Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09938 Nelumbo nucifera HOM05D007797 ORTHO05D009741 1.9e-72 275.8 141 100.0
Nn1g10175 Nelumbo nucifera HOM05D007797 ORTHO05D009741 1.9e-72 275.8 141 100.0
Nn1g09983 Nelumbo nucifera HOM05D007797 ORTHO05D009741 6.9e-59 230.7 117 99.1
CAN.G1045.3 Capsicum annuum HOM05D007797 ORTHO05D009741 5.3e-43 177.9 99 91.9
PGSC0003DMG402008334 Solanum tuberosum HOM05D007797 ORTHO05D009741 9.0e-43 177.2 109 85.3
CANSAT16G0024 Cannabis sativa HOM05D007797 ORTHO05D009741 1.0e-41 173.7 94 94.7
Peaxi162Scf00216g00118 Petunia axillaris HOM05D007797 ORTHO05D009741 2.2e-41 172.6 109 83.5
SHI26648 Sapria himalayana HOM05D007797 ORTHO05D009741 6.5e-41 171.0 107 82.2
CAN.G547.14 Capsicum annuum HOM05D007797 ORTHO05D009741 1.2e-39 166.8 99 87.9
Cc00_g01610 Coffea canephora HOM05D007797 ORTHO05D009741 2.1e-39 166.0 94 91.5
Hma1.2p1_0038F.1_g024100 Hydrangea macrophylla HOM05D007797 ORTHO05D009741 2.3e-38 162.5 92 92.4
Gorai.001G167600 Gossypium raimondii HOM05D007797 ORTHO05D009741 1.3e-36 156.8 98 83.7
Rhsim08G0173100 Rhododendron simsii HOM05D002913 ORTHO05D003323 2.1e-36 156.0 110 72.7
CAN.G14.28 Capsicum annuum HOM05D007797 ORTHO05D009741 9.0e-35 150.6 94 84.0
Gohir.D08G087700 Gossypium hirsutum HOM05D007797 ORTHO05D009741 1.2e-34 150.2 98 80.6
CsaV3_UNG208730 Cucumis sativus L. HOM05D007797 ORTHO05D009741 2.6e-34 149.1 91 85.7
Nitab4.5_0001952g0270 Nicotiana tabacum HOM05D007797 ORTHO05D009741 2.6e-34 149.1 86 88.4
Nitab4.5_0000031g0180 Nicotiana tabacum HOM05D008466 ORTHO05D011423 2.1e-31 139.4 86 86.0
Nitab4.5_0002325g0090 Nicotiana tabacum HOM05D008466 ORTHO05D010817 2.1e-31 139.4 86 83.7
Nitab4.5_0008578g0050 Nicotiana tabacum HOM05D008466 ORTHO05D011423 1.0e-30 137.1 79 89.9
Potri.001G285100 Populus trichocarpa HOM05D007797 ORTHO05D009741 5.1e-30 134.8 107 66.4
Gohir.D10G141100 Gossypium hirsutum HOM05D007797 ORTHO05D009741 6.7e-30 134.4 95 71.6
Gorai.011G157000 Gossypium raimondii HOM05D007797 ORTHO05D009741 6.7e-30 134.4 95 71.6
Nitab4.5_0000172g1860 Nicotiana tabacum HOM05D007797 ORTHO05D009741 6.7e-30 134.4 86 82.6
Gohir.A10G125300 Gossypium hirsutum HOM05D007797 ORTHO05D009741 8.7e-30 134.0 95 70.5
Gohir.A05G087550 Gossypium hirsutum HOM05D007797 ORTHO05D009741 1.6e-28 129.8 107 64.5
PGR102G1585 Punica granatum HOM05D007797 ORTHO05D009741 2.8e-28 129.0 102 60.8
Hund02811 Selenicereus undatus HOM05D007797 ORTHO05D009741 4.8e-28 128.3 99 65.7
Gohir.D05G088550 Gossypium hirsutum HOM05D007797 ORTHO05D009741 3.1e-27 125.6 95 69.5
