Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09985 Nelumbo nucifera HOM05D002965 ORTHO05D011254 1.1e-59 233.0 117 100.0
TAR625G0283 Trochodendron aralioides HOM05D002965 ORTHO05D011254 2.4e-57 225.3 117 96.6
Aqoxy4G01610 Aquilegia oxysepala HOM05D002965 ORTHO05D011254 1.9e-54 215.7 117 92.3
Cpa.g.sc263.25 Carica papaya HOM05D002965 ORTHO05D011254 5.5e-54 214.2 117 92.3
FvH4_c1g00301 Fragaria vesca HOM05D002965 ORTHO05D011254 9.4e-54 213.4 117 93.2
RcHm_v2.0_MTg0499281 Rosa chinensis HOM05D002965 ORTHO05D011254 9.4e-54 213.4 117 93.2
CAN.G309.5 Capsicum annuum HOM05D002965 ORTHO05D011254 1.6e-53 212.6 117 92.3
CAN.G980.8 Capsicum annuum HOM05D002965 ORTHO05D011254 1.6e-53 212.6 117 92.3
HanXRQMTg0579431 Helianthus annuus HOM05D002965 ORTHO05D011254 1.6e-53 212.6 117 92.3
CAN.G2446.1 Capsicum annuum HOM05D002965 ORTHO05D011254 2.1e-53 212.2 117 91.5
CANSAT16G0004 Cannabis sativa HOM05D002965 ORTHO05D011254 4.0e-52 208.0 117 89.7
DCAR_032430 Daucus carota HOM05D002965 ORTHO05D011254 8.8e-52 206.8 117 89.7
Solyc00g500351.1 Solanum lycopersicum HOM05D002965 ORTHO05D011254 1.5e-51 206.1 112 92.9
Zm00001eb181640 Zea mays HOM05D002965 ORTHO05D011254 3.3e-51 204.9 117 89.7
Oeu041040.1 Olea europaea HOM05D002965 ORTHO05D011254 5.7e-51 204.1 117 89.7
SalBow1G6418 Salvia bowleyana HOM05D002965 ORTHO05D011254 5.7e-51 204.1 117 89.7
SalBow1G6521 Salvia bowleyana HOM05D002965 ORTHO05D011254 5.7e-51 204.1 117 89.7
Ah.10g028480 Amaranthus hybridus HOM05D002965 ORTHO05D010183 2.2e-50 202.2 113 87.6
CsaV3_UNG209180 Cucumis sativus L. HOM05D002965 ORTHO05D011254 2.2e-50 202.2 117 85.5
unitig_87.g27937 Utricularia gibba HOM05D002965 ORTHO05D011254 1.8e-49 199.1 117 87.2
Ah.04g159750 Amaranthus hybridus HOM05D002965 ORTHO05D011254 1.3e-42 176.4 101 86.1
Solyc00g500113.1 Solanum lycopersicum HOM05D002965 ORTHO05D011254 1.1e-38 163.3 94 88.3
Manes.01G049465 Manihot esculenta HOM05D002965 ORTHO05D011254 1.8e-36 156.0 88 89.8
Nitab4.5_0000172g1640 Nicotiana tabacum HOM05D002965 ORTHO05D011254 2.8e-29 132.1 117 65.0
Aqoxy12s040 Aquilegia oxysepala HOM05D002965 ORTHO05D011254 1.4e-28 129.8 78 83.3
RcHm_v2.0_Chr6g0245591 Rosa chinensis HOM05D002965 ORTHO05D011254 1.5e-27 126.3 73 86.3
Os12g0424300 Oryza sativa ssp. japonica HOM05D002965 ORTHO05D011254 2.0e-24 115.9 66 87.9
Mapoly0055s0102 Marchantia polymorpha HOM05D002965 ORTHO05D011254 8.0e-21 104.0 89 62.9
SalBow4G1982 Salvia bowleyana HOM05D002965 ORTHO05D011254 1.1e-20 103.6 54 90.7
Mapoly0055s0103 Marchantia polymorpha HOM05D002965 ORTHO05D011254 1.1e-17 93.6 84 60.7
