Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13327 Nelumbo nucifera HOM05D003034 ORTHO05D029951 1.4e-26 122.1 59 100.0
Nn2g11616 Nelumbo nucifera HOM05D003034 ORTHO05D003815 3.4e-20 100.9 58 87.9
Actinidia32658 Actinidia chinensis HOM05D003034 ORTHO05D003815 1.0e-19 99.4 58 87.9
MSTRG.27345 Avicennia marina HOM05D003034 ORTHO05D003815 1.0e-19 99.4 58 87.9
CSS0003359 Camellia sinensis var. sinensis HOM05D003034 ORTHO05D003815 1.0e-19 99.4 58 87.9
CSS0030998 Camellia sinensis var. sinensis HOM05D003034 ORTHO05D003815 1.0e-19 99.4 58 87.9
Cc06_g10290 Coffea canephora HOM05D003034 ORTHO05D003815 1.0e-19 99.4 58 87.9
Dinv36700 Davidia involucrata HOM05D003034 ORTHO05D003815 1.0e-19 99.4 58 87.9
MBI01_g18395_MAGBIO Magnolia biondii HOM05D003034 ORTHO05D003815 1.0e-19 99.4 58 87.9
SGA_v2.0_scaffold2G00918 Striga asiatica HOM05D003034 ORTHO05D003815 1.0e-19 99.4 58 87.9
Dinv41659 Davidia involucrata HOM05D003034 ORTHO05D003815 1.7e-19 98.6 57 84.2
Hma1.2p1_0155F.1_g068240 Hydrangea macrophylla HOM05D003034 ORTHO05D003815 2.2e-19 98.2 58 86.2
Nn6g34053 Nelumbo nucifera HOM05D003034 ORTHO05D003815 2.2e-19 98.2 58 86.2
GSVIVG01015321001 Vitis vinifera HOM05D003034 ORTHO05D003815 2.2e-19 98.2 58 86.2
Peaxi162Scf00463g00215 Petunia axillaris HOM05D003034 ORTHO05D003815 2.9e-19 97.8 58 86.2
TAR383G0759 Trochodendron aralioides HOM05D003034 ORTHO05D003815 2.9e-19 97.8 58 86.2
TAR626G0953 Trochodendron aralioides HOM05D003034 ORTHO05D003815 2.9e-19 97.8 58 86.2
Eucgr.C03783 Eucalyptus grandis HOM05D003034 ORTHO05D003815 5.0e-19 97.1 58 86.2
Nitab4.5_0000571g0140 Nicotiana tabacum HOM05D003034 ORTHO05D003815 5.0e-19 97.1 58 84.5
Nitab4.5_0001004g0210 Nicotiana tabacum HOM05D003034 ORTHO05D003815 5.0e-19 97.1 58 84.5
Nitab4.5_0001364g0040 Nicotiana tabacum HOM05D003034 ORTHO05D003815 5.0e-19 97.1 58 84.5
Nitab4.5_0001886g0070 Nicotiana tabacum HOM05D003034 ORTHO05D003815 5.0e-19 97.1 58 84.5
Oeu013765.3 Olea europaea HOM05D003034 ORTHO05D003815 5.0e-19 97.1 58 84.5
SalBow6G1785 Salvia bowleyana HOM05D003034 ORTHO05D003815 5.0e-19 97.1 58 86.2
CANSAT56G3645 Cannabis sativa HOM05D003034 ORTHO05D003815 6.5e-19 96.7 58 84.5
Migut.F00702 Erythranthe guttata HOM05D003034 ORTHO05D003815 6.5e-19 96.7 58 84.5
unitig_748.g6993 Utricularia gibba HOM05D003034 ORTHO05D003815 6.5e-19 96.7 58 84.5
Cpa.g.sc80.4 Carica papaya HOM05D003034 ORTHO05D003815 1.1e-18 95.9 58 84.5
