Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 5.4e-130 467.6 229 100.0
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.2e-94 349.4 224 75.4
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 1.0e-88 330.5 229 69.0
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.4e-88 330.1 230 70.4
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.4e-85 320.1 224 67.4
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 6.9e-85 317.8 224 68.3
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 2.0e-84 316.2 220 66.8
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 2.6e-84 315.8 224 65.6
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 2.6e-84 315.8 224 66.5
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 7.7e-84 314.3 224 68.8
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 1.3e-83 313.5 224 66.5
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 1.3e-83 313.5 224 64.7
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 3.8e-83 312.0 224 65.2
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 8.5e-83 310.8 224 65.6
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 1.1e-82 310.5 227 64.8
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 1.9e-82 309.7 224 65.2
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 3.2e-82 308.9 224 64.7
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 1.2e-81 307.0 224 62.9
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 2.1e-81 306.2 219 64.4
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 3.6e-81 305.4 224 65.2
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 1.0e-80 303.9 224 63.8
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.0e-80 303.9 223 63.7
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 1.4e-80 303.5 231 62.8
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 2.3e-80 302.8 227 62.1
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 3.9e-80 302.0 227 62.6
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 5.1e-80 301.6 228 62.7
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 8.8e-80 300.8 219 61.6
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 2.0e-79 299.7 229 63.3
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 2.6e-79 299.3 226 64.2
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 2.6e-79 299.3 229 61.1
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 5.7e-79 298.1 220 63.6
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 5.7e-79 298.1 229 63.8
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 7.4e-79 297.7 230 63.9
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 9.7e-79 297.4 221 63.8
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 2.8e-78 295.8 228 61.0
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 4.8e-78 295.0 230 64.8
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 6.3e-78 294.7 228 64.0
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 8.2e-78 294.3 221 61.1
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 8.2e-78 294.3 222 63.1
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 8.2e-78 294.3 219 63.5
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 1.1e-77 293.9 227 60.4
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.4e-77 293.5 229 63.8
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 1.4e-77 293.5 230 62.2
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 5.3e-77 291.6 228 64.0
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.0e-77 291.2 228 64.0
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.0e-77 291.2 228 63.6
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 9.1e-77 290.8 230 63.9
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.2e-76 290.4 226 61.5
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 1.5e-76 290.0 220 60.9
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 2.6e-76 289.3 226 61.5
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.0e-75 287.3 220 62.3
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.0e-75 287.3 224 63.8
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 2.2e-75 286.2 229 61.1
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 2.9e-75 285.8 223 63.2
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 3.8e-75 285.4 230 62.2
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 3.8e-75 285.4 223 63.7
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.0e-75 285.0 188 72.3
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.5e-75 284.6 220 62.7
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 6.5e-75 284.6 229 62.4
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 1.1e-74 283.9 229 58.1
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.4e-74 283.5 219 63.5
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 1.6e-73 280.0 224 62.9
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 4.7e-73 278.5 230 59.6
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 6.7e-72 274.6 226 57.1
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 1.1e-71 273.9 223 61.0
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 2.6e-71 272.7 223 58.3
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 5.7e-71 271.6 223 58.3
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 4.8e-70 268.5 224 56.2
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 1.4e-69 266.9 227 57.7
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 9.1e-69 264.2 227 56.8
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 1.1e-66 257.3 229 53.7
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 2.1e-65 253.1 228 55.3
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 2.1e-65 253.1 228 53.1
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 2.7e-65 252.7 227 55.9
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.1e-65 251.5 220 60.5
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 8.0e-65 251.1 227 53.7
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 1.4e-64 250.4 228 53.9
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 1.4e-64 250.4 227 53.3
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 3.0e-64 249.2 222 55.0
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 3.0e-64 249.2 222 54.5
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 4.0e-64 248.8 227 54.2
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.2e-63 247.3 227 53.3
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.2e-63 247.3 204 57.8
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.2e-63 247.3 204 57.4
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 1.3e-62 243.8 221 53.8
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 1.3e-62 243.8 222 53.6
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 2.8e-62 242.7 222 53.2
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 2.8e-62 242.7 231 52.8
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 3.7e-62 242.3 227 53.3
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 4.8e-62 241.9 246 51.2
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 6.3e-62 241.5 208 58.2
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 4.1e-61 238.8 229 52.8
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 1.2e-60 237.3 224 52.7
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 5.9e-60 235.0 223 53.8
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 1.7e-59 233.4 228 50.0
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 2.2e-59 233.0 227 50.2
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 2.7e-57 226.1 236 48.3
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 6.1e-57 224.9 229 50.2
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.0e-56 224.2 236 48.7
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 1.2e-55 220.7 222 51.8
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 2.0e-55 219.9 220 50.9
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 3.8e-51 205.7 227 46.3
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 4.2e-50 202.2 244 46.7
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 3.6e-49 199.1 232 43.5
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.6e-49 199.1 252 44.4
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.0e-48 196.1 250 43.6
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 8.9e-48 194.5 225 44.9
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 8.9e-48 194.5 139 66.9
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 2.8e-46 189.5 259 40.5
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 3.7e-46 189.1 228 44.3
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 8.3e-46 188.0 237 42.6
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 9.2e-45 184.5 256 39.5
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 1.2e-44 184.1 240 42.9
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.0e-44 183.3 229 43.7
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 7.8e-44 181.4 225 44.4
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 7.8e-44 181.4 231 41.1
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 2.3e-43 179.9 232 44.0
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.3e-43 179.9 225 44.9
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.9e-43 179.5 224 40.6
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 8.6e-43 177.9 259 39.4
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.3e-42 176.0 225 40.9
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.2e-41 174.1 260 38.8
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.8e-41 172.9 226 45.6
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 1.8e-40 170.2 258 36.8
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.1e-40 169.5 252 40.9
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.2e-40 168.7 231 46.8
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 5.2e-40 168.7 232 39.7
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.2e-39 167.5 231 46.3
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 2.9e-38 162.9 216 42.6
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 2.4e-37 159.8 180 44.4
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 2.4e-37 159.8 180 44.4
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 3.5e-36 156.0 222 40.1
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 7.8e-36 154.8 190 42.6
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 1.3e-35 154.1 151 49.7
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 1.9e-34 150.2 159 43.4
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.2e-33 147.5 279 34.4
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 2.1e-33 146.7 311 32.2
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 3.6e-33 146.0 244 37.3
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.0e-32 142.5 277 32.5
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 4.0e-32 142.5 151 47.7
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 5.2e-32 142.1 144 48.6
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 8.9e-32 141.4 232 35.3
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.2e-31 141.0 217 34.6
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 1.5e-31 140.6 211 38.4
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 1.5e-31 140.6 134 51.5
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 3.4e-31 139.4 224 38.4
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 3.4e-31 139.4 152 46.7
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 4.9e-30 135.6 129 50.4
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 1.9e-26 123.6 147 46.3
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 2.5e-26 123.2 140 45.7
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 3.3e-26 122.9 104 52.9
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 2.1e-25 120.2 141 45.4
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 8.1e-25 118.2 140 44.3
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.8e-24 117.1 235 31.1
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 3.4e-23 112.8 114 49.1
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 4.6e-20 102.4 284 27.5
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.8e-20 101.7 230 34.3
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 2.3e-19 100.1 176 32.4
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.6e-17 94.0 75 52.0
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.9e-14 82.4 99 42.4
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.9e-14 82.4 159 33.3
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 8.4e-14 81.6 169 31.4
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 1.0e-11 74.7 244 26.2
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 9.6e-10 68.2 63 50.8


User provided reference genes

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