Nitab4.5_0011744g0010 Nicotiana tabacum HOM05D002965 ORTHO05D011254 1.4e-17 93.2 54 85.2
Solyc10g018953.1 Solanum lycopersicum HOM05D002965 ORTHO05D011254 7.0e-17 90.9 110 50.0
Haze_27169 Corylus avellana HOM05D002940 ORTHO05D003344 9.5e-14 80.5 109 36.7
Haze_27170 Corylus avellana HOM05D002940 ORTHO05D003344 9.5e-14 80.5 109 36.7
Nitab4.5_0001796g0220 Nicotiana tabacum HOM05D007924 ORTHO05D017087 1.6e-13 79.7 52 78.8
SMO367G0840 Selaginella moellendorffii HOM05D002940 ORTHO05D011254 1.1e-12 77.0 100 39.0
Pp3c2_23430 Physcomitrium patens HOM05D002965 ORTHO05D011254 1.8e-12 76.3 79 51.9
arahy.Tifrunner.gnm1.ann1.D42DGE Arachis hypogaea HOM05D002940 ORTHO05D003344 3.1e-12 75.5 101 40.6
arahy.Tifrunner.gnm1.ann1.VL5M3T Arachis hypogaea HOM05D002940 ORTHO05D003344 3.1e-12 75.5 101 40.6
Ca_18855_v3 Cicer arietinum L. HOM05D002940 ORTHO05D003344 1.2e-11 73.6 105 38.1
Ca_16127_v3 Cicer arietinum L. HOM05D002940 ORTHO05D003344 1.5e-11 73.2 105 37.1
Ca_30304_v3 Cicer arietinum L. HOM05D002940 ORTHO05D003344 1.5e-11 73.2 105 37.1
Psat7g162680 Pisum sativum HOM05D002940 ORTHO05D003344 1.5e-11 73.2 105 38.1
Phvul.008G213500 Phaseolus vulgaris HOM05D002940 ORTHO05D003344 2.0e-11 72.8 103 39.8
Lalb_Chr17g0339621 Lupinus albus HOM05D002940 ORTHO05D003344 2.6e-11 72.4 101 39.6
VMungo1215G1787 Vigna mungo HOM05D002940 ORTHO05D003344 2.6e-11 72.4 103 39.8
CiPaw.05G227900 Carya illinoinensis HOM05D002940 ORTHO05D003344 3.4e-11 72.0 110 40.0
Gohir.D06G042300 Gossypium hirsutum HOM05D002940 ORTHO05D003344 3.4e-11 72.0 108 37.0
Glyma.02G078000 Glycine max HOM05D002940 ORTHO05D003344 4.4e-11 71.6 103 39.8
Gorai.010G047600 Gossypium raimondii HOM05D002940 ORTHO05D003344 4.4e-11 71.6 108 37.0
Medtr4g081120 Medicago truncatula HOM05D002940 ORTHO05D003344 4.4e-11 71.6 105 38.1
Gohir.A06G041400 Gossypium hirsutum HOM05D002940 ORTHO05D003344 5.8e-11 71.2 108 36.1
Lj3g0011570 Lotus japonicus HOM05D002940 ORTHO05D003344 5.8e-11 71.2 107 38.3
Pp3c15_6860 Physcomitrium patens HOM05D002965 ORTHO05D011254 5.8e-11 71.2 75 48.0
Cfa015965 Carpinus fangiana HOM05D002940 ORTHO05D003344 7.5e-11 70.9 105 42.9
Haze_00517 Corylus avellana HOM05D002940 ORTHO05D003344 7.5e-11 70.9 105 42.9
Haze_01263 Corylus avellana HOM05D002940 ORTHO05D003344 7.5e-11 70.9 105 42.9
Duzib093G0986 Durio zibethinus HOM05D002940 ORTHO05D003344 7.5e-11 70.9 108 38.0
Pp3c22_5010 Physcomitrium patens HOM05D002965 ORTHO05D011254 1.3e-10 70.1 75 46.7
QL02p049208 Quercus lobata HOM05D002940 ORTHO05D003344 1.3e-10 70.1 105 42.9