CDE04G2309 Ceratophyllum demersum HOM05D003034 ORTHO05D003815 1.1e-18 95.9 58 82.8
Duzib150G0860 Durio zibethinus HOM05D003034 ORTHO05D003815 1.1e-18 95.9 58 84.5
Duzib187G0042 Durio zibethinus HOM05D003034 ORTHO05D003815 1.1e-18 95.9 58 84.5
Gohir.A06G066400 Gossypium hirsutum HOM05D003034 ORTHO05D003815 1.1e-18 95.9 58 84.5
Gohir.D06G064900 Gossypium hirsutum HOM05D003034 ORTHO05D003815 1.1e-18 95.9 58 84.5
Gorai.010G076000 Gossypium raimondii HOM05D003034 ORTHO05D003815 1.1e-18 95.9 58 84.5
Manes.03G025400 Manihot esculenta HOM05D003034 ORTHO05D003815 1.1e-18 95.9 58 84.5
Potri.006G163700 Populus trichocarpa HOM05D003034 ORTHO05D003815 1.1e-18 95.9 58 84.5
Potri.018G086100 Populus trichocarpa HOM05D003034 ORTHO05D003815 1.1e-18 95.9 58 84.5
Sabra18G0074400 Salix brachista HOM05D003034 ORTHO05D003815 1.1e-18 95.9 58 84.5
Ah.13g075360 Amaranthus hybridus HOM05D003034 ORTHO05D003815 1.4e-18 95.5 49 93.9
EL10Ac8g18404 Beta vulgaris HOM05D003034 ORTHO05D003815 1.4e-18 95.5 49 93.9
PGR102G1252 Punica granatum HOM05D003034 ORTHO05D003815 1.4e-18 95.5 58 84.5
Lj7P662T23 Lonicera japonica HOM05D003034 ORTHO05D003815 1.9e-18 95.1 49 93.9
HPP92_020241 Vanilla planifolia HOM05D003034 ORTHO05D003815 1.9e-18 95.1 58 82.8
Sc18g0001400 Simmondsia chinensis HOM05D003034 ORTHO05D003815 2.5e-18 94.7 49 91.8
COL.COLO4_34776 Corchorus olitorius HOM05D003034 ORTHO05D003815 3.2e-18 94.4 58 82.8
HanXRQChr12g0355101 Helianthus annuus HOM05D003034 ORTHO05D003815 3.2e-18 94.4 49 93.9
Manes.16G110600 Manihot esculenta HOM05D003034 ORTHO05D003815 3.2e-18 94.4 58 82.8
MELO3C004580.2 Cucumis melo HOM05D003034 ORTHO05D003815 4.2e-18 94.0 58 84.5
Sed0020635 Sechium edule HOM05D003034 ORTHO05D003815 4.2e-18 94.0 58 84.5
Thecc.09G102800 Theobroma cacao HOM05D003034 ORTHO05D003815 4.2e-18 94.0 58 82.8
ATR0767G058 Amborella trichopoda HOM05D003034 ORTHO05D003815 5.5e-18 93.6 58 81.0
CAN.G1349.3 Capsicum annuum HOM05D003034 ORTHO05D003815 5.5e-18 93.6 49 89.8
CAN.G2308.2 Capsicum annuum HOM05D003034 ORTHO05D003815 5.5e-18 93.6 49 89.8
ClCG11G002250 Citrullus lanatus HOM05D003034 ORTHO05D003815 5.5e-18 93.6 49 93.9
MELO3C003973.2 Cucumis melo HOM05D003034 ORTHO05D003815 5.5e-18 93.6 49 93.9
CsaV3_2G008750 Cucumis sativus L. HOM05D003034 ORTHO05D003815 5.5e-18 93.6 49 93.9
Prupe.6G190500 Prunus persica HOM05D003034 ORTHO05D003815 5.5e-18 93.6 49 91.8
