Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 4.3e-119 431.4 229 100.0
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 8.8e-80 300.8 212 73.6
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 1.8e-77 293.1 214 71.0
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 7.7e-76 287.7 212 70.3
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 1.3e-75 287.0 211 71.1
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 2.2e-75 286.2 212 67.5
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 4.2e-74 282.0 214 68.2
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 2.7e-73 279.3 216 67.1
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 3.6e-73 278.9 214 68.7
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 8.0e-73 277.7 214 68.7
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 5.2e-72 275.0 230 62.2
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 5.2e-72 275.0 221 65.2
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 1.4e-69 266.9 213 65.7
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 2.4e-69 266.2 211 65.4
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 7.0e-69 264.6 220 67.3
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 1.2e-68 263.8 219 64.4
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 1.2e-68 263.8 214 65.4
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 3.5e-68 262.3 212 67.0
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 1.0e-67 260.8 215 65.6
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 3.8e-67 258.8 200 69.0
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 1.1e-66 257.3 200 69.0
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 1.6e-65 253.4 214 65.4
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 3.6e-65 252.3 212 62.7
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 6.1e-65 251.5 206 64.1
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 6.1e-65 251.5 209 66.0
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 5.2e-64 248.4 207 64.3
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 2.6e-63 246.1 203 63.1
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 9.7e-63 244.2 211 62.1
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 9.7e-63 244.2 203 62.6
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 1.3e-62 243.8 200 63.5
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 6.3e-62 241.5 218 60.1
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 8.3e-62 241.1 198 63.6
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 4.1e-61 238.8 202 61.9
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 9.1e-61 237.7 191 64.9
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 1.6e-60 236.9 214 60.3
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 5.9e-60 235.0 200 61.0
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 5.9e-60 235.0 167 70.1
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 7.7e-60 234.6 202 59.4
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 1.0e-59 234.2 209 61.7
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 1.3e-59 233.8 192 64.1
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 1.7e-59 233.4 206 61.7
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 1.7e-59 233.4 206 61.7
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 1.7e-59 233.4 196 62.2
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 3.8e-59 232.3 200 61.5
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 5.0e-59 231.9 205 59.5
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 1.5e-58 230.3 147 78.9
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 1.9e-58 229.9 208 60.6
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 4.2e-58 228.8 209 57.4
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 5.5e-58 228.4 211 58.3
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 7.2e-58 228.0 171 66.7
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 9.4e-58 227.6 200 60.0
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 9.4e-58 227.6 168 65.5
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 1.2e-57 227.3 178 65.2
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 1.6e-57 226.9 198 62.1
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 2.1e-57 226.5 215 57.7
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 4.7e-57 225.3 211 58.3
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.0e-56 224.2 215 56.7
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 1.4e-56 223.8 185 62.7
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 2.3e-56 223.0 211 57.8
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 4.0e-56 222.2 211 57.8
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 4.0e-56 222.2 230 55.7
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 5.2e-56 221.9 221 54.3
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 1.5e-55 220.3 168 65.5
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 2.0e-55 219.9 167 65.9
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 2.0e-55 219.9 249 51.8
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 3.4e-55 219.2 180 61.7
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 3.4e-55 219.2 283 48.8
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 3.7e-54 215.7 211 56.9
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 1.4e-53 213.8 209 56.5
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 2.4e-53 213.0 220 52.7
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 3.1e-53 212.6 213 54.5
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 9.1e-53 211.1 163 65.6
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 4.5e-52 208.8 200 58.0
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 1.5e-50 203.8 218 53.2
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 1.9e-50 203.4 219 51.6
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 3.3e-50 202.6 165 60.6
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 9.5e-50 201.1 221 51.6
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 9.5e-50 201.1 223 54.7
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 1.6e-49 200.3 213 52.1
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 2.1e-49 199.9 162 63.6
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 2.8e-49 199.5 206 52.9
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 8.0e-49 198.0 213 54.0
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 1.0e-48 197.6 200 55.0
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 9.8e-47 191.0 200 53.0
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 2.8e-46 189.5 194 54.1
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 3.7e-46 189.1 209 50.2
