Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09980 Nelumbo nucifera HOM05D007194 ORTHO05D009182 1.3e-123 446.4 222 100.0
Aqoxy3G01137 Aquilegia oxysepala HOM05D007194 ORTHO05D009182 2.4e-114 415.6 215 97.2
Lj2P1233T109 Lonicera japonica HOM05D007194 ORTHO05D009182 5.3e-114 414.5 213 97.7
Dinv06723 Davidia involucrata HOM05D007194 ORTHO05D009182 7.6e-113 410.6 213 96.7
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 2.9e-112 408.7 213 96.2
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 2.9e-112 408.7 213 96.2
DCAR_032453 Daucus carota HOM05D007194 ORTHO05D009182 1.9e-111 406.0 213 95.8
CANSAT16G0047 Cannabis sativa HOM05D007194 ORTHO05D009182 4.2e-111 404.8 213 95.3
RcHm_v2.0_MTg0498961 Rosa chinensis HOM05D007194 ORTHO05D009182 3.5e-110 401.7 213 94.8
HanXRQChr16g0504451 Helianthus annuus HOM05D007194 ORTHO05D009182 3.0e-109 398.7 216 93.1
HanXRQMTg0579111 Helianthus annuus HOM05D007194 ORTHO05D009182 3.0e-109 398.7 216 93.1
CAN.G1690.2 Capsicum annuum HOM05D007194 ORTHO05D009182 8.7e-109 397.1 213 93.9
Cfa021340 Carpinus fangiana HOM05D007194 ORTHO05D009182 1.6e-107 392.9 213 93.9
A04p09540 Brassica napus HOM05D007194 ORTHO05D009182 2.8e-107 392.1 216 92.1
BolSC28t60320H Brassica oleracea HOM05D007194 ORTHO05D009182 2.8e-107 392.1 216 92.1
BraSC48t46300Z Brassica rapa HOM05D007194 ORTHO05D009182 2.8e-107 392.1 216 92.1
AT2G07771 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 1.1e-106 390.2 212 92.9
ATMG00900 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 1.1e-106 390.2 212 92.9
Lsat_1_v5_gn_7_100841 Lactuca sativa HOM05D007194 ORTHO05D009182 1.8e-106 389.4 208 93.8
Lsat_1_v5_gn_7_99901 Lactuca sativa HOM05D007194 ORTHO05D009182 1.8e-106 389.4 208 93.8
CARHR283160 Cardamine hirsuta HOM05D007194 ORTHO05D009182 2.4e-106 389.0 212 92.5
Sp3g25540 Schrenkiella parvula HOM05D007194 ORTHO05D009182 2.4e-106 389.0 216 91.7
Gorai.001G165900 Gossypium raimondii HOM05D007194 ORTHO05D009182 6.9e-106 387.5 213 92.5
AL3G44600 Arabidopsis lyrata HOM05D007194 ORTHO05D009182 9.0e-106 387.1 212 92.5
Solyc00g500242.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 3.4e-105 385.2 212 91.5
Solyc00g500277.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 3.4e-105 385.2 212 91.5
Lsat_1_v5_gn_1_67041 Lactuca sativa HOM05D007194 ORTHO05D009182 6.5e-104 380.9 212 90.1
LjContig00315g0023372 Lotus japonicus HOM05D007194 ORTHO05D009182 6.5e-104 380.9 209 92.8
Lalb_Chr00c24g0406951 Lupinus albus HOM05D007194 ORTHO05D009182 6.5e-104 380.9 211 91.5
Sed0021793 Sechium edule HOM05D007194 ORTHO05D009182 8.4e-104 380.6 201 95.0
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.1e-103 380.2 213 89.7
arahy.Tifrunner.gnm1.ann1.14Z8E4 Arachis hypogaea HOM05D007194 ORTHO05D009182 3.2e-103 378.6 209 92.3
arahy.Tifrunner.gnm1.ann1.F9VS0T Arachis hypogaea HOM05D007194 ORTHO05D009182 3.2e-103 378.6 209 92.3
arahy.Tifrunner.gnm1.ann1.SBV1ZL Arachis hypogaea HOM05D007194 ORTHO05D009182 3.2e-103 378.6 209 92.3
