Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 1.6e-95 352.8 183 100.0
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 5.6e-77 291.2 169 85.2
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 6.4e-73 277.7 164 81.7
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 8.3e-73 277.3 169 82.8
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 1.1e-72 276.9 163 82.2
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 1.1e-72 276.9 164 83.5
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.8e-72 276.2 164 81.7
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 1.2e-71 273.5 164 82.9
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 3.5e-71 271.9 165 83.6
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 4.6e-71 271.6 166 80.7
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 3.0e-70 268.9 164 81.1
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 5.0e-70 268.1 165 81.2
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 5.0e-70 268.1 166 78.3
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 5.0e-70 268.1 165 82.4
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.1e-69 266.9 169 79.9
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.1e-69 266.9 167 80.2
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.5e-69 266.5 166 78.9
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 1.9e-69 266.2 164 81.1
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.5e-69 265.8 163 81.0
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 3.3e-69 265.4 163 81.0
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.3e-69 265.4 163 81.0
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 3.3e-69 265.4 165 80.0
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 4.3e-69 265.0 164 81.7
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 9.5e-69 263.8 164 80.5
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.2e-68 263.5 166 77.7
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.6e-68 263.1 164 78.7
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.6e-68 263.1 164 80.5
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 2.1e-68 262.7 164 79.9
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.1e-68 262.7 163 80.4
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 4.7e-68 261.5 167 78.4
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 1.4e-67 260.0 163 78.5
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 2.3e-67 259.2 163 83.4
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 3.1e-67 258.8 169 76.9
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 3.1e-67 258.8 164 78.7
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 3.1e-67 258.8 165 80.6
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.5e-66 256.5 164 76.8
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.5e-66 256.5 166 77.1
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 2.0e-66 256.1 175 74.3
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 3.4e-66 255.4 165 77.6
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 3.4e-66 255.4 164 77.4
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.4e-66 255.0 164 74.4
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 4.4e-66 255.0 166 77.1
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 4.4e-66 255.0 166 77.1
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 4.4e-66 255.0 176 73.9
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 9.8e-66 253.8 169 77.5
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.9e-65 252.3 164 76.2
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 2.9e-65 252.3 156 80.1
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 4.9e-65 251.5 165 77.0
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 4.9e-65 251.5 168 75.6
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 4.9e-65 251.5 168 75.6
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 4.9e-65 251.5 172 77.3
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 4.9e-65 251.5 172 77.3
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 4.9e-65 251.5 156 79.5
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 6.4e-65 251.1 182 72.5
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 6.4e-65 251.1 182 72.5
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 6.4e-65 251.1 163 77.9
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.1e-64 250.4 171 75.4
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 1.1e-64 250.4 170 73.5
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 1.4e-64 250.0 163 77.9
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 1.9e-64 249.6 169 74.6
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.9e-64 249.6 169 76.3
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 2.4e-64 249.2 172 76.2
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.4e-64 249.2 164 73.8
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 4.1e-64 248.4 165 74.5
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 4.1e-64 248.4 166 75.9
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 4.1e-64 248.4 165 76.4
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 4.1e-64 248.4 166 75.9
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 4.1e-64 248.4 172 76.2
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 5.4e-64 248.1 170 75.3
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 5.4e-64 248.1 169 76.3
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 7.0e-64 247.7 169 74.0
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 7.0e-64 247.7 164 76.2
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.6e-63 246.5 172 74.4
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 2.0e-63 246.1 167 74.9
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 2.0e-63 246.1 167 74.9
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 2.7e-63 245.7 167 74.9
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 2.7e-63 245.7 172 74.4
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 3.5e-63 245.4 167 74.3
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 4.6e-63 245.0 167 74.3
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 4.6e-63 245.0 167 74.3
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 4.6e-63 245.0 170 72.9
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 4.6e-63 245.0 163 77.3
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 6.0e-63 244.6 169 74.6
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 7.8e-63 244.2 164 75.0