Sopen12g003330 Solanum pennellii HOM05D003034 ORTHO05D003815 5.5e-18 93.6 49 89.8
PGSC0003DMG400000364 Solanum tuberosum HOM05D003034 ORTHO05D003815 5.5e-18 93.6 49 89.8
THA.LOC104814568 Tarenaya hassleriana HOM05D003034 ORTHO05D003815 5.5e-18 93.6 58 81.0
arahy.Tifrunner.gnm1.ann1.FQ27XI Arachis hypogaea HOM05D003034 ORTHO05D003815 7.2e-18 93.2 58 79.3
arahy.Tifrunner.gnm1.ann1.H9HV5G Arachis hypogaea HOM05D003034 ORTHO05D003815 7.2e-18 93.2 58 79.3
arahy.Tifrunner.gnm1.ann1.Q11F98 Arachis hypogaea HOM05D003034 ORTHO05D003815 7.2e-18 93.2 58 79.3
arahy.Tifrunner.gnm1.ann1.SJ5F17 Arachis hypogaea HOM05D003034 ORTHO05D003815 7.2e-18 93.2 58 79.3
ECA247G1716 Erigeron canadensis HOM05D003034 ORTHO05D003815 7.2e-18 93.2 49 91.8
Lj3g0024359 Lotus japonicus HOM05D003034 ORTHO05D003815 7.2e-18 93.2 58 79.3
Lalb_Chr14g0364221 Lupinus albus HOM05D003034 ORTHO05D003815 7.2e-18 93.2 58 79.3
Lalb_Chr14g0371801 Lupinus albus HOM05D003034 ORTHO05D003815 7.2e-18 93.2 58 79.3
Phvul.004G176500 Phaseolus vulgaris HOM05D003034 ORTHO05D003815 7.2e-18 93.2 58 79.3
QL07p045689 Quercus lobata HOM05D003034 ORTHO05D003815 7.2e-18 93.2 58 81.0
VMungo0464G1299 Vigna mungo HOM05D003034 ORTHO05D003815 7.2e-18 93.2 58 79.3
Aqoxy5G03604 Aquilegia oxysepala HOM05D003034 ORTHO05D003815 9.4e-18 92.8 58 81.0
CDE02G1105 Ceratophyllum demersum HOM05D003034 ORTHO05D003815 9.4e-18 92.8 58 81.0
CsaV3_2G002010 Cucumis sativus L. HOM05D003034 ORTHO05D003815 9.4e-18 92.8 58 82.8
Aa31LG4G7190 Aethionema arabicum HOM05D003034 ORTHO05D003815 1.2e-17 92.4 58 79.3
Ciclev10011323m.g Citrus clementina HOM05D003034 ORTHO05D003815 1.2e-17 92.4 49 87.8
ECA234G3488 Erigeron canadensis HOM05D003034 ORTHO05D003815 1.2e-17 92.4 49 91.8
FvH4_1g05870 Fragaria vesca HOM05D003034 ORTHO05D003815 1.2e-17 92.4 49 91.8
FAN19G3151 Fragaria x ananassa HOM05D003034 ORTHO05D003815 1.2e-17 92.4 49 91.8
FAN23G2752 Fragaria x ananassa HOM05D003034 ORTHO05D003815 1.2e-17 92.4 49 91.8
FAN26G1867 Fragaria x ananassa HOM05D003034 ORTHO05D003815 1.2e-17 92.4 49 91.8
FAN26G3466 Fragaria x ananassa HOM05D003034 ORTHO05D003815 1.2e-17 92.4 49 91.8
FAN28G1237 Fragaria x ananassa HOM05D003034 ORTHO05D003815 1.2e-17 92.4 49 91.8
Lj3g0026495 Lotus japonicus HOM05D003034 ORTHO05D003815 1.2e-17 92.4 58 81.0
RcHm_v2.0_Chr2g0091531 Rosa chinensis HOM05D003034 ORTHO05D003815 1.2e-17 92.4 49 91.8