Cpa.g.sc36.2 Carica papaya HOM05D002940 ORTHO05D003344 2.2e-10 69.3 107 40.2
Carub.0002s2465 Capsella rubella HOM05D002940 ORTHO05D003344 4.9e-10 68.2 105 39.0
Rhsim04G0112300 Rhododendron simsii HOM05D002940 ORTHO05D003344 4.9e-10 68.2 108 38.9
CANSAT01G1113 Cannabis sativa HOM05D002940 ORTHO05D003344 6.4e-10 67.8 107 35.5
Rhsim04G0111800 Rhododendron simsii HOM05D002940 ORTHO05D003344 6.4e-10 67.8 108 38.0
THA.LOC104800179 Tarenaya hassleriana HOM05D002940 ORTHO05D003344 6.4e-10 67.8 107 40.2
AT1G77750 Arabidopsis thaliana HOM05D002940 ORTHO05D003344 1.1e-09 67.0 105 39.0
ClCG03G009300 Citrullus lanatus HOM05D002940 ORTHO05D003344 1.1e-09 67.0 110 40.0
Potri.002G088400 Populus trichocarpa HOM05D002940 ORTHO05D003344 1.1e-09 67.0 105 36.2
Sabra02G0069600 Salix brachista HOM05D002940 ORTHO05D003344 1.1e-09 67.0 105 36.2
AL2G37980 Arabidopsis lyrata HOM05D002940 ORTHO05D003344 1.9e-09 66.2 86 44.2
Ciclev10022660m.g Citrus clementina HOM05D002940 ORTHO05D003344 2.4e-09 65.9 105 36.2
TWI56G0910 Tripterygium wilfordii HOM05D002940 ORTHO05D003344 2.4e-09 65.9 107 34.6
BcaNung06313 Brassica carinata HOM05D002940 ORTHO05D003344 3.2e-09 65.5 108 38.0
PRCOL_00004293 Prasinoderma coloniale HOM05D002940 ORTHO05D003344 4.1e-09 65.1 107 33.6
BcaB05g25073 Brassica carinata HOM05D002940 ORTHO05D003344 5.4e-09 64.7 105 38.1
BcaC03g15767 Brassica carinata HOM05D002940 ORTHO05D003344 5.4e-09 64.7 105 38.1
BcaC08g47595 Brassica carinata HOM05D002940 ORTHO05D003344 5.4e-09 64.7 105 38.1
A02p21790 Brassica napus HOM05D002940 ORTHO05D003344 5.4e-09 64.7 105 38.1
A07p43050 Brassica napus HOM05D002940 ORTHO05D003344 5.4e-09 64.7 105 38.1
C02p35090 Brassica napus HOM05D002940 ORTHO05D003344 5.4e-09 64.7 105 38.1
C06p51700 Brassica napus HOM05D002940 ORTHO05D003344 5.4e-09 64.7 105 38.1
BraA07t31826Z Brassica rapa HOM05D002940 ORTHO05D003344 5.4e-09 64.7 105 38.1
Thhalv10019274m.g Eutrema salsugineum HOM05D002940 ORTHO05D003344 5.4e-09 64.7 105 38.1
Sp5g32920 Schrenkiella parvula HOM05D002940 ORTHO05D003344 5.4e-09 64.7 105 38.1
BolC2t09523H Brassica oleracea HOM05D002940 ORTHO05D003344 7.1e-09 64.3 105 37.1
CARHR071260 Cardamine hirsuta HOM05D002940 ORTHO05D003344 7.1e-09 64.3 105 39.0
CsaV3_5G023340 Cucumis sativus L. HOM05D002940 ORTHO05D003344 9.2e-09 63.9 110 39.1
BcaB03g15926 Brassica carinata HOM05D002940 ORTHO05D003344 1.2e-08 63.5 86 43.0
FvH4_2g26171 Fragaria vesca HOM05D002940 ORTHO05D003344 1.6e-08 63.2 107 37.4
Nitab4.5_0002653g0030 Nicotiana tabacum HOM05D002965 ORTHO05D011068 1.6e-08 63.2 43 72.1
