Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 2.1e-310 1068.1 525 100.0
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.5e-289 997.7 526 92.0
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 6.8e-277 956.8 526 88.4
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 1.7e-275 952.2 525 88.2
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.7e-275 952.2 526 88.6
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 1.7e-272 942.2 527 87.3
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 3.2e-271 937.9 525 87.2
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 1.8e-269 932.2 532 85.5
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 4.0e-269 931.0 525 86.7
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 6.8e-269 930.2 522 86.2
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 1.7e-267 925.6 525 85.7
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 2.2e-267 925.2 525 85.9
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 2.2e-267 925.2 525 86.3
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 2.8e-267 924.9 535 84.1
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 3.7e-267 924.5 525 86.7
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 6.3e-267 923.7 525 86.5
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.1e-266 922.9 525 85.5
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 1.1e-266 922.9 525 85.7
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.4e-266 922.5 512 85.7
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 1.4e-266 922.5 530 84.9
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 2.4e-266 921.8 523 85.3
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 4.1e-266 921.0 525 85.7
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 5.4e-266 920.6 527 85.4
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 7.0e-266 920.2 521 85.8
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 9.1e-266 919.8 526 85.7
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 9.1e-266 919.8 523 86.2
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 1.2e-265 919.5 526 85.9
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.2e-265 919.5 526 85.7
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 2.0e-265 918.7 522 86.2
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 2.0e-265 918.7 522 86.2
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 2.0e-265 918.7 529 84.3
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 4.5e-265 917.5 530 83.8
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 5.9e-265 917.1 502 88.4
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 5.9e-265 917.1 502 88.0
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 1.0e-264 916.4 502 88.4
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.3e-264 916.0 525 83.0
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.3e-264 916.0 526 85.2
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 1.7e-264 915.6 529 84.1
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.3e-264 915.2 526 85.2
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 2.3e-264 915.2 523 85.5
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 2.9e-264 914.8 523 84.7
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 2.9e-264 914.8 526 85.2
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 2.9e-264 914.8 502 87.8
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 3.8e-264 914.4 525 84.8
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 4.2e-263 911.0 525 84.8
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 5.5e-263 910.6 502 87.5
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 7.2e-263 910.2 526 83.7
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 1.2e-262 909.4 564 80.3
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 1.2e-262 909.4 525 84.4
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 1.6e-262 909.1 500 86.8
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 1.6e-262 909.1 499 87.4
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 2.1e-262 908.7 524 83.8
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 2.8e-262 908.3 502 88.0
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 8.0e-262 906.7 501 86.4
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 1.0e-261 906.4 527 84.1
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 1.4e-261 906.0 523 83.7
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.4e-261 906.0 525 83.8
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 3.0e-261 904.8 527 83.9
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 6.8e-261 903.7 527 83.9
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 8.9e-261 903.3 529 82.6
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 8.9e-261 903.3 522 83.5
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 1.5e-260 902.5 499 86.4
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 1.5e-260 902.5 514 85.2
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 1.5e-260 902.5 514 85.2
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 3.4e-260 901.4 525 83.8
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 4.4e-260 901.0 525 84.0
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 4.4e-260 901.0 528 83.0
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 7.5e-260 900.2 521 84.6
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 9.8e-260 899.8 522 83.7
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 1.3e-259 899.4 502 86.7
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 3.7e-259 897.9 501 86.0
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 3.7e-259 897.9 514 84.6
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 4.9e-259 897.5 501 84.2
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 6.3e-259 897.1 526 82.5
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 6.3e-259 897.1 556 80.4
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.4e-258 896.0 525 82.3
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.4e-258 896.0 522 83.5
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 1.8e-258 895.6 528 82.6
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 1.8e-258 895.6 528 82.6
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 2.4e-258 895.2 527 82.9
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 5.4e-258 894.0 530 82.5
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 1.2e-257 892.9 527 82.0
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 1.6e-257 892.5 527 81.2
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.7e-257 891.7 549 80.0
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 3.5e-257 891.3 528 82.2
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 1.3e-256 889.4 521 83.1
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 1.7e-256 889.0 528 81.8
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 1.7e-256 889.0 528 81.8
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 6.6e-256 887.1 526 81.7
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.5e-255 885.9 522 82.8
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 4.3e-255 884.4 502 85.1
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 4.3e-255 884.4 525 82.7
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 1.6e-254 882.5 522 82.4
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 2.1e-254 882.1 524 82.6
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 6.2e-254 880.6 534 81.3
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.0e-253 879.8 525 81.5
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 2.3e-253 878.6 527 79.9
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 2.3e-253 878.6 529 78.6
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 4.0e-253 877.9 525 81.9
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 2.6e-252 875.2 536 80.4
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 3.4e-252 874.8 527 80.6
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.1e-250 869.8 513 80.7
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 2.4e-250 868.6 527 79.1
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 3.3e-247 858.2 526 78.9
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 3.3e-247 858.2 526 78.9
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 4.7e-246 854.4 529 77.1
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 2.1e-241 839.0 500 82.4
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 1.1e-237 826.6 500 79.4
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 6.4e-235 817.4 520 75.0
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 1.6e-233 812.8 521 74.7
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 6.6e-232 807.4 499 75.8
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 1.5e-231 806.2 566 72.1
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.6e-228 795.4 506 72.9
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 3.8e-227 791.6 532 71.8
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 3.5e-225 785.0 525 70.9
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 3.5e-225 785.0 522 72.0
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 4.0e-221 771.5 524 69.8
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 4.4e-220 768.1 522 71.6
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 8.4e-219 763.8 473 80.5
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.0e-212 742.7 529 72.2
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.3e-208 729.9 525 71.2
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 8.7e-208 727.2 491 69.7
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.4e-205 719.9 412 83.7
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 8.4e-203 710.7 397 88.2
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.4e-197 693.3 525 69.0
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 3.9e-192 675.2 379 87.9
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 8.2e-190 667.5 502 65.9
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 5.9e-188 661.4 538 59.7
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 1.8e-176 623.2 419 76.6
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 1.1e-175 620.5 346 88.7
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 6.5e-171 604.7 344 86.0
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 3.5e-156 555.8 499 59.1
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 1.2e-153 547.4 491 54.0
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 6.3e-150 535.0 294 86.7
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 7.0e-149 531.6 355 74.9
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 3.3e-146 522.7 293 84.3
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 6.6e-139 498.4 275 89.8
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 6.4e-134 481.9 356 69.9
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 1.3e-131 474.2 510 49.4
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 2.0e-127 460.3 502 48.4
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 3.8e-118 429.5 285 76.1
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 5.5e-93 345.9 199 81.9
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 1.0e-78 298.5 422 39.6
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 7.7e-63 245.7 325 45.2
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 2.9e-62 243.8 362 42.5
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 8.0e-44 182.6 125 68.0
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 9.1e-40 169.1 93 84.9
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.0e-27 129.0 98 61.2
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 1.3e-25 122.1 79 74.7
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 1.4e-19 102.1 68 69.1
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 1.3e-17 95.5 81 58.0
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 4.3e-13 80.5 125 41.6
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 7.3e-13 79.7 72 58.3
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 6.8e-11 73.2 48 66.7
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 1.2e-07 62.4 35 77.1


User provided reference genes

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