RcHm_v2.0_Chr2g0091611 Rosa chinensis HOM05D003034 ORTHO05D003815 1.2e-17 92.4 49 91.8
CARHR070650 Cardamine hirsuta HOM05D003034 ORTHO05D003815 1.6e-17 92.0 58 79.3
Lsat_1_v5_gn_8_96740 Lactuca sativa HOM05D003034 ORTHO05D003815 1.6e-17 92.0 49 89.8
Lsat_1_v5_gn_8_96801 Lactuca sativa HOM05D003034 ORTHO05D003815 1.6e-17 92.0 49 89.8
Sp5g32360 Schrenkiella parvula HOM05D003034 ORTHO05D003815 1.6e-17 92.0 58 79.3
Atru.chr3.2837 Acer truncatum HOM05D003034 ORTHO05D003815 2.1e-17 91.7 58 79.3
Atru.chr7.1439 Acer truncatum HOM05D003034 ORTHO05D003815 2.1e-17 91.7 58 79.3
A07p42740 Brassica napus HOM05D003034 ORTHO05D003815 2.1e-17 91.7 58 79.3
C06p51340 Brassica napus HOM05D003034 ORTHO05D003815 2.1e-17 91.7 58 79.3
BraA07t31796Z Brassica rapa HOM05D003034 ORTHO05D003815 2.1e-17 91.7 58 79.3
AUR62010919 Chenopodium quinoa HOM05D003034 ORTHO05D003815 2.1e-17 91.7 49 89.8
AUR62029022 Chenopodium quinoa HOM05D003034 ORTHO05D003815 2.1e-17 91.7 49 89.8
AUR62039009 Chenopodium quinoa HOM05D003034 ORTHO05D003815 2.1e-17 91.7 49 89.8
ClCG11G011740 Citrullus lanatus HOM05D003034 ORTHO05D003815 2.1e-17 91.7 49 91.8
TWI63G1404 Tripterygium wilfordii HOM05D003034 ORTHO05D003815 2.1e-17 91.7 58 79.3
ATR0705G182 Amborella trichopoda HOM05D003034 ORTHO05D003815 2.7e-17 91.3 58 79.3
BcaC08g47218 Brassica carinata HOM05D003034 ORTHO05D003815 2.7e-17 91.3 58 79.3
BcaNung04773 Brassica carinata HOM05D003034 ORTHO05D003815 2.7e-17 91.3 58 77.6
Ca_00851_v3 Cicer arietinum L. HOM05D003034 ORTHO05D003815 2.7e-17 91.3 58 79.3
Glyma.01G008600 Glycine max HOM05D003034 ORTHO05D003815 3.6e-17 90.9 58 77.6
BolC6t40155H Brassica oleracea HOM05D003034 ORTHO05D003815 4.6e-17 90.5 58 79.3
Ca_11222_v3 Cicer arietinum L. HOM05D003034 ORTHO05D003815 6.1e-17 90.1 58 75.9
Medtr2g030450 Medicago truncatula HOM05D003034 ORTHO05D003815 6.1e-17 90.1 58 75.9
Thhalv10018295m.g Eutrema salsugineum HOM05D003034 ORTHO05D003815 7.9e-17 89.7 58 77.6
CiPaw.03G226500 Carya illinoinensis HOM05D003034 ORTHO05D003815 1.4e-16 89.0 58 77.6
CiPaw.05G159100 Carya illinoinensis HOM05D003034 ORTHO05D003815 1.4e-16 89.0 58 77.6
Glyma.16G077700 Glycine max HOM05D003034 ORTHO05D003815 1.4e-16 89.0 58 75.9
Peaxi162Scf00665g00023 Petunia axillaris HOM05D003034 ORTHO05D003815 1.4e-16 89.0 58 75.9
Psat6g027040 Pisum sativum HOM05D003034 ORTHO05D003815 1.4e-16 89.0 58 74.1