SHI36965 Sapria himalayana HOM05D007194 ORTHO05D009182 5.5e-103 377.9 213 89.7
Lalb_Chr17g0337381 Lupinus albus HOM05D007194 ORTHO05D009182 9.3e-103 377.1 211 90.0
CAN.G85.20 Capsicum annuum HOM05D007194 ORTHO05D009182 2.1e-102 375.9 213 90.6
Aa31csc239G110 Aethionema arabicum HOM05D007194 ORTHO05D009182 3.5e-102 375.2 212 90.1
SGA_v2.0_scaffold400G50840 Striga asiatica HOM05D007194 ORTHO05D009182 4.3e-100 368.2 208 89.9
EL10Ac7g17455 Beta vulgaris HOM05D007194 ORTHO05D009182 7.4e-100 367.5 204 91.2
SHI36846 Sapria himalayana HOM05D007194 ORTHO05D009182 1.6e-99 366.3 213 87.3
Psat0s922g0240 Pisum sativum HOM05D007194 ORTHO05D009182 4.8e-99 364.8 197 93.4
TPR.G39619 Trifolium pratense HOM05D007194 ORTHO05D009182 6.3e-99 364.4 199 93.0
Lsat_1_v5_gn_6_37840 Lactuca sativa HOM05D007194 ORTHO05D009182 1.5e-97 359.8 206 87.9
Lsat_1_v5_gn_4_20401 Lactuca sativa HOM05D007194 ORTHO05D009182 2.1e-94 349.4 201 87.1
Ah.10g028440 Amaranthus hybridus HOM05D007194 ORTHO05D009182 2.7e-94 349.0 198 90.4
arahy.Tifrunner.gnm1.ann1.GM5VKV Arachis hypogaea HOM05D007194 ORTHO05D009182 1.4e-93 346.7 209 86.6
Prupe.1G175300 Prunus persica HOM05D007194 ORTHO05D009182 7.4e-92 340.9 209 85.2
AT2G07681 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 6.3e-91 337.8 211 84.4
Sed0000988 Sechium edule HOM05D007194 ORTHO05D009182 5.5e-87 324.7 170 95.3
Sopen00g002730 Solanum pennellii HOM05D007194 ORTHO05D009182 3.6e-86 322.0 178 88.8
Lj5P380T4 Lonicera japonica HOM05D007194 ORTHO05D009182 1.0e-85 320.5 199 82.4
BolSC28t60390H Brassica oleracea HOM05D007194 ORTHO05D009182 3.0e-85 318.9 172 92.4
BraSC48t46335Z Brassica rapa HOM05D007194 ORTHO05D009182 3.0e-85 318.9 172 92.4
Lj2P1235T102 Lonicera japonica HOM05D007194 ORTHO05D009182 3.0e-85 318.9 169 94.7
TWI15G0311 Tripterygium wilfordii HOM05D007194 ORTHO05D009182 2.0e-84 316.2 173 91.3
BolSC28t60422H Brassica oleracea HOM05D007194 ORTHO05D009182 1.5e-79 300.1 172 89.5
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 5.2e-77 291.6 172 84.3
SalBow1G0339 Salvia bowleyana HOM05D007194 ORTHO05D009182 5.7e-76 288.1 153 94.1
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.8e-75 285.0 178 81.5
Eucgr.I01863 Eucalyptus grandis HOM05D007194 ORTHO05D009182 5.9e-73 278.1 213 71.4
ECA039G0021 Erigeron canadensis HOM05D007194 ORTHO05D009182 7.7e-73 277.7 149 92.6
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.3e-72 276.9 166 84.9
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.0e-69 265.8 179 78.8
Lsat_1_v5_gn_5_17681 Lactuca sativa HOM05D007194 ORTHO05D009182 1.4e-66 256.9 158 84.8
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 1.6e-65 253.4 156 83.3
arahy.Tifrunner.gnm1.ann1.UX1VFS Arachis hypogaea HOM05D007194 ORTHO05D009182 3.2e-63 245.7 209 65.6
EL10Ac8g19071 Beta vulgaris HOM05D007194 ORTHO05D009182 3.0e-61 239.2 139 87.1
TAR625G1253 Trochodendron aralioides HOM05D007194 ORTHO05D009182 1.2e-60 237.3 124 96.0
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.6e-57 226.9 130 88.5
