Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 1.4e-187 659.4 322 100.0
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 4.3e-149 531.6 326 81.6
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 4.3e-149 531.6 326 81.6
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 4.8e-148 528.1 324 81.5
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.7e-142 509.6 328 80.2
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 5.1e-142 508.1 329 78.1
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 6.6e-142 507.7 330 77.6
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.1e-141 506.9 329 79.6
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 5.6e-141 504.6 324 77.5
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 7.3e-141 504.2 321 78.5
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 9.6e-141 503.8 324 76.9
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 3.6e-140 501.9 327 77.7
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.8e-140 501.5 326 76.4
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 5.3e-139 498.0 324 75.6
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 2.6e-138 495.7 325 76.6
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 4.5e-138 495.0 354 73.2
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 2.9e-137 492.3 323 75.2
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 3.8e-137 491.9 319 76.2
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 9.3e-136 487.3 326 75.5
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.0e-134 483.8 326 73.6
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 3.9e-134 481.9 324 73.5
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 8.7e-134 480.7 339 72.9
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.9e-133 479.6 320 74.4
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 3.3e-133 478.8 319 74.9
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 5.6e-133 478.0 319 74.9
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 9.6e-133 477.2 319 75.2
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 1.3e-132 476.9 325 72.9
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.3e-132 476.9 319 75.5
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 1.6e-132 476.5 320 74.7
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 2.8e-132 475.7 320 74.7
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 2.8e-132 475.7 319 73.4
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 3.7e-132 475.3 319 74.3
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 3.7e-132 475.3 320 74.1
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 4.8e-132 474.9 323 73.4
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 6.2e-132 474.6 319 74.3
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 8.1e-132 474.2 326 74.5
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.8e-131 473.0 319 74.6
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 3.1e-131 472.2 319 73.4
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 6.9e-131 471.1 316 71.5
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 2.6e-130 469.2 319 74.0
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 3.4e-130 468.8 320 72.5
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 4.5e-130 468.4 298 80.5
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 5.8e-130 468.0 348 69.0
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.5e-128 462.6 322 72.7
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 2.5e-128 462.6 331 72.2
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.6e-127 459.9 315 71.4
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 2.1e-127 459.5 316 72.8
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 2.1e-127 459.5 322 74.2
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 2.1e-127 459.5 322 72.0
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 2.7e-127 459.1 323 71.5
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 6.0e-127 458.0 325 70.8
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 6.0e-127 458.0 321 72.6
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 1.3e-126 456.8 324 71.0
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 1.8e-126 456.4 316 70.6
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 1.8e-126 456.4 325 71.1
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 3.9e-126 455.3 321 72.9
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 3.9e-126 455.3 325 71.4
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 5.1e-126 454.9 324 72.2
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 5.1e-126 454.9 324 72.2
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.5e-125 453.4 335 68.1
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.9e-125 453.0 317 70.0
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 3.3e-125 452.2 324 71.6
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 3.3e-125 452.2 324 71.0
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 3.3e-125 452.2 326 72.4
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 5.7e-125 451.4 311 72.3
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 9.6e-125 450.7 333 68.2
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.3e-124 450.3 320 71.9
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 1.3e-124 450.3 330 69.7
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 2.1e-124 449.5 320 70.3
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.8e-124 449.1 322 71.4
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 2.8e-124 449.1 321 73.2
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 4.8e-124 448.4 313 74.1
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 1.4e-123 446.8 325 69.5
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 2.4e-123 446.0 330 68.2
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.2e-122 443.7 330 68.2
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 2.0e-122 443.0 321 71.3
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 2.6e-122 442.6 309 70.6
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 3.4e-122 442.2 307 71.0
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 5.0e-121 438.3 319 68.3
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 5.0e-121 438.3 313 69.3
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 1.4e-120 436.8 334 68.6
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 1.9e-120 436.4 309 72.2
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 3.2e-120 435.6 326 68.4
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 3.2e-120 435.6 321 69.8
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 5.5e-120 434.9 309 69.6
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.2e-119 433.7 307 70.0
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 7.9e-119 431.0 253 81.8
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 3.0e-118 429.1 292 74.7
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 1.5e-117 426.8 320 68.4
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 1.5e-117 426.8 297 75.4
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 1.9e-117 426.4 300 72.3
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 5.7e-117 424.9 319 68.0
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 2.2e-116 422.9 315 69.8
