Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 5.1e-199 697.6 364 100.0
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 5.2e-143 511.5 363 75.8
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 9.5e-137 490.7 362 73.8
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 8.9e-135 484.2 361 71.5
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 2.6e-134 482.6 362 71.0
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 5.8e-134 481.5 363 70.5
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 9.8e-134 480.7 365 72.6
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 6.4e-133 478.0 378 68.3
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 8.3e-133 477.6 363 67.8
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 1.3e-130 470.3 380 67.1
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 3.9e-130 468.8 361 69.5
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 5.1e-130 468.4 362 67.7
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 6.6e-130 468.0 360 69.7
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 1.2e-128 463.8 362 66.0
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.8e-128 462.6 360 66.7
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 4.7e-128 461.8 364 69.0
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.4e-127 460.3 362 68.0
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.3e-127 459.5 362 68.8
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.3e-127 459.5 362 68.8
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 4.0e-127 458.8 362 66.9
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 5.2e-127 458.4 362 65.7
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 6.8e-127 458.0 361 64.8
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.5e-126 456.8 363 65.3
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 5.8e-126 454.9 378 66.9
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 5.8e-126 454.9 364 66.8
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 9.9e-126 454.1 360 65.6
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 1.3e-125 453.8 361 65.7
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 3.7e-125 452.2 363 66.7
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 1.1e-124 450.7 378 66.4
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 1.1e-124 450.7 364 66.8
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.1e-124 450.7 361 66.8
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.4e-124 450.3 365 67.4
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 1.9e-124 449.9 362 64.6
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.9e-124 449.9 364 66.8
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 5.4e-124 448.4 368 66.6
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 7.1e-124 448.0 381 65.4
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 1.2e-123 447.2 361 64.0
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 2.1e-123 446.4 363 66.4
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 2.7e-123 446.0 364 65.9
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 3.5e-123 445.7 362 66.6
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 3.5e-123 445.7 366 65.6
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 4.6e-123 445.3 361 65.7
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 7.8e-123 444.5 364 66.5
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 2.3e-122 443.0 369 64.0
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 2.3e-122 443.0 365 66.0
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 3.0e-122 442.6 364 65.9
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.9e-122 442.2 359 63.5
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 6.6e-122 441.4 359 63.0
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 1.1e-121 440.7 362 62.7
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.9e-121 439.9 359 63.0
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 2.5e-121 439.5 360 64.4
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 3.3e-121 439.1 361 65.1
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 3.3e-121 439.1 398 62.8
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 5.6e-121 438.3 364 64.6
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 7.3e-121 438.0 364 65.9
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.6e-120 436.8 361 64.0
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 2.8e-120 436.0 361 64.0
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 1.4e-119 433.7 364 66.5
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 2.4e-119 433.0 360 63.9
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 1.2e-118 430.6 362 65.2
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 9.9e-118 427.6 376 59.8
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.7e-117 426.8 376 59.8
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 2.2e-117 426.4 364 62.6
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 2.9e-117 426.0 361 62.0
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 3.8e-117 425.6 362 65.2
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 4.9e-117 425.2 366 62.6
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 4.9e-117 425.2 361 65.4
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 1.9e-116 423.3 429 56.4
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 2.4e-116 422.9 361 62.9
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 4.2e-116 422.2 368 63.0
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 7.1e-116 421.4 378 61.4
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 4.6e-115 418.7 363 64.2
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 3.9e-114 415.6 370 61.1
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 3.9e-114 415.6 364 61.3
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 1.1e-111 407.5 365 62.5
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.5e-110 403.7 336 64.0
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 4.4e-110 402.1 385 59.2
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 4.9e-109 398.7 365 60.8
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 1.2e-107 394.0 343 61.8
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 3.0e-106 389.4 364 61.0
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 3.9e-106 389.0 381 58.5
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 2.5e-105 386.3 363 58.1
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 3.3e-105 386.0 363 58.4
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 8.4e-101 371.3 387 54.5
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.9e-100 370.2 343 60.9
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 3.2e-100 369.4 365 59.7
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 9.3e-100 367.9 365 56.4
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 1.3e-98 364.0 366 55.7
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 1.3e-98 364.0 363 59.0
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.3e-98 363.2 374 58.0
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 5.1e-98 362.1 365 57.3
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 5.6e-97 358.6 372 51.3
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 2.1e-96 356.7 387 52.7
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.1e-95 354.4 366 56.8
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 1.4e-95 354.0 370 54.9
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 5.3e-95 352.1 366 57.1
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 9.0e-95 351.3 384 53.4
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 4.5e-94 349.0 373 55.2
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 5.8e-94 348.6 365 55.3
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 5.8e-94 348.6 362 54.1
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 1.6e-91 340.5 433 47.6
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 1.8e-90 337.0 382 50.8
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 2.3e-90 336.7 382 50.8
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 7.4e-89 331.6 386 52.3
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 9.6e-89 331.3 387 51.2
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 2.4e-87 326.6 353 53.8
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 2.3e-82 310.1 384 47.4
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 3.9e-82 309.3 379 47.5
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 7.4e-81 305.1 387 48.8
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 1.3e-80 304.3 385 48.6
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 1.3e-80 304.3 385 48.6
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 1.4e-79 300.8 381 48.6
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 1.2e-78 297.7 388 49.5
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 1.7e-77 293.9 343 51.9
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 2.4e-71 273.5 239 62.3
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 1.7e-69 267.3 390 42.3
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 8.5e-69 265.0 227 62.1
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 3.2e-68 263.1 297 51.2
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 1.4e-66 257.7 367 44.7
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 4.8e-64 249.2 189 67.2
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 8.5e-61 238.4 366 39.3
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 5.2e-58 229.2 438 35.2
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 4.1e-55 219.5 213 58.2
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 1.3e-53 214.5 283 46.6
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 4.2e-44 183.0 364 34.9
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 1.4e-39 167.9 124 72.6
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 3.8e-37 159.8 119 68.1
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 3.8e-37 159.8 160 55.6
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 4.0e-18 96.7 114 46.5
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 5.2e-18 96.3 67 64.2
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 6.8e-18 95.9 117 52.1
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 3.7e-16 90.1 416 22.6
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 2.4e-15 87.4 60 76.7
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 2.4e-15 87.4 400 25.8
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 2.3e-13 80.9 52 75.0
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 2.3e-13 80.9 61 72.1
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 6.6e-13 79.3 61 70.5
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 4.3e-12 76.6 60 70.0
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 7.3e-12 75.9 249 28.5
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 9.5e-12 75.5 50 72.0
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 9.5e-12 75.5 52 69.2


User provided reference genes

Program Settings