QL93p0053_0961 Quercus lobata HOM05D007194 ORTHO05D009182 2.6e-52 209.5 112 91.1
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 1.9e-47 193.4 109 89.0
arahy.Tifrunner.gnm1.ann1.6A3TYM Arachis hypogaea HOM05D007194 ORTHO05D009182 2.5e-47 193.0 107 90.7
CAN.G1542.2 Capsicum annuum HOM05D007194 ORTHO05D009182 2.8e-46 189.5 118 80.5
HanXRQChr05g0135281 Helianthus annuus HOM05D007194 ORTHO05D009182 1.0e-45 187.6 98 94.9
CAN.G889.9 Capsicum annuum HOM05D007194 ORTHO05D009182 2.6e-44 183.0 107 87.9
Lj1P486T6 Lonicera japonica HOM05D007194 ORTHO05D009182 3.4e-44 182.6 108 85.2
ATR0693G113 Amborella trichopoda HOM05D007194 ORTHO05D009182 2.0e-41 173.3 98 86.7
Ca_14744_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 1.9e-39 166.8 88 92.0
SHI26663 Sapria himalayana HOM05D007194 ORTHO05D009182 1.2e-38 164.1 101 84.2
CAN.G1134.4 Capsicum annuum HOM05D007194 ORTHO05D009182 2.3e-37 159.8 110 75.5
Gohir.A08G085962 Gossypium hirsutum HOM05D007194 ORTHO05D009182 1.3e-35 154.1 169 57.4
unitig_87.g27964 Utricularia gibba HOM05D007194 ORTHO05D009182 3.5e-33 146.0 79 93.7
Glyma.19G075000 Glycine max HOM05D007194 ORTHO05D009182 7.8e-33 144.8 73 94.5
CAN.G1001.43 Capsicum annuum HOM05D000927 ORTHO05D000850 1.3e-32 144.1 77 88.3
CAN.G122.10 Capsicum annuum HOM05D007194 ORTHO05D009182 5.1e-32 142.1 75 90.7
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 4.0e-29 132.5 72 86.1
Haze_27474 Corylus avellana HOM05D007194 ORTHO05D009182 8.9e-29 131.3 154 45.5
CAN.G78.2 Capsicum annuum HOM05D007194 ORTHO05D009182 1.5e-28 130.6 68 91.2
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 5.8e-28 128.6 79 81.0
Gohir.A02G088502 Gossypium hirsutum HOM05D007194 ORTHO05D009182 9.9e-28 127.9 69 87.0
ClCG10G007880 Citrullus lanatus HOM05D007194 ORTHO05D009182 1.4e-26 124.0 79 83.5
BraSC48t46286Z Brassica rapa HOM05D007194 ORTHO05D009182 1.2e-25 120.9 68 89.7
Peaxi162Scf00174g01622 Petunia axillaris HOM05D000219 ORTHO05D000226 1.3e-24 117.5 60 95.0
Manes.06G014501 Manihot esculenta HOM05D007194 ORTHO05D009182 2.8e-22 109.8 65 81.5
Solyc12g035840.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 2.8e-22 109.8 69 79.7
Nitab4.5_0000859g0090 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.7e-17 93.2 59 81.4
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.7e-16 90.5 55 83.6
SHI24634 Sapria himalayana HOM05D007194 ORTHO05D009182 1.1e-13 81.3 132 43.2
CAN.G380.6 Capsicum annuum HOM05D007194 ORTHO05D009182 9.0e-13 78.2 55 72.7
Aqoxy4G01620 Aquilegia oxysepala HOM05D007194 ORTHO05D009182 1.3e-11 74.3 38 97.4
SHI49604 Sapria himalayana HOM05D007194 ORTHO05D009182 6.4e-11 72.0 37 94.6
BraSC54t46378Z Brassica rapa HOM05D007194 ORTHO05D009182 2.1e-09 67.0 39 84.6
Dinv00475 Davidia involucrata HOM05D007194 ORTHO05D009182 2.1e-09 67.0 35 91.4
Phvul.007G104600 Phaseolus vulgaris HOM05D007194 ORTHO05D009182 2.3e-08 63.5 46 71.7
PGSC0003DMG400042571 Solanum tuberosum HOM05D007194 ORTHO05D009182 5.1e-08 62.4 44 72.7


User provided reference genes

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