Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09983 Nelumbo nucifera HOM05D007797 ORTHO05D009741 1.4e-60 236.1 119 100.0
Nn1g09938 Nelumbo nucifera HOM05D007797 ORTHO05D009741 2.6e-59 231.9 117 99.1
Nn1g10175 Nelumbo nucifera HOM05D007797 ORTHO05D009741 2.6e-59 231.9 117 99.1
PGSC0003DMG402008334 Solanum tuberosum HOM05D007797 ORTHO05D009741 1.5e-43 179.5 112 84.8
CAN.G1045.3 Capsicum annuum HOM05D007797 ORTHO05D009741 2.6e-43 178.7 99 91.9
Peaxi162Scf00216g00118 Petunia axillaris HOM05D007797 ORTHO05D009741 3.8e-42 174.9 112 83.0
CANSAT16G0024 Cannabis sativa HOM05D007797 ORTHO05D009741 8.4e-42 173.7 94 94.7
SHI26648 Sapria himalayana HOM05D007797 ORTHO05D009741 2.1e-40 169.1 104 83.7
CAN.G547.14 Capsicum annuum HOM05D007797 ORTHO05D009741 6.0e-40 167.5 99 87.9
Cc00_g01610 Coffea canephora HOM05D007797 ORTHO05D009741 1.0e-39 166.8 112 83.0
Hma1.2p1_0038F.1_g024100 Hydrangea macrophylla HOM05D007797 ORTHO05D009741 1.9e-38 162.5 92 92.4
Rhsim08G0173100 Rhododendron simsii HOM05D002913 ORTHO05D003323 2.1e-37 159.1 112 73.2
Gorai.001G167600 Gossypium raimondii HOM05D007797 ORTHO05D009741 8.1e-37 157.1 98 83.7
CAN.G14.28 Capsicum annuum HOM05D007797 ORTHO05D009741 7.6e-35 150.6 94 84.0
Gohir.D08G087700 Gossypium hirsutum HOM05D007797 ORTHO05D009741 7.6e-35 150.6 98 80.6
CsaV3_UNG208730 Cucumis sativus L. HOM05D007797 ORTHO05D009741 2.2e-34 149.1 91 85.7
Nitab4.5_0001952g0270 Nicotiana tabacum HOM05D007797 ORTHO05D009741 2.2e-34 149.1 86 88.4
Nitab4.5_0000031g0180 Nicotiana tabacum HOM05D008466 ORTHO05D011423 1.8e-31 139.4 86 86.0
Nitab4.5_0002325g0090 Nicotiana tabacum HOM05D008466 ORTHO05D010817 1.8e-31 139.4 86 83.7
Nitab4.5_0008578g0050 Nicotiana tabacum HOM05D008466 ORTHO05D011423 8.7e-31 137.1 79 89.9
Gohir.D10G141100 Gossypium hirsutum HOM05D007797 ORTHO05D009741 4.3e-30 134.8 95 71.6
Gorai.011G157000 Gossypium raimondii HOM05D007797 ORTHO05D009741 4.3e-30 134.8 95 71.6
Gohir.A10G125300 Gossypium hirsutum HOM05D007797 ORTHO05D009741 5.7e-30 134.4 95 70.5
Nitab4.5_0000172g1860 Nicotiana tabacum HOM05D007797 ORTHO05D009741 5.7e-30 134.4 86 82.6
Potri.001G285100 Populus trichocarpa HOM05D007797 ORTHO05D009741 5.7e-30 134.4 92 75.0
Gohir.A05G087550 Gossypium hirsutum HOM05D007797 ORTHO05D009741 8.2e-29 130.6 95 70.5
PGR102G1585 Punica granatum HOM05D007797 ORTHO05D009741 3.1e-28 128.6 100 61.0
Hund02811 Selenicereus undatus HOM05D007797 ORTHO05D009741 3.1e-28 128.6 99 65.7
Gohir.D05G088550 Gossypium hirsutum HOM05D007797 ORTHO05D009741 2.0e-27 125.9 95 69.5