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 7.8e-63 244.2 169 76.3
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 1.7e-62 243.0 137 86.1
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.7e-62 243.0 169 73.4
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 1.9e-61 239.6 167 73.7
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 4.3e-61 238.4 156 76.9
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 4.3e-61 238.4 156 76.9
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 5.6e-61 238.0 135 85.2
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 5.6e-61 238.0 170 71.2
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 7.3e-61 237.7 168 75.6
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 9.5e-61 237.3 168 72.0
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 9.5e-61 237.3 170 70.6
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 1.2e-60 236.9 168 72.0
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.6e-60 236.5 170 74.1
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 2.1e-60 236.1 171 73.7
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 2.1e-60 236.1 171 69.6
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 2.8e-60 235.7 164 71.3
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 2.8e-60 235.7 136 81.6
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 2.8e-60 235.7 171 76.0
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 3.6e-60 235.3 168 70.8
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 4.7e-60 235.0 164 73.2
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 4.7e-60 235.0 168 73.8
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 4.7e-60 235.0 165 71.5
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 4.7e-60 235.0 180 68.9
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 4.7e-60 235.0 164 73.2
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 6.2e-60 234.6 162 71.6
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 8.1e-60 234.2 148 79.7
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 1.4e-59 233.4 168 74.4
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 8.9e-59 230.7 169 68.6
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.2e-58 230.3 171 72.5
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 2.6e-58 229.2 168 72.6
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 1.3e-57 226.9 170 68.2
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.3e-57 226.9 165 69.1
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 2.2e-57 226.1 137 81.8
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 6.4e-57 224.6 153 73.9
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 1.1e-56 223.8 155 78.7
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 1.9e-56 223.0 137 79.6
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 1.9e-56 223.0 145 72.4
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.2e-56 222.2 163 68.1
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 9.2e-56 220.7 163 67.5
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 1.2e-55 220.3 166 68.7
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 2.7e-55 219.2 160 69.4
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.5e-53 213.4 164 65.9
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 1.5e-53 213.4 244 51.6
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 9.5e-53 210.7 159 66.0
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 4.7e-52 208.4 178 62.4
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 6.8e-51 204.5 147 72.8
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 2.6e-50 202.6 119 81.5
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.1e-47 193.0 165 63.0
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 6.6e-46 188.0 126 70.6
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 8.7e-46 187.6 125 66.4
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 3.3e-45 185.7 128 68.8
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 5.6e-45 184.9 169 58.6
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 1.2e-44 183.7 143 62.2
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 8.1e-44 181.0 132 68.2
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 3.8e-41 172.2 178 50.6
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.6e-36 155.6 87 81.6
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.8e-34 148.3 85 78.8
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 7.6e-34 147.9 84 81.0
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 2.1e-31 139.8 90 76.7
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.3e-30 137.1 159 47.8
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 1.8e-30 136.7 130 57.7
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 1.5e-29 133.7 106 65.1
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 3.3e-29 132.5 99 67.7
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 3.3e-29 132.5 169 43.2
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 4.3e-29 132.1 118 58.5
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 2.8e-28 129.4 141 53.2
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 1.6e-23 113.6 127 48.0
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.3e-22 109.8 78 73.1
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 8.7e-22 107.8 118 42.4
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 1.1e-21 107.5 103 58.3
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 1.1e-21 107.5 103 58.3
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 3.7e-20 102.4 105 45.7
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 4.8e-20 102.1 81 65.4
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 4.9e-17 92.0 134 36.6
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.1e-13 80.9 44 84.1
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 7.4e-13 78.2 65 63.1
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 1.6e-12 77.0 80 51.2
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 1.4e-11 73.9 89 38.2
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 2.0e-10 70.1 87 48.3
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 8.5e-09 64.7 79 50.6
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 7.2e-08 61.6 135 32.6
Cc01_g11080 Coffea canephora HOM05D004222 ORTHO05D154025 3.9e-06 55.8 113 34.5


User provided reference genes

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