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 6.3e-116 421.4 312 70.2
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 5.3e-115 418.3 294 74.5
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.2e-114 417.2 289 72.7
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 2.6e-114 416.0 332 66.3
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 7.7e-114 414.5 326 66.9
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 3.8e-113 412.1 324 65.1
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 3.6e-111 405.6 295 71.2
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 2.3e-110 402.9 313 66.5
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 1.1e-109 400.6 294 72.1
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 7.4e-109 397.9 329 62.9
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 1.3e-108 397.1 325 62.5
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 2.2e-108 396.4 297 72.1
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 9.1e-107 391.0 296 68.9
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 7.7e-106 387.9 310 61.0
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 6.1e-103 378.3 245 75.9
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.3e-102 376.3 285 69.8
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.3e-100 370.5 308 65.3
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 2.2e-100 369.8 221 79.2
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 1.2e-98 364.0 340 59.7
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 2.2e-97 359.8 296 63.5
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 3.2e-96 355.9 221 77.4
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.4e-94 350.5 337 58.2
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 9.7e-93 344.4 270 68.1
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 9.1e-91 337.8 237 70.9
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 4.5e-90 335.5 284 61.3
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.0e-89 334.3 297 59.3
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 1.3e-89 334.0 237 73.0
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 3.8e-89 332.4 327 53.5
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 4.0e-86 322.4 267 66.7
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 7.2e-80 301.6 235 71.1
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 3.6e-79 299.3 294 59.9
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.3e-78 296.6 230 65.7
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.6e-74 283.9 164 82.3
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 6.1e-71 271.9 276 51.8
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.8e-70 270.4 197 72.1
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.4e-69 265.8 215 66.0
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 2.9e-68 263.1 232 56.5
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 3.7e-68 262.7 170 71.2
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 4.9e-68 262.3 246 60.6
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 6.4e-68 261.9 272 54.4
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 7.8e-66 255.0 223 63.2
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.1e-63 246.9 221 61.1
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.1e-63 246.9 221 61.1
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 3.4e-61 239.6 189 69.3
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 4.4e-61 239.2 220 60.0
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 1.9e-59 233.8 222 57.2
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.3e-57 227.6 140 77.1
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 1.3e-57 227.6 238 51.7
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 4.3e-56 222.6 184 67.9
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 2.6e-53 213.4 240 52.5
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 6.4e-52 208.8 135 75.6
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 3.3e-48 196.4 244 45.1
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 3.4e-45 186.4 110 79.1
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 5.6e-40 169.1 147 51.7
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 6.2e-39 165.6 237 37.1
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 8.9e-38 161.8 161 49.7
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 2.6e-37 160.2 134 59.0
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 2.6e-37 160.2 112 67.9
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 1.1e-35 154.8 272 42.6
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 1.2e-34 151.4 185 53.0
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 7.8e-34 148.7 121 66.9
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 2.3e-33 147.1 176 48.9
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 2.3e-33 147.1 176 48.9
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 5.1e-33 146.0 176 48.9
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.5e-32 144.4 156 50.0
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 9.9e-29 131.7 82 75.6
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 5.4e-27 125.9 175 51.4
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 4.6e-26 122.9 83 72.3
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 6.0e-26 122.5 98 63.3
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 4.3e-24 116.3 323 31.3
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 8.1e-23 112.1 67 65.7
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 1.8e-22 110.9 112 47.3
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 1.8e-22 110.9 64 67.2
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 4.0e-22 109.8 67 65.7
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 9.0e-22 108.6 120 55.8
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 1.5e-21 107.8 67 65.7
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 2.9e-20 103.6 63 65.1
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 2.9e-20 103.6 63 65.1
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 6.4e-20 102.4 60 65.0
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.2e-18 98.2 80 61.2
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.2e-18 98.2 61 63.9
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 2.1e-18 97.4 68 58.8
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 2.1e-18 97.4 68 58.8
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.0e-17 95.1 67 74.6
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 6.7e-17 92.4 65 56.9
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 6.7e-17 92.4 65 56.9
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 9.6e-16 88.6 107 40.2
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 3.7e-15 86.7 175 36.6
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 1.7e-12 77.8 91 53.8
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 4.9e-12 76.3 91 53.8
Sabra17G0123400 Salix brachista HOM05D000390 ORTHO05D001192 2.1e-07 60.8 44 75.0
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 6.3e-07 59.3 70 42.9
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 1.4e-06 58.2 71 43.7
Cc02_g39210 Coffea canephora HOM05D003601 ORTHO05D004896 6.9e-06 55.8 68 58.8


User provided reference genes

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