Sabra15G0102600 Salix brachista HOM05D007797 ORTHO05D009741 1.5e-26 123.2 91 71.4
Potri.015G078000 Populus trichocarpa HOM05D007797 ORTHO05D009741 2.6e-26 122.5 91 71.4
PGR044G2108 Punica granatum HOM05D007797 ORTHO05D009741 3.4e-26 122.1 97 60.8
SGA_v2.0_scaffold36G14284 Striga asiatica HOM05D007797 ORTHO05D009741 3.4e-26 122.1 114 57.0
SGA_v2.0_scaffold104G30278 Striga asiatica HOM05D007797 ORTHO05D009741 5.9e-26 121.3 98 63.3
Cc02_g04270 Coffea canephora HOM05D007797 ORTHO05D009741 7.7e-26 120.9 98 63.3
RcHm_v2.0_Chr6g0275631 Rosa chinensis HOM05D007797 ORTHO05D009741 2.9e-25 119.0 98 55.1
Hma1.2p1_0038F.1_g024110 Hydrangea macrophylla HOM05D007797 ORTHO05D009741 6.5e-25 117.9 69 87.0
Ah.01g002110 Amaranthus hybridus HOM05D007797 ORTHO05D009741 8.5e-25 117.5 98 55.1
Lalb_Chr01g0005641 Lupinus albus HOM05D007797 ORTHO05D009741 2.5e-24 115.9 87 65.5
MD11G1291100 Malus domestica HOM05D007797 ORTHO05D009741 2.5e-24 115.9 94 64.9
Lalb_Chr19g0135861 Lupinus albus HOM05D007797 ORTHO05D009741 4.2e-24 115.2 88 63.6
TPR.G4600 Trifolium pratense HOM05D007797 ORTHO05D009741 1.6e-23 113.2 99 55.6
Ca_26932_v3 Cicer arietinum L. HOM05D007797 ORTHO05D009741 3.6e-23 112.1 86 62.8
Glyma.12G099000 Glycine max HOM05D007797 ORTHO05D009741 1.0e-22 110.5 86 61.6
Glyma.06G305600 Glycine max HOM05D007797 ORTHO05D009741 1.4e-22 110.2 86 61.6
Medtr4g048070 Medicago truncatula HOM05D007797 ORTHO05D009741 1.8e-22 109.8 86 60.5
Psat7g157320 Pisum sativum HOM05D007797 ORTHO05D009741 1.8e-22 109.8 86 60.5
TWI39G0893 Tripterygium wilfordii HOM05D007797 ORTHO05D009741 2.3e-22 109.4 107 55.1
VMungo1127G0257 Vigna mungo HOM05D007797 ORTHO05D009741 5.1e-22 108.2 86 59.3
FAN27G1170 Fragaria x ananassa HOM05D007797 ORTHO05D009741 6.7e-22 107.8 89 57.3
FvH4_2g13880 Fragaria vesca HOM05D007797 ORTHO05D009741 8.8e-22 107.5 89 57.3
PSO384G3399 Papaver somniferum HOM05D007797 ORTHO05D009741 8.8e-22 107.5 92 57.6
FAN15G0457 Fragaria x ananassa HOM05D007797 ORTHO05D009741 1.5e-21 106.7 89 57.3
Phvul.008G036400 Phaseolus vulgaris HOM05D007797 ORTHO05D009741 1.5e-21 106.7 86 59.3
PSO135G0291 Papaver somniferum HOM05D007797 ORTHO05D009741 2.0e-21 106.3 92 56.5
CANSAT54G1603 Cannabis sativa HOM05D007797 ORTHO05D009741 3.3e-21 105.5 90 62.2
AUR62012872 Chenopodium quinoa HOM05D007797 ORTHO05D009741 5.7e-21 104.8 92 56.5
AUR62017640 Chenopodium quinoa HOM05D007797 ORTHO05D009741 5.7e-21 104.8 92 56.5
COL.COLO4_35798 Corchorus olitorius HOM05D007797 ORTHO05D009741 7.4e-21 104.4 101 52.5
