Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13348 Nelumbo nucifera HOM05D001139 ORTHO05D000936 3.5e-94 348.2 169 100.0
Nn2g11259 Nelumbo nucifera HOM05D001139 ORTHO05D000936 2.2e-19 99.8 117 59.8
TAR369G0871 Trochodendron aralioides HOM05D001139 ORTHO05D000936 1.1e-13 80.9 96 55.2
CSS0003058 Camellia sinensis var. sinensis HOM05D001139 ORTHO05D000936 9.2e-10 67.8 115 45.2
Migut.N00259 Erythranthe guttata HOM05D001139 ORTHO05D000936 1.0e-08 64.3 112 42.9
Aqoxy5G00254 Aquilegia oxysepala HOM05D001139 ORTHO05D000936 1.3e-08 63.9 110 45.5
PSO170G4988 Papaver somniferum HOM05D001139 ORTHO05D000936 1.3e-08 63.9 74 51.4
TAR633G1048 Trochodendron aralioides HOM05D001139 ORTHO05D000936 1.3e-08 63.9 91 49.5
TAR362G0297 Trochodendron aralioides HOM05D001139 ORTHO05D000936 1.7e-08 63.5 75 54.7
PSO210G3261 Papaver somniferum HOM05D001139 ORTHO05D000936 2.3e-08 63.2 110 46.4
MSTRG.24689 Avicennia marina HOM05D001139 ORTHO05D000936 3.0e-08 62.8 110 42.7
SalBow3G2213 Salvia bowleyana HOM05D001139 ORTHO05D000936 3.9e-08 62.4 110 40.9
Mapoly0040s0112 Marchantia polymorpha HOM05D001139 ORTHO05D000936 5.1e-08 62.0 140 37.9
TWI18G1031 Tripterygium wilfordii HOM05D001139 ORTHO05D000936 5.1e-08 62.0 75 52.0
Nitab4.5_0000342g0020 Nicotiana tabacum HOM05D001139 ORTHO05D000936 6.6e-08 61.6 122 39.3
TAR623G1782 Trochodendron aralioides HOM05D001139 ORTHO05D000936 6.6e-08 61.6 58 69.0
Atru.chr6.3130 Acer truncatum HOM05D001139 ORTHO05D000936 8.6e-08 61.2 74 55.4
ATR0680G338 Amborella trichopoda HOM05D001139 ORTHO05D000936 8.6e-08 61.2 75 56.0
SGA_v2.0_scaffold308G48089 Striga asiatica HOM05D001139 ORTHO05D000936 8.6e-08 61.2 110 40.9
Actinidia04455 Actinidia chinensis HOM05D001139 ORTHO05D000936 1.1e-07 60.8 75 54.7
Nitab4.5_0003897g0030 Nicotiana tabacum HOM05D001139 ORTHO05D000936 1.1e-07 60.8 122 36.9
MSTRG.9903 Avicennia marina HOM05D001139 ORTHO05D000936 1.5e-07 60.5 112 42.0
CDE04G1631 Ceratophyllum demersum HOM05D001139 ORTHO05D000936 1.5e-07 60.5 103 42.7
MD11G1227800 Malus domestica HOM05D001139 ORTHO05D000936 1.5e-07 60.5 75 54.7
Cpa.g.sc44.78 Carica papaya HOM05D001139 ORTHO05D000936 1.9e-07 60.1 75 52.0
Actinidia09958 Actinidia chinensis HOM05D001139 ORTHO05D000936 2.5e-07 59.7 75 54.7
MD16G1216000 Malus domestica HOM05D001139 ORTHO05D000936 2.5e-07 59.7 96 44.8
Prupe.4G201500 Prunus persica HOM05D001139 ORTHO05D000936 2.5e-07 59.7 74 55.4
TWI73G1160 Tripterygium wilfordii HOM05D001139 ORTHO05D000936 2.5e-07 59.7 110 44.5
Cc03_g05370 Coffea canephora HOM05D001139 ORTHO05D000936 3.3e-07 59.3 73 49.3
Glyma.12G136300 Glycine max HOM05D001139 ORTHO05D000936 3.3e-07 59.3 75 53.3
Oeu011993.1 Olea europaea HOM05D001139 ORTHO05D000936 3.3e-07 59.3 105 40.0
Actinidia40062 Actinidia chinensis HOM05D001139 ORTHO05D000936 4.3e-07 58.9 96 44.8
Ca_01758_v3 Cicer arietinum L. HOM05D001139 ORTHO05D000936 4.3e-07 58.9 75 53.3
Ca_01764_v3 Cicer arietinum L. HOM05D001139 ORTHO05D000936 4.3e-07 58.9 75 53.3
MD03G1212600 Malus domestica HOM05D001139 ORTHO05D000936 4.3e-07 58.9 75 53.3
Ca_11965_v3 Cicer arietinum L. HOM05D001139 ORTHO05D000936 5.6e-07 58.5 116 39.7
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 5.6e-07 58.5 75 53.3
Nn3g19623 Nelumbo nucifera HOM05D001139 ORTHO05D000936 5.6e-07 58.5 73 53.4
PSO832G2163 Papaver somniferum HOM05D001139 ORTHO05D000936 5.6e-07 58.5 110 44.5
Actinidia05126 Actinidia chinensis HOM05D001139 ORTHO05D000936 7.3e-07 58.2 75 52.0
HPP92_026547 Vanilla planifolia HOM05D001139 ORTHO05D000936 7.3e-07 58.2 62 59.7
MSTRG.4125 Avicennia marina HOM05D001139 ORTHO05D000936 9.5e-07 57.8 96 41.7