Cfa003200 Carpinus fangiana HOM05D003034 ORTHO05D003815 1.8e-16 88.6 58 75.9
Haze_25807 Corylus avellana HOM05D003034 ORTHO05D003815 1.8e-16 88.6 58 75.9
Hma1.2p1_1809F.1_g303480 Hydrangea macrophylla HOM05D003034 ORTHO05D029951 1.8e-16 88.6 49 87.8
Zm00001eb193840 Zea mays HOM05D003034 ORTHO05D003815 1.8e-16 88.6 49 87.8
Carub.0006s0828 Capsella rubella HOM05D003034 ORTHO05D003815 3.0e-16 87.8 58 77.6
AUR62021432 Chenopodium quinoa HOM05D003034 ORTHO05D003815 3.0e-16 87.8 49 83.7
DCAR_028668 Daucus carota HOM05D003034 ORTHO05D003815 3.0e-16 87.8 49 87.8
AL2G37350 Arabidopsis lyrata HOM05D003034 ORTHO05D003815 5.1e-16 87.0 58 74.1
AT1G77180 Arabidopsis thaliana HOM05D003034 ORTHO05D003815 6.7e-16 86.7 49 81.6
Carub.0002s2406 Capsella rubella HOM05D003034 ORTHO05D003815 6.7e-16 86.7 58 75.9
Os02g0759800 Oryza sativa ssp. japonica HOM05D003034 ORTHO05D003815 8.8e-16 86.3 49 85.7
TPR.G14199 Trifolium pratense HOM05D003034 ORTHO05D003815 1.9e-15 85.1 49 77.6
MD15G1194300 Malus domestica HOM05D003034 ORTHO05D003815 2.5e-15 84.7 49 81.6
Solyc12g008370.3 Solanum lycopersicum HOM05D003034 ORTHO05D003815 3.3e-15 84.3 43 90.7
Peaxi162Scf00038g01448 Petunia axillaris HOM05D003034 ORTHO05D306433 7.4e-15 83.2 49 85.7
Hma1.2p1_1940F.1_g308320 Hydrangea macrophylla HOM05D003034 ORTHO05D029951 9.7e-15 82.8 48 85.4
CANSAT56G0252 Cannabis sativa HOM05D003034 ORTHO05D003815 1.3e-14 82.4 59 76.3
MD02G1060700 Malus domestica HOM05D003034 ORTHO05D003815 1.7e-14 82.0 49 79.6
AagrBONN_evm.TU.Sc2ySwM_344.799 Anthoceros agrestis HOM05D003034 ORTHO05D003815 2.2e-14 81.6 58 69.0
Mapoly0133s0002 Marchantia polymorpha HOM05D003034 ORTHO05D003815 2.2e-14 81.6 58 70.7
Pp3c12_6510 Physcomitrium patens HOM05D003034 ORTHO05D003815 2.2e-14 81.6 58 70.7
ECA234G3735 Erigeron canadensis HOM05D003034 ORTHO05D003815 2.8e-14 81.3 49 85.7
Nitab4.5_0004962g0020 Nicotiana tabacum HOM05D003034 ORTHO05D003815 2.8e-14 81.3 49 77.6
MD02G1060800 Malus domestica HOM05D003034 ORTHO05D003815 3.7e-14 80.9 49 79.6
SHI17238 Sapria himalayana HOM05D003034 ORTHO05D003815 3.7e-14 80.9 59 74.6
SEGI_22940 Sequoiadendron giganteum HOM05D003034 ORTHO05D003815 4.8e-14 80.5 58 72.4
RcHm_v2.0_Chr4g0445081 Rosa chinensis HOM05D003034 ORTHO05D003815 6.3e-14 80.1 48 77.1
MD02G1060600 Malus domestica HOM05D003034 ORTHO05D003815 1.4e-13 79.0 49 73.5
PSO541G1919 Papaver somniferum HOM05D003034 ORTHO05D003815 2.4e-13 78.2 58 69.0
