
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 8.0e-124 447.6 316 69.3
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 1.0e-123 447.2 316 69.0
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 1.4e-123 446.8 329 67.2
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.4e-123 446.8 329 67.2
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.4e-123 446.8 329 67.2
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 1.4e-123 446.8 311 71.7
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 1.8e-123 446.4 308 73.7
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 3.0e-123 445.7 316 70.3
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 5.2e-123 444.9 308 73.7
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 6.8e-123 444.5 312 70.8
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 6.8e-123 444.5 312 70.2
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 8.9e-123 444.1 308 73.7
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.0e-122 443.0 329 66.3
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 2.6e-122 442.6 291 73.5
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 5.7e-122 441.4 299 71.9
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 1.3e-121 440.3 299 71.6
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 1.7e-121 439.9 299 71.2
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 1.7e-121 439.9 299 71.2
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 2.2e-121 439.5 320 68.1
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 4.9e-121 438.3 339 65.2
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 8.3e-121 437.6 329 66.3
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 8.3e-121 437.6 317 69.7
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 3.2e-120 435.6 317 67.5
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 7.0e-120 434.5 312 70.2
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 9.2e-120 434.1 314 70.1
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 1.2e-119 433.7 318 68.6
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 2.3e-118 429.5 271 76.4
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.8e-115 419.9 257 78.6
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 4.4e-114 415.2 300 68.0
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 5.0e-110 401.7 253 73.9
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 1.1e-109 400.6 329 64.4
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 6.2e-100 368.2 314 61.8
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 4.9e-97 358.6 234 76.5
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 1.1e-96 357.5 314 60.2
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 2.7e-95 352.8 316 56.6
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 3.0e-94 349.4 225 76.4
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 5.1e-94 348.6 313 56.5
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 1.1e-93 347.4 223 74.9
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 1.5e-93 347.1 299 58.2
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 5.1e-86 322.0 314 53.2
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 1.8e-83 313.5 307 52.4
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 3.1e-83 312.8 276 59.1
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 5.1e-78 295.4 275 55.6
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 9.6e-77 291.2 306 50.0
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 1.1e-69 267.7 230 63.0
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 2.5e-64 250.0 290 46.6
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 1.2e-50 204.5 293 40.3
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 1.4e-46 191.0 186 58.6
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 1.0e-41 174.9 104 78.8
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 3.6e-31 139.8 93 73.1
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 1.1e-29 134.8 94 71.3
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 9.7e-29 131.7 90 72.2
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 8.0e-23 112.1 115 55.7
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 1.0e-22 111.7 79 69.6
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 2.0e-21 107.5 90 65.6
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 2.0e-21 107.5 90 65.6
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 7.7e-18 95.5 90 61.1
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 1.5e-13 81.3 99 53.5


User provided reference genes

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