RcHm_v2.0_Chr6g0294601 Rosa chinensis HOM05D002940 ORTHO05D003344 1.6e-08 63.2 107 37.4
Atru.chr1.3247 Acer truncatum HOM05D002940 ORTHO05D003344 2.1e-08 62.8 105 36.2
Atru.chr11.1129 Acer truncatum HOM05D002940 ORTHO05D003344 2.1e-08 62.8 105 36.2
CsaV3_2G026750 Cucumis sativus L. HOM05D002940 ORTHO05D003344 2.1e-08 62.8 103 41.7
Manes.02G159400 Manihot esculenta HOM05D002940 ORTHO05D003344 2.1e-08 62.8 106 36.8
Sed0017097 Sechium edule HOM05D002940 ORTHO05D003344 2.1e-08 62.8 110 39.1
Aa31LG4G7860 Aethionema arabicum HOM05D002940 ORTHO05D003344 2.7e-08 62.4 107 37.4
Pp3c24_11830 Physcomitrium patens HOM05D002940 ORTHO05D003344 2.7e-08 62.4 111 31.5
SEGI_00658 Sequoiadendron giganteum HOM05D002940 ORTHO05D003344 7.8e-08 60.8 108 37.0
HPP92_019612 Vanilla planifolia HOM05D002940 ORTHO05D003344 7.8e-08 60.8 108 33.3
Prupe.1G504900 Prunus persica HOM05D002940 ORTHO05D003344 1.0e-07 60.5 107 34.6
PGR044G0108 Punica granatum HOM05D002940 ORTHO05D003344 1.3e-07 60.1 105 39.0
Eucgr.L03087 Eucalyptus grandis HOM05D002940 ORTHO05D003344 3.0e-07 58.9 105 37.1
MCO01G196 Micromonas commoda HOM05D002940 ORTHO05D003344 3.0e-07 58.9 106 34.0
Zm00001eb054380 Zea mays HOM05D002940 ORTHO05D003344 3.0e-07 58.9 108 32.4
Nn1g08918 Nelumbo nucifera HOM05D002940 ORTHO05D003344 3.9e-07 58.5 117 29.9
Os03g0704000 Oryza sativa ssp. japonica HOM05D002940 ORTHO05D003344 1.5e-06 56.6 108 32.4
SMO364G0129 Selaginella moellendorffii HOM05D002940 ORTHO05D003344 1.9e-06 56.2 106 30.2
Sed0020376 Sechium edule HOM05D002940 ORTHO05D003344 3.3e-06 55.5 108 30.6
ATR0684G219 Amborella trichopoda HOM05D002940 ORTHO05D003344 4.3e-06 55.1 108 29.6
Cc00_g12510 Coffea canephora HOM05D002940 ORTHO05D003344 4.3e-06 55.1 108 29.6
Medtr3g073140 Medicago truncatula HOM05D002940 ORTHO05D003344 4.3e-06 55.1 108 28.7
VMungo1215G1631 Vigna mungo HOM05D002940 ORTHO05D003344 4.3e-06 55.1 108 28.7
MELO3C003061.2 Cucumis melo HOM05D002940 ORTHO05D003344 5.6e-06 54.7 108 29.6
CsaV3_2G026730 Cucumis sativus L. HOM05D002940 ORTHO05D003344 5.6e-06 54.7 108 30.6
DCAR_002816 Daucus carota HOM05D002940 ORTHO05D003344 7.3e-06 54.3 107 31.8
Glyma.04G253300 Glycine max HOM05D002940 ORTHO05D003344 7.3e-06 54.3 108 28.7
Glyma.06G109300 Glycine max HOM05D002940 ORTHO05D003344 7.3e-06 54.3 108 28.7
Oeu005371.1 Olea europaea HOM05D002940 ORTHO05D003344 7.3e-06 54.3 108 29.6
MD10G1050000 Malus domestica HOM05D002940 ORTHO05D003344 9.5e-06 53.9 107 35.5
Sc23g0000890 Simmondsia chinensis HOM05D002940 ORTHO05D003344 9.5e-06 53.9 108 31.5


User provided reference genes

Program Settings