arahy.Tifrunner.gnm1.ann1.BQ3MLV Arachis hypogaea HOM05D007797 ORTHO05D009741 9.7e-21 104.0 88 58.0
arahy.Tifrunner.gnm1.ann1.WH4ZAG Arachis hypogaea HOM05D007797 ORTHO05D009741 9.7e-21 104.0 88 58.0
Phvul.011G103900 Phaseolus vulgaris HOM05D007797 ORTHO05D009741 2.2e-20 102.8 86 57.0
Ah.01g013130 Amaranthus hybridus HOM05D007797 ORTHO05D009741 3.1e-19 99.0 100 49.0
EL10Ac9g22883 Beta vulgaris HOM05D007797 ORTHO05D009741 3.4e-18 95.5 92 55.4
THA.LOC104799736 Tarenaya hassleriana HOM05D007797 ORTHO05D009741 7.7e-18 94.4 101 45.5
vmacro08745 Vaccinium macrocarpon HOM05D002681 ORTHO05D009741 7.7e-18 94.4 119 51.3
SalBow7G2468 Salvia bowleyana HOM05D000878 ORTHO05D001408 5.5e-16 88.2 96 51.0
Aa31LG3G17450 Aethionema arabicum HOM05D007797 ORTHO05D009741 4.7e-15 85.1 106 43.4
Aqoxy4G02474 Aquilegia oxysepala HOM05D007797 ORTHO05D009741 4.7e-15 85.1 105 43.8
Carub.0006s0813 Capsella rubella HOM05D007797 ORTHO05D009741 3.9e-14 82.0 88 47.7
BcaB05g21543 Brassica carinata HOM05D007797 ORTHO05D009741 6.7e-14 81.3 88 47.7
Carub.0003s2765 Capsella rubella HOM05D007797 ORTHO05D009741 1.1e-13 80.5 88 46.6
Sp6g33770 Schrenkiella parvula HOM05D007797 ORTHO05D009741 1.1e-13 80.5 96 43.8
Thhalv10016099m.g Eutrema salsugineum HOM05D007797 ORTHO05D009741 1.5e-13 80.1 88 46.6
CARHR203780 Cardamine hirsuta HOM05D007797 ORTHO05D009741 2.6e-13 79.3 88 45.5
AL6G20010 Arabidopsis lyrata HOM05D007797 ORTHO05D009741 4.4e-13 78.6 88 45.5
AT4G32210 Arabidopsis thaliana HOM05D007797 ORTHO05D009741 4.4e-13 78.6 95 42.1
AT5G09600 Arabidopsis thaliana HOM05D007797 ORTHO05D009741 4.4e-13 78.6 95 42.1
Nitab4.5_0000580g0170 Nicotiana tabacum HOM05D007797 ORTHO05D009741 2.8e-12 75.9 52 78.8
Nitab4.5_0000925g0080 Nicotiana tabacum HOM05D008923 ORTHO05D011423 1.1e-11 73.9 52 76.9
BolC9t59546H Brassica oleracea HOM05D007797 ORTHO05D009741 4.1e-11 72.0 88 45.5
Nitab4.5_0001796g0310 Nicotiana tabacum HOM05D008923 ORTHO05D011423 4.1e-11 72.0 57 66.7
A10p27750 Brassica napus HOM05D007797 ORTHO05D009741 5.3e-11 71.6 88 44.3
C09p67860 Brassica napus HOM05D007797 ORTHO05D009741 5.3e-11 71.6 88 44.3
BraA10t44826Z Brassica rapa HOM05D007797 ORTHO05D009741 5.3e-11 71.6 88 44.3
CAN.G7.25 Capsicum annuum HOM05D008466 ORTHO05D009741 1.1e-08 63.9 41 80.5
BcaB08g37196 Brassica carinata HOM05D007797 ORTHO05D009741 6.1e-07 58.2 67 46.3
SEGI_33407 Sequoiadendron giganteum HOM05D007797 ORTHO05D009741 1.0e-06 57.4 47 63.8


User provided reference genes

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