Medtr4g081370 Medicago truncatula HOM05D001139 ORTHO05D000936 9.5e-07 57.8 75 52.0
Actinidia35313 Actinidia chinensis HOM05D001139 ORTHO05D000936 1.2e-06 57.4 75 52.0
CAN.G793.34 Capsicum annuum HOM05D001139 ORTHO05D000936 1.2e-06 57.4 75 46.7
Ciclev10016381m.g Citrus clementina HOM05D001139 ORTHO05D000936 1.6e-06 57.0 72 52.8
Ciclev10016511m.g Citrus clementina HOM05D001139 ORTHO05D000936 1.6e-06 57.0 75 52.0
HPP92_002203 Vanilla planifolia HOM05D001139 ORTHO05D000936 1.6e-06 57.0 62 58.1
Atru.chr10.2107 Acer truncatum HOM05D001139 ORTHO05D000936 2.1e-06 56.6 75 50.7
Atru.chr2.3184 Acer truncatum HOM05D001139 ORTHO05D000936 2.1e-06 56.6 75 52.0
Atru.chr2.3194 Acer truncatum HOM05D001139 ORTHO05D000936 2.1e-06 56.6 75 52.0
AL7G41760 Arabidopsis lyrata HOM05D001139 ORTHO05D000936 2.1e-06 56.6 96 43.8
AL7G41790 Arabidopsis lyrata HOM05D001139 ORTHO05D000936 2.1e-06 56.6 96 43.8
arahy.Tifrunner.gnm1.ann1.ZSV3DU Arachis hypogaea HOM05D001139 ORTHO05D000936 2.1e-06 56.6 75 53.3
CiPaw.09G080700 Carya illinoinensis HOM05D001139 ORTHO05D000936 2.1e-06 56.6 58 63.8
ClCG05G014800 Citrullus lanatus HOM05D001139 ORTHO05D000936 2.1e-06 56.6 73 52.1
CsaV3_UNG229040 Cucumis sativus L. HOM05D001139 ORTHO05D000936 2.1e-06 56.6 73 52.1
Lsat_1_v5_gn_6_92040 Lactuca sativa HOM05D001139 ORTHO05D000936 2.1e-06 56.6 75 48.0
Zm00001eb171220 Zea mays HOM05D001139 ORTHO05D000936 2.1e-06 56.6 67 55.2
Zm00001eb289490 Zea mays HOM05D001139 ORTHO05D000936 2.1e-06 56.6 61 60.7
Gohir.A01G074000 Gossypium hirsutum HOM05D001139 ORTHO05D000936 2.8e-06 56.2 75 52.0
Medtr2g082640 Medicago truncatula HOM05D001139 ORTHO05D000936 2.8e-06 56.2 75 52.0
TPR.G25926 Trifolium pratense HOM05D001139 ORTHO05D000936 2.8e-06 56.2 75 52.0
unitig_748.g8312 Utricularia gibba HOM05D001139 ORTHO05D000936 2.8e-06 56.2 75 48.0
Zm00001eb386850 Zea mays HOM05D001139 ORTHO05D000936 2.8e-06 56.2 67 55.2
Zm00001eb416800 Zea mays HOM05D001139 ORTHO05D000936 2.8e-06 56.2 69 52.2
Migut.H01862 Erythranthe guttata HOM05D001139 ORTHO05D000936 3.6e-06 55.8 75 52.0
Nn1g03709 Nelumbo nucifera HOM05D001139 ORTHO05D000936 3.6e-06 55.8 64 57.8
Pp3c4_16270 Physcomitrium patens HOM05D001139 ORTHO05D000936 3.6e-06 55.8 69 53.6
Zm00001eb383710 Zea mays HOM05D001139 ORTHO05D000936 3.6e-06 55.8 72 50.0
AL3G37860 Arabidopsis lyrata HOM05D001139 ORTHO05D000936 4.7e-06 55.5 75 49.3
COL.COLO4_09558 Corchorus olitorius HOM05D001139 ORTHO05D000936 4.7e-06 55.5 75 50.7
Sed0024068 Sechium edule HOM05D001139 ORTHO05D000936 4.7e-06 55.5 69 52.2
SGA_v2.0_scaffold67G22772 Striga asiatica HOM05D001139 ORTHO05D000936 4.7e-06 55.5 118 37.3
Zm00001eb006060 Zea mays HOM05D001139 ORTHO05D000936 4.7e-06 55.5 72 50.0
DCAR_008114 Daucus carota HOM05D001139 ORTHO05D000936 6.2e-06 55.1 65 55.4
Dinv27037 Davidia involucrata HOM05D001139 ORTHO05D000936 6.2e-06 55.1 74 48.6
Gorai.002G016500 Gossypium raimondii HOM05D001139 ORTHO05D000936 6.2e-06 55.1 63 55.6
Os07g0543000 Oryza sativa ssp. japonica HOM05D001139 ORTHO05D000936 6.2e-06 55.1 75 50.7
Pp3c12_4630 Physcomitrium patens HOM05D001139 ORTHO05D000936 6.2e-06 55.1 70 51.4
Pp3c5_28980 Physcomitrium patens HOM05D001139 ORTHO05D000936 6.2e-06 55.1 70 52.9
Psat7g122200 Pisum sativum HOM05D001139 ORTHO05D000936 6.2e-06 55.1 127 36.2
unitig_32.g10837 Utricularia gibba HOM05D001139 ORTHO05D000936 6.2e-06 55.1 75 48.0
ATR1088G025 Amborella trichopoda HOM05D001139 ORTHO05D000936 8.1e-06 54.7 62 58.1
ECA240G2654 Erigeron canadensis HOM05D001139 ORTHO05D000936 8.1e-06 54.7 75 48.0
MBI18_g15335_MAGBIO Magnolia biondii HOM05D001139 ORTHO05D000936 8.1e-06 54.7 65 50.8


User provided reference genes

Program Settings