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 4.9e-46 188.7 159 60.4
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 6.3e-46 188.3 184 52.2
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 5.4e-45 185.3 212 49.1
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 5.0e-43 178.7 189 51.3
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 2.5e-42 176.4 117 74.4
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 9.5e-42 174.5 200 50.0
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 1.2e-41 174.1 222 49.5
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 3.6e-41 172.6 168 51.2
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 3.6e-41 172.6 168 51.2
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 3.6e-41 172.6 168 51.2
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 4.7e-41 172.2 215 49.8
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 6.1e-41 171.8 168 53.0
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 1.0e-40 171.0 159 57.9
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 1.8e-40 170.2 175 48.0
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 3.1e-40 169.5 174 50.0
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 6.8e-40 168.3 174 48.3
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 1.2e-39 167.5 168 50.6
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 1.2e-39 167.5 173 49.1
Prupe.3G065500 Prunus persica HOM05D005732 ORTHO05D007062 2.0e-39 166.8 114 73.7
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 3.4e-39 166.0 168 50.0
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 5.8e-39 165.2 169 49.7
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 5.8e-39 165.2 169 48.5
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 5.8e-39 165.2 112 73.2
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 1.3e-38 164.1 147 54.4
Duzib160G0019 Durio zibethinus HOM05D005732 ORTHO05D007062 1.7e-38 163.7 165 56.4
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 2.9e-38 162.9 177 46.9
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 6.4e-38 161.8 215 42.3
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 1.1e-37 161.0 176 45.5
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 1.9e-37 160.2 176 44.9
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 1.9e-37 160.2 176 44.9
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 4.1e-37 159.1 176 46.0
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 1.6e-36 157.1 176 50.0
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 1.6e-36 157.1 171 44.4
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 1.6e-36 157.1 176 45.5
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 5.0e-35 152.1 160 50.0
Dinv30452 Davidia involucrata HOM05D005732 ORTHO05D007062 1.1e-34 151.0 118 65.3
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 1.1e-34 151.0 167 47.3
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 1.9e-34 150.2 160 49.4
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 4.3e-34 149.1 160 50.0
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 2.8e-33 146.4 184 43.5
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 2.8e-33 146.4 185 43.2
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 3.6e-33 146.0 160 47.5
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 6.2e-33 145.2 184 42.9
ATR0705G122 Amborella trichopoda HOM05D005732 ORTHO05D007062 1.1e-32 144.4 149 55.7
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 1.8e-32 143.7 160 46.9
vmacro17018 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 1.8e-32 143.7 151 53.0
CDE02G4152 Ceratophyllum demersum HOM05D005732 ORTHO05D007062 1.7e-30 137.1 214 39.3
ClCG09G000040 Citrullus lanatus HOM05D005732 ORTHO05D007062 4.6e-20 102.4 97 53.6
ATR0705G087 Amborella trichopoda HOM05D005732 ORTHO05D007062 5.1e-19 99.0 66 71.2
CARHR074750 Cardamine hirsuta HOM05D005732 ORTHO05D007062 3.2e-13 79.7 70 58.6
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.3e-11 74.3 102 45.1
Eucgr.I01612 Eucalyptus grandis HOM05D003184 ORTHO05D000394 1.6e-09 67.4 186 28.5
Pp3c7_9280 Physcomitrium patens HOM05D017508 ORTHO05D023077 1.1e-08 64.7 163 31.3
TAR622G0113 Trochodendron aralioides HOM05D003184 ORTHO05D000394 1.4e-08 64.3 158 27.8
Sc15g0002000 Simmondsia chinensis HOM05D005732 ORTHO05D007062 2.4e-08 63.5 43 72.1
TAR374G1504 Trochodendron aralioides HOM05D003184 ORTHO05D000394 3.1e-08 63.2 168 29.2
Lsat_1_v5_gn_5_50201 Lactuca sativa HOM05D001151 ORTHO05D001504 6.9e-08 62.0 163 27.6
MBI14_g11685_MAGBIO Magnolia biondii HOM05D005509 ORTHO05D006411 6.9e-08 62.0 150 28.7
CARHR232440 Cardamine hirsuta HOM05D003184 ORTHO05D000394 1.2e-07 61.2 154 31.2
FAN06G2974 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.2e-07 61.2 154 29.2
CARHR049040 Cardamine hirsuta HOM05D005732 ORTHO05D007062 1.5e-07 60.8 40 70.0
FAN01G1468 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.5e-07 60.8 154 29.2
FAN06G1416 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.5e-07 60.8 154 29.2
MD01G1125700 Malus domestica HOM05D005509 ORTHO05D006411 2.0e-07 60.5 154 28.6
FvH4_7g22070 Fragaria vesca HOM05D005509 ORTHO05D006411 3.4e-07 59.7 154 29.9
FAN03G3362 Fragaria x ananassa HOM05D005509 ORTHO05D006411 3.4e-07 59.7 154 29.9
Oeu026200.1 Olea europaea HOM05D001151 ORTHO05D001504 4.4e-07 59.3 162 30.2
RcHm_v2.0_Chr1g0366461 Rosa chinensis HOM05D005509 ORTHO05D006411 7.6e-07 58.5 154 29.9
Dinv25627 Davidia involucrata HOM05D003184 ORTHO05D000394 9.9e-07 58.2 156 26.9
PGR044G0205 Punica granatum HOM05D005509 ORTHO05D006411 9.9e-07 58.2 155 32.3
Sp7g23030 Schrenkiella parvula HOM05D003184 ORTHO05D000394 1.7e-06 57.4 154 31.8
Oeu052855.1 Olea europaea HOM05D002232 ORTHO05D002323 2.2e-06 57.0 148 31.1
Oeu052867.1 Olea europaea HOM05D002232 ORTHO05D002323 2.2e-06 57.0 148 31.1
SEGI_26621 Sequoiadendron giganteum HOM05D005509 ORTHO05D006411 2.2e-06 57.0 130 28.5
CiPaw.01G284800 Carya illinoinensis HOM05D005509 ORTHO05D006411 2.9e-06 56.6 153 29.4
HPP92_001486 Vanilla planifolia HOM05D005509 ORTHO05D006411 3.8e-06 56.2 153 30.1
EL10Ac6g13375 Beta vulgaris HOM05D003184 ORTHO05D000394 4.9e-06 55.8 147 26.5
PGR142G2053 Punica granatum HOM05D003184 ORTHO05D000394 6.4e-06 55.5 149 28.2
TWI63G1706 Tripterygium wilfordii HOM05D005509 ORTHO05D006411 6.4e-06 55.5 116 30.2
Prupe.2G232700 Prunus persica HOM05D005509 ORTHO05D006411 8.4e-06 55.1 152 28.3
PGSC0003DMG400027734 Solanum tuberosum HOM05D005509 ORTHO05D006411 8.4e-06 55.1 138 34.1
TAR362G0497 Trochodendron aralioides HOM05D001151 ORTHO05D001504 8.4e-06 55.1 178 27.5


User provided reference genes

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