Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.6e-103 379.4 187 100.0
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.6e-103 379.4 187 100.0
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 8.4e-97 357.1 187 95.2
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 9.3e-96 353.6 190 94.2
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 1.6e-95 352.8 184 94.6
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 7.9e-95 350.5 187 94.1
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 7.9e-95 350.5 187 94.1
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 7.9e-95 350.5 187 94.1
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 7.9e-95 350.5 187 94.1
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 1.8e-94 349.4 187 93.0
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 2.3e-94 349.0 187 94.1
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 2.3e-94 349.0 187 94.1
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 2.3e-94 349.0 187 94.1
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 3.0e-94 348.6 188 93.1
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 3.9e-94 348.2 187 93.6
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 3.9e-94 348.2 187 93.6
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 3.9e-94 348.2 187 93.6
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 3.9e-94 348.2 187 94.1
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 5.1e-94 347.8 187 93.0
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 5.1e-94 347.8 187 93.0
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 5.1e-94 347.8 187 93.0
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 5.1e-94 347.8 185 93.5
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 1.1e-93 346.7 187 93.6
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 1.1e-93 346.7 187 93.6
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 1.5e-93 346.3 185 93.5
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 1.6e-92 342.8 187 92.5
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 2.8e-92 342.0 186 91.9
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 2.8e-92 342.0 187 93.0
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 2.8e-92 342.0 187 93.0
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 9.0e-91 337.0 185 91.4
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 2.0e-90 335.9 180 93.3
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 1.3e-89 333.2 188 90.4
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.3e-89 333.2 188 90.4
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 1.3e-89 333.2 188 90.4
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.3e-89 333.2 188 90.4
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 1.3e-89 333.2 185 91.9
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 6.5e-89 330.9 187 89.3
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 8.4e-89 330.5 187 90.4
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 4.2e-88 328.2 188 87.2
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 4.2e-88 328.2 188 87.2
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 4.2e-88 328.2 185 88.6
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 1.2e-87 326.6 184 90.2
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 1.2e-87 326.6 188 87.2
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 1.2e-87 326.6 188 87.2
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.1e-87 325.9 187 89.3
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 2.1e-87 325.9 187 89.3
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 2.3e-86 322.4 188 88.8
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 5.7e-85 317.8 189 87.3
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 2.2e-84 315.8 184 87.0
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 3.1e-83 312.0 191 83.8
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 1.9e-80 302.8 187 83.4
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 7.2e-80 300.8 184 85.3
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 6.7e-78 294.3 174 87.9
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.7e-76 289.7 173 86.1
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 3.7e-76 288.5 185 82.2
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 8.2e-76 287.3 188 79.3
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 1.2e-74 283.5 156 91.7
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 1.2e-74 283.5 173 85.0
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 2.6e-74 282.3 168 87.5
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 5.9e-74 281.2 160 90.0
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 1.7e-73 279.6 160 89.4
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 2.2e-73 279.3 160 88.8
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 1.1e-72 276.9 189 79.4
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 1.4e-72 276.6 154 90.9
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.5e-69 266.5 188 76.1
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 5.3e-67 258.1 168 82.1
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 2.6e-61 239.2 148 84.5
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 1.3e-57 226.9 190 61.6
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 8.0e-55 217.6 135 80.7
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 5.2e-54 214.9 151 75.5
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 2.0e-53 213.0 129 84.5
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 1.6e-50 203.4 180 64.4
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 5.0e-49 198.4 182 61.5
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 8.5e-49 197.6 133 79.7
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 5.5e-48 194.9 176 62.5
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 1.6e-47 193.4 111 86.5
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 1.6e-47 193.4 115 85.2
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 1.0e-46 190.7 183 60.1
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.0e-46 190.7 183 60.1
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 3.0e-46 189.1 183 59.6
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 3.0e-46 189.1 183 59.6
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 3.4e-37 159.1 175 56.6
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.7e-36 156.8 110 77.3
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 6.4e-36 154.8 84 90.5
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 8.3e-36 154.5 110 76.4
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.4e-35 153.7 85 88.2
ClCG06G009270 Citrullus lanatus HOM05D002864 ORTHO05D008485 3.2e-35 152.5 96 79.2
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 9.2e-35 151.0 72 100.0
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 9.2e-35 151.0 107 75.7
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 1.5e-32 143.7 72 95.8
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 2.5e-32 142.9 74 94.6
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 7.3e-32 141.4 68 98.5
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 7.3e-32 141.4 68 98.5
HanXRQChr13g0389471 Helianthus annuus HOM05D002864 ORTHO05D008485 9.5e-32 141.0 86 81.4
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 1.0e-30 137.5 77 88.3
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.4e-30 137.1 109 70.6
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 1.8e-30 136.7 74 87.8
CAN.G1542.4 Capsicum annuum HOM05D002864 ORTHO05D008485 8.9e-30 134.4 106 67.0
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 8.9e-30 134.4 109 69.7
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 5.0e-25 118.6 70 80.0
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 8.6e-25 117.9 74 78.4
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.1e-24 117.5 69 81.2
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.6e-23 112.5 69 76.8
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 1.4e-22 110.5 185 36.8
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.1e-22 109.4 66 78.8
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 6.8e-22 108.2 61 85.2
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 2.0e-21 106.7 71 76.1
arahy.Tifrunner.gnm1.ann1.G1F49J Arachis hypogaea HOM05D002864 ORTHO05D008485 4.4e-21 105.5 67 80.6
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.9e-20 102.1 66 69.7
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.9e-19 100.1 55 85.5
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 9.5e-16 87.8 49 83.7
Nitab4.5_0024895g0040 Nicotiana tabacum HOM05D002864 ORTHO05D008485 6.8e-14 81.6 53 77.4
ClCG02G008120 Citrullus lanatus HOM05D002864 ORTHO05D008485 2.0e-13 80.1 53 77.4
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 1.3e-12 77.4 53 71.7
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.7e-12 75.9 68 58.8
Mapoly0023s0175 Marchantia polymorpha HOM05D002864 ORTHO05D008485 4.9e-12 75.5 62 64.5
Solyc11g043190.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 6.4e-12 75.1 49 73.5
CAN.G1439.9 Capsicum annuum HOM05D002864 ORTHO05D008485 7.1e-11 71.6 39 79.5
Rhsim05G0013600 Rhododendron simsii HOM05D007908 ORTHO05D009653 3.5e-10 69.3 42 81.0
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.6e-10 68.9 36 88.9
C09p10440 Brassica napus HOM05D002864 ORTHO05D008485 5.1e-09 65.5 34 88.2
Nitab4.5_0000317g0150 Nicotiana tabacum HOM05D002578 ORTHO05D002698 5.1e-09 65.5 39 76.9
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 8.6e-09 64.7 36 77.8
Psat1g132440 Pisum sativum HOM05D002864 ORTHO05D007972 1.1e-08 64.3 62 59.7
MELO3C031088.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.5e-08 63.2 40 67.5


User provided reference genes

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