Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 4.2e-107 391.3 197 100.0
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 9.9e-80 300.4 201 76.1
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 8.4e-71 270.8 201 71.1
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 3.0e-68 262.3 202 70.3
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 1.6e-66 256.5 213 67.1
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 4.8e-66 255.0 207 66.7
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 1.8e-65 253.1 205 68.3
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 2.4e-65 252.7 197 66.5
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 4.0e-65 251.9 199 66.3
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 9.0e-65 250.8 199 66.3
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 1.5e-64 250.0 203 65.5
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 1.5e-64 250.0 197 67.0
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 2.0e-64 249.6 205 66.8
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.0e-64 249.6 198 65.7
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 2.0e-64 249.6 211 64.9
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 2.6e-64 249.2 198 65.7
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 3.4e-64 248.8 216 65.3
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 4.4e-64 248.4 209 65.6
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 1.3e-63 246.9 210 63.8
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 1.7e-63 246.5 197 65.5
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 2.2e-63 246.1 200 66.0
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 2.9e-63 245.7 198 65.2
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 3.8e-63 245.4 176 72.2
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 4.9e-63 245.0 201 67.7
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 6.4e-63 244.6 204 63.7
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 6.4e-63 244.6 197 65.5
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 8.4e-63 244.2 201 66.7
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 8.4e-63 244.2 204 66.7
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.4e-62 243.4 195 64.6
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 1.4e-62 243.4 197 65.5
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 1.4e-62 243.4 209 65.1
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 2.4e-62 242.7 204 66.2
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 3.2e-62 242.3 206 64.6
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 7.1e-62 241.1 218 61.5
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 7.1e-62 241.1 220 60.9
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 1.6e-61 240.0 201 65.7
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 3.5e-61 238.8 192 64.6
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 4.6e-61 238.4 204 66.7
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 2.3e-60 236.1 197 65.0
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 3.9e-60 235.3 212 62.3
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 1.1e-59 233.8 181 68.5
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 1.1e-59 233.8 201 63.7
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 1.1e-59 233.8 203 63.1
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 3.3e-59 232.3 213 62.4
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 4.3e-59 231.9 212 61.8
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 4.3e-59 231.9 202 62.4
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 5.6e-59 231.5 200 64.5
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 7.3e-59 231.1 206 64.1
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 7.3e-59 231.1 203 61.1
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 7.3e-59 231.1 207 61.8
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 9.6e-59 230.7 196 64.8
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 9.6e-59 230.7 205 62.9
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 2.1e-58 229.6 201 63.7
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 2.1e-58 229.6 206 62.6
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 3.6e-58 228.8 199 63.8
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 3.6e-58 228.8 186 65.6
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 3.6e-58 228.8 212 60.4
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 4.8e-58 228.4 198 61.6
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 4.8e-58 228.4 194 63.4
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 6.2e-58 228.0 207 61.8
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 2.4e-57 226.1 197 64.0
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 3.1e-57 225.7 192 63.5
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 4.0e-57 225.3 117 89.7
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 1.2e-56 223.8 199 62.8
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 3.4e-56 222.2 120 85.8
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 9.9e-56 220.7 196 62.2
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.3e-55 220.3 156 71.2
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 2.9e-55 219.2 147 73.5
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 3.8e-55 218.8 198 60.6
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 6.4e-55 218.0 188 61.2
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 6.4e-55 218.0 149 72.5
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 8.4e-55 217.6 200 59.5
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 1.9e-54 216.5 173 67.1
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 2.4e-54 216.1 197 59.4
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 4.2e-54 215.3 203 60.1
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 7.1e-54 214.5 191 60.2
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 7.1e-54 214.5 191 60.2
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 2.1e-53 213.0 195 60.0
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 2.1e-53 213.0 200 61.0
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 2.3e-52 209.5 175 62.9
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 2.3e-52 209.5 197 57.4
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 2.3e-52 209.5 194 58.8
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 3.0e-52 209.1 198 56.1
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 8.7e-52 207.6 144 69.4
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 1.9e-51 206.5 174 64.4
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 5.6e-51 204.9 149 68.5
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 7.4e-51 204.5 149 67.8
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 7.4e-51 204.5 135 73.3
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 7.4e-51 204.5 157 66.9
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 9.6e-51 204.1 155 65.8
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 9.6e-51 204.1 150 68.0
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 1.3e-50 203.8 166 62.7
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 2.1e-50 203.0 123 77.2
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 2.1e-50 203.0 123 77.2
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 2.1e-50 203.0 123 77.2
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 2.1e-50 203.0 123 77.2
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 2.1e-50 203.0 123 77.2
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 2.8e-50 202.6 124 75.8
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 6.2e-50 201.4 158 65.2
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 6.2e-50 201.4 200 55.5
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 8.1e-50 201.1 187 59.9
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 4.0e-49 198.7 113 79.6
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 1.2e-48 197.2 135 68.9
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 1.5e-48 196.8 113 78.8
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 7.6e-48 194.5 172 62.8
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 1.3e-47 193.7 153 62.7
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 3.2e-46 189.1 171 57.3
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 7.1e-46 188.0 179 59.2
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 4.6e-45 185.3 144 63.2
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 7.9e-45 184.5 180 57.2
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 5.1e-44 181.8 150 61.3
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 5.1e-44 181.8 153 60.8
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 8.7e-44 181.0 206 50.5
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 9.6e-43 177.6 171 58.5
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 4.8e-42 175.3 109 75.2
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 8.2e-42 174.5 109 75.2
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 5.3e-41 171.8 155 58.7
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 6.9e-41 171.4 113 68.1
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 3.4e-40 169.1 108 71.3
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.3e-39 167.2 173 49.1
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 6.1e-37 158.3 145 55.2
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 3.9e-36 155.6 128 63.3
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 1.1e-27 127.5 109 51.4
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 3.3e-27 125.9 120 50.8
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 7.4e-27 124.8 153 41.2
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 7.7e-24 114.8 118 48.3
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 8.2e-18 94.7 88 52.3
Actinidia36920 Actinidia chinensis HOM05D006377 ORTHO05D057244 1.0e-12 77.8 143 40.6


User provided reference genes

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