Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 3.5e-86 321.6 166 100.0
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 7.6e-41 171.0 121 72.7
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 7.9e-38 161.0 120 67.5
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.2e-32 142.9 116 67.2
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.8e-32 142.1 120 61.7
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 3.8e-32 142.1 120 61.7
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.4e-31 140.2 120 60.8
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 2.5e-31 139.4 120 60.8
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 5.5e-31 138.3 120 64.2
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 7.1e-31 137.9 121 60.3
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 2.1e-30 136.3 120 60.8
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 2.7e-30 136.0 120 62.5
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 2.7e-30 136.0 115 60.9
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 3.5e-30 135.6 116 62.1
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 3.5e-30 135.6 120 60.0
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 3.9e-29 132.1 121 60.3
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.9e-28 129.8 120 61.7
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 1.9e-28 129.8 121 57.9
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 1.9e-28 129.8 120 59.2
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 2.5e-28 129.4 120 58.3
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 4.3e-28 128.6 121 61.2
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 5.7e-28 128.3 121 58.7
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 7.4e-28 127.9 120 59.2
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 7.4e-28 127.9 120 60.8
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 7.4e-28 127.9 120 60.8
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 9.6e-28 127.5 120 60.8
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 9.6e-28 127.5 120 57.5
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.3e-27 127.1 120 60.0
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.6e-27 126.7 120 60.0
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 6.2e-27 124.8 120 55.8
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 6.2e-27 124.8 120 59.2
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 6.2e-27 124.8 121 57.0
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 6.2e-27 124.8 121 57.0
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 1.1e-26 124.0 121 58.7
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 1.1e-26 124.0 120 55.0
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.8e-26 123.2 121 57.9
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.8e-26 123.2 121 57.9
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 2.4e-26 122.9 125 57.6
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 4.0e-26 122.1 120 54.2
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 5.3e-26 121.7 120 59.2
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 5.3e-26 121.7 120 58.3
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 9.0e-26 120.9 121 52.9
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 1.2e-25 120.6 120 56.7
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 1.5e-25 120.2 120 54.2
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 2.0e-25 119.8 120 50.8
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 3.4e-25 119.0 122 59.8
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 4.5e-25 118.6 116 56.9
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 5.8e-25 118.2 122 58.2
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 5.8e-25 118.2 120 55.0
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 1.0e-24 117.5 120 57.5
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 2.2e-24 116.3 115 55.7
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 2.9e-24 115.9 114 56.1
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 6.5e-24 114.8 120 56.7
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 6.5e-24 114.8 120 52.5
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 1.1e-23 114.0 123 55.3
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 1.4e-23 113.6 120 55.8
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 1.4e-23 113.6 115 51.3
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 1.9e-23 113.2 115 56.5
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 2.5e-23 112.8 120 54.2
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 9.3e-23 110.9 120 55.0
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 9.3e-23 110.9 120 54.2
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 1.2e-22 110.5 126 52.4
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 2.1e-22 109.8 120 55.0
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.5e-22 109.0 120 54.2
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 3.5e-22 109.0 120 53.3
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 4.6e-22 108.6 120 50.0
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 6.1e-22 108.2 121 52.1
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 7.9e-22 107.8 121 53.7
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.0e-21 107.5 116 50.9
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.3e-21 107.1 158 43.7
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.3e-21 107.1 120 49.2
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 3.0e-21 105.9 121 53.7
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 3.0e-21 105.9 122 54.9
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 3.9e-21 105.5 119 54.6
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 3.9e-21 105.5 120 48.3
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 6.7e-21 104.8 118 53.4
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 6.7e-21 104.8 123 52.8
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 1.5e-20 103.6 122 50.0
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.5e-20 103.6 116 50.0
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 5.7e-20 101.7 121 52.9
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 5.7e-20 101.7 123 48.0
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 7.4e-20 101.3 116 51.7
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 9.7e-20 100.9 117 53.0
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 1.3e-19 100.5 119 46.2
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 2.8e-19 99.4 120 49.2
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 3.7e-19 99.0 120 47.5
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 1.1e-18 97.4 126 44.4
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 1.1e-18 97.4 115 47.0
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 1.1e-18 97.4 110 51.8
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.1e-18 97.4 122 48.4
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 2.4e-18 96.3 120 50.0
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 2.4e-18 96.3 113 46.9
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 4.1e-18 95.5 120 47.5
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 6.9e-18 94.7 124 50.8
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 7.7e-17 91.3 120 46.7
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 7.7e-17 91.3 116 45.7
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 2.2e-16 89.7 109 46.8
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 3.8e-16 89.0 71 64.8
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 5.0e-16 88.6 85 51.8
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 6.5e-16 88.2 70 64.3
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 5.5e-15 85.1 118 45.8
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 5.5e-15 85.1 111 45.9
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 7.9e-14 81.3 110 46.4
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 7.9e-14 81.3 120 43.3
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.8e-13 80.1 117 41.0
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 3.9e-13 79.0 122 41.8
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 8.8e-13 77.8 122 41.8
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.1e-12 77.4 60 58.3
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 7.4e-12 74.7 95 46.3
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 7.4e-12 74.7 70 52.9
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 1.3e-11 73.9 122 42.6
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 9.1e-10 67.8 60 53.3
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 9.1e-10 67.8 112 39.3
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.2e-09 67.4 88 44.3
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 1.2e-09 67.4 85 41.2
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.5e-09 67.0 114 41.2
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.7e-08 63.5 114 38.6
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 8.5e-08 61.2 68 50.0
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 5.5e-07 58.5 120 34.2


User provided reference genes

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