Sabra15G0102600 Salix brachista HOM05D007797 ORTHO05D009741 1.3e-26 123.2 91 71.4
Potri.015G078000 Populus trichocarpa HOM05D007797 ORTHO05D009741 2.2e-26 122.5 91 71.4
SGA_v2.0_scaffold36G14284 Striga asiatica HOM05D007797 ORTHO05D009741 2.2e-26 122.5 98 63.3
PGR044G2108 Punica granatum HOM05D007797 ORTHO05D009741 2.9e-26 122.1 97 60.8
SGA_v2.0_scaffold104G30278 Striga asiatica HOM05D007797 ORTHO05D009741 3.8e-26 121.7 98 63.3
Cc02_g04270 Coffea canephora HOM05D007797 ORTHO05D009741 5.0e-26 121.3 98 63.3
RcHm_v2.0_Chr6g0275631 Rosa chinensis HOM05D007797 ORTHO05D009741 1.9e-25 119.4 98 55.1
Hma1.2p1_0038F.1_g024110 Hydrangea macrophylla HOM05D007797 ORTHO05D009741 4.2e-25 118.2 73 83.6
Ah.01g002110 Amaranthus hybridus HOM05D007797 ORTHO05D009741 5.5e-25 117.9 98 55.1
Lalb_Chr01g0005641 Lupinus albus HOM05D007797 ORTHO05D009741 2.1e-24 115.9 87 65.5
MD11G1291100 Malus domestica HOM05D007797 ORTHO05D009741 2.1e-24 115.9 85 69.4
Lalb_Chr19g0135861 Lupinus albus HOM05D007797 ORTHO05D009741 4.6e-24 114.8 88 63.6
TPR.G4600 Trifolium pratense HOM05D007797 ORTHO05D009741 1.3e-23 113.2 86 62.8
Ca_26932_v3 Cicer arietinum L. HOM05D007797 ORTHO05D009741 3.0e-23 112.1 86 62.8
Glyma.12G099000 Glycine max HOM05D007797 ORTHO05D009741 8.7e-23 110.5 86 61.6
Glyma.06G305600 Glycine max HOM05D007797 ORTHO05D009741 1.1e-22 110.2 86 61.6
Medtr4g048070 Medicago truncatula HOM05D007797 ORTHO05D009741 1.5e-22 109.8 86 60.5
Psat7g157320 Pisum sativum HOM05D007797 ORTHO05D009741 1.5e-22 109.8 86 60.5
TWI39G0893 Tripterygium wilfordii HOM05D007797 ORTHO05D009741 2.5e-22 109.0 99 58.6
VMungo1127G0257 Vigna mungo HOM05D007797 ORTHO05D009741 4.3e-22 108.2 86 59.3
FAN27G1170 Fragaria x ananassa HOM05D007797 ORTHO05D009741 5.7e-22 107.8 89 57.3
FvH4_2g13880 Fragaria vesca HOM05D007797 ORTHO05D009741 7.4e-22 107.5 89 57.3
PSO384G3399 Papaver somniferum HOM05D007797 ORTHO05D009741 7.4e-22 107.5 92 57.6
FAN15G0457 Fragaria x ananassa HOM05D007797 ORTHO05D009741 1.3e-21 106.7 89 57.3
Phvul.008G036400 Phaseolus vulgaris HOM05D007797 ORTHO05D009741 1.3e-21 106.7 86 59.3
PSO135G0291 Papaver somniferum HOM05D007797 ORTHO05D009741 1.6e-21 106.3 92 56.5
CANSAT54G1603 Cannabis sativa HOM05D007797 ORTHO05D009741 2.8e-21 105.5 97 58.8
AUR62012872 Chenopodium quinoa HOM05D007797 ORTHO05D009741 4.8e-21 104.8 92 56.5
AUR62017640 Chenopodium quinoa HOM05D007797 ORTHO05D009741 4.8e-21 104.8 92 56.5
COL.COLO4_35798 Corchorus olitorius HOM05D007797 ORTHO05D009741 4.8e-21 104.8 101 52.5