PSO675G1466 Papaver somniferum HOM05D003034 ORTHO05D003815 2.4e-13 78.2 58 69.0
CBR_g39572 Chara braunii HOM05D003034 ORTHO05D000048 2.0e-12 75.1 49 75.5
Prupe.7G222200 Prunus persica HOM05D003034 ORTHO05D003815 2.0e-12 75.1 49 73.5
HanXRQChr06g0165831 Helianthus annuus HOM05D003034 ORTHO05D003815 4.5e-12 73.9 47 76.6
PSO333G0001 Papaver somniferum HOM05D003034 ORTHO05D003815 4.5e-12 73.9 44 77.3
QL01p011562 Quercus lobata HOM05D003034 ORTHO05D029951 6.5e-11 70.1 49 73.5
DCAR_019351 Daucus carota HOM05D003034 ORTHO05D003815 3.2e-10 67.8 46 76.1
QL06p036908 Quercus lobata HOM05D003034 ORTHO05D003815 4.2e-10 67.4 48 72.9
Thecc.04G177800 Theobroma cacao HOM05D003034 ORTHO05D003815 5.5e-10 67.0 60 66.7
Thhalv10009601m.g Eutrema salsugineum HOM05D003034 ORTHO05D003815 9.4e-10 66.2 47 72.3
Rhsim03G0075400 Rhododendron simsii HOM05D003034 ORTHO05D003815 1.6e-09 65.5 47 72.3
CARHR019020 Cardamine hirsuta HOM05D003034 ORTHO05D003815 2.1e-09 65.1 50 66.0
AL1G30830 Arabidopsis lyrata HOM05D003034 ORTHO05D003815 2.7e-09 64.7 50 64.0
Os06g0218000 Oryza sativa ssp. japonica HOM05D003034 ORTHO05D003815 2.7e-09 64.7 43 69.8
C02p34310 Brassica napus HOM05D003034 ORTHO05D003815 6.1e-09 63.5 49 69.4
BolC2t09453H Brassica oleracea HOM05D003034 ORTHO05D003815 6.1e-09 63.5 49 69.4
SMO358G0498 Selaginella moellendorffii HOM05D003034 ORTHO05D003815 7.9e-09 63.2 34 85.3
PSO333G0016 Papaver somniferum HOM05D003034 ORTHO05D003815 1.4e-08 62.4 49 57.1
PSO339G3427 Papaver somniferum HOM05D003034 ORTHO05D003815 1.8e-08 62.0 49 57.1
SMO271G0070 Selaginella moellendorffii HOM05D003034 ORTHO05D003815 1.8e-08 62.0 50 64.0
FAN07G1834 Fragaria x ananassa HOM05D003034 ORTHO05D003815 8.8e-08 59.7 39 71.8
Carub.0001s1804 Capsella rubella HOM05D003034 ORTHO05D003815 1.1e-07 59.3 44 68.2
Cre01.g051100 Chlamydomonas reinhardtii HOM05D003034 ORTHO05D003815 1.5e-07 58.9 53 54.7
QL12p007741 Quercus lobata HOM05D003034 ORTHO05D003815 3.3e-07 57.8 45 66.7
A02p21160 Brassica napus HOM05D003034 ORTHO05D003815 4.4e-07 57.4 58 55.2
BraA02t07133Z Brassica rapa HOM05D003034 ORTHO05D003815 4.4e-07 57.4 58 55.2
BcaB05g25024 Brassica carinata HOM05D003034 ORTHO05D003815 5.7e-07 57.0 45 64.4
COL.COLO4_34758 Corchorus olitorius HOM05D003034 ORTHO05D003815 3.7e-06 54.3 54 59.3


User provided reference genes

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