Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11046 Nelumbo nucifera HOM05D006175 ORTHO05D008081 7.3e-22 106.3 53 100.0
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 1.1e-14 82.4 52 75.0
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 2.4e-12 74.7 51 66.7
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 3.4e-11 70.9 51 68.6
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 3.4e-11 70.9 52 63.5
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 3.8e-10 67.4 50 60.0
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 4.9e-10 67.0 46 65.2
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 4.9e-10 67.0 51 56.9
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 4.9e-10 67.0 53 62.3
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 6.4e-10 66.6 50 60.0
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 6.4e-10 66.6 48 66.7
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 6.4e-10 66.6 48 66.7
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 4.2e-09 63.9 50 58.0
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 5.5e-09 63.5 51 58.8
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 5.5e-09 63.5 51 54.9
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 5.5e-09 63.5 50 60.0
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 5.5e-09 63.5 50 56.0
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 7.1e-09 63.2 50 60.0
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 7.1e-09 63.2 50 58.0
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 7.1e-09 63.2 50 60.0
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 7.1e-09 63.2 50 58.0
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 7.1e-09 63.2 50 58.0
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 7.1e-09 63.2 52 57.7
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 9.3e-09 62.8 51 54.9
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 9.3e-09 62.8 46 63.0
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 1.2e-08 62.4 45 64.4
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 1.2e-08 62.4 50 56.0
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 1.6e-08 62.0 51 56.9
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 1.6e-08 62.0 51 56.9
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 2.7e-08 61.2 51 52.9
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 2.7e-08 61.2 50 56.0
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 2.7e-08 61.2 51 60.8
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 2.7e-08 61.2 53 60.4
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 3.5e-08 60.8 50 56.0
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 4.6e-08 60.5 50 56.0
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 6.0e-08 60.1 52 55.8
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 6.0e-08 60.1 52 55.8
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 1.3e-07 58.9 46 56.5
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 1.3e-07 58.9 48 64.6
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 1.8e-07 58.5 52 57.7
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 1.8e-07 58.5 51 52.9
TPR.G28017 Trifolium pratense HOM05D006175 ORTHO05D008081 2.3e-07 58.2 52 53.8
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 3.0e-07 57.8 52 57.7
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 3.9e-07 57.4 48 56.2
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 5.1e-07 57.0 50 52.0
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 8.7e-07 56.2 54 51.9
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 8.7e-07 56.2 50 52.0
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 1.1e-06 55.8 52 51.9
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 1.5e-06 55.5 48 54.2
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 1.9e-06 55.1 52 48.1
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 1.9e-06 55.1 42 57.1
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 2.5e-06 54.7 45 57.8
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 2.5e-06 54.7 48 54.2
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 3.3e-06 54.3 50 54.0
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 4.3e-06 53.9 48 52.1
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 4.3e-06 53.9 48 52.1
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 7.4e-06 53.1 48 52.1
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 7.4e-06 53.1 51 49.0
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 7.4e-06 53.1 48 52.1
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 7.4e-06 53.1 52 51.9


User provided reference genes

Program Settings