arahy.Tifrunner.gnm1.ann1.BQ3MLV Arachis hypogaea HOM05D007797 ORTHO05D009741 1.1e-20 103.6 88 58.0
arahy.Tifrunner.gnm1.ann1.WH4ZAG Arachis hypogaea HOM05D007797 ORTHO05D009741 1.1e-20 103.6 88 58.0
Phvul.011G103900 Phaseolus vulgaris HOM05D007797 ORTHO05D009741 1.8e-20 102.8 86 57.0
Ah.01g013130 Amaranthus hybridus HOM05D007797 ORTHO05D009741 2.0e-19 99.4 100 49.0
EL10Ac9g22883 Beta vulgaris HOM05D007797 ORTHO05D009741 2.9e-18 95.5 92 55.4
THA.LOC104799736 Tarenaya hassleriana HOM05D007797 ORTHO05D009741 6.5e-18 94.4 101 45.5
vmacro08745 Vaccinium macrocarpon HOM05D002681 ORTHO05D009741 6.5e-18 94.4 113 53.1
SalBow7G2468 Salvia bowleyana HOM05D000878 ORTHO05D001408 1.0e-15 87.0 96 50.0
Aa31LG3G17450 Aethionema arabicum HOM05D007797 ORTHO05D009741 3.0e-15 85.5 93 47.3
Aqoxy4G02474 Aquilegia oxysepala HOM05D007797 ORTHO05D009741 3.9e-15 85.1 87 50.6
Carub.0006s0813 Capsella rubella HOM05D007797 ORTHO05D009741 3.3e-14 82.0 88 47.7
BcaB05g21543 Brassica carinata HOM05D007797 ORTHO05D009741 5.7e-14 81.3 88 47.7
Carub.0003s2765 Capsella rubella HOM05D007797 ORTHO05D009741 9.7e-14 80.5 88 46.6
Sp6g33770 Schrenkiella parvula HOM05D007797 ORTHO05D009741 9.7e-14 80.5 96 43.8
Thhalv10016099m.g Eutrema salsugineum HOM05D007797 ORTHO05D009741 1.3e-13 80.1 88 46.6
CARHR203780 Cardamine hirsuta HOM05D007797 ORTHO05D009741 2.2e-13 79.3 88 45.5
AL6G20010 Arabidopsis lyrata HOM05D007797 ORTHO05D009741 3.7e-13 78.6 88 45.5
AT4G32210 Arabidopsis thaliana HOM05D007797 ORTHO05D009741 3.7e-13 78.6 95 42.1
AT5G09600 Arabidopsis thaliana HOM05D007797 ORTHO05D009741 3.7e-13 78.6 95 42.1
Nitab4.5_0000580g0170 Nicotiana tabacum HOM05D007797 ORTHO05D009741 3.1e-12 75.5 52 78.8
Nitab4.5_0000925g0080 Nicotiana tabacum HOM05D008923 ORTHO05D011423 6.9e-12 74.3 52 76.9
BolC9t59546H Brassica oleracea HOM05D007797 ORTHO05D009741 3.4e-11 72.0 88 45.5
Nitab4.5_0001796g0310 Nicotiana tabacum HOM05D008923 ORTHO05D011423 3.4e-11 72.0 57 66.7
A10p27750 Brassica napus HOM05D007797 ORTHO05D009741 4.5e-11 71.6 88 44.3
C09p67860 Brassica napus HOM05D007797 ORTHO05D009741 4.5e-11 71.6 88 44.3
BraA10t44826Z Brassica rapa HOM05D007797 ORTHO05D009741 4.5e-11 71.6 88 44.3
CAN.G7.25 Capsicum annuum HOM05D008466 ORTHO05D009741 9.4e-09 63.9 41 80.5
SEGI_33407 Sequoiadendron giganteum HOM05D007797 ORTHO05D009741 3.9e-07 58.5 54 57.4
BcaB08g37196 Brassica carinata HOM05D007797 ORTHO05D009741 5.1e-07 58.2 67 46.3


User provided reference genes

Program Settings