Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 2.1e-96 355.9 210 100.0
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 2.9e-69 265.8 212 77.8
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 2.9e-69 265.8 212 73.1
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 7.1e-68 261.2 214 74.8
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 1.2e-67 260.4 218 77.1
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 2.1e-67 259.6 213 69.5
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 4.6e-67 258.5 213 77.9
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 5.1e-66 255.0 213 70.9
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 9.6e-65 250.8 213 70.4
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 2.1e-64 249.6 211 69.7
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 8.1e-64 247.7 216 69.4
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 1.1e-63 247.3 221 69.2
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.4e-63 246.9 221 72.9
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.4e-63 246.9 221 72.9
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 1.8e-63 246.5 211 72.0
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 6.8e-63 244.6 216 66.2
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 8.9e-63 244.2 231 70.6
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.2e-62 243.8 215 67.9
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.2e-62 243.8 213 73.2
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 2.0e-62 243.0 215 67.0
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 2.0e-62 243.0 224 72.3
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 7.6e-62 241.1 214 67.3
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 7.6e-62 241.1 211 67.8
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 9.9e-62 240.7 226 64.2
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 9.9e-62 240.7 215 69.8
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.7e-61 240.0 217 70.0
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.7e-61 240.0 229 64.6
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.7e-61 240.0 229 64.6
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 2.2e-61 239.6 210 68.6
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 2.9e-61 239.2 216 75.0
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 1.1e-60 237.3 219 67.6
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.4e-60 236.9 229 59.8
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 1.4e-60 236.9 212 67.9
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.4e-60 236.9 213 65.7
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 3.2e-60 235.7 212 72.6
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 3.2e-60 235.7 226 68.6
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 5.4e-60 235.0 235 66.4
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 5.4e-60 235.0 215 64.7
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 9.3e-60 234.2 229 65.5
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.2e-59 233.8 211 70.6
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 2.1e-59 233.0 229 62.9
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.1e-59 233.0 210 64.3
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 3.5e-59 232.3 214 71.0
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 3.5e-59 232.3 214 71.0
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 6.0e-59 231.5 229 62.9
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 7.8e-59 231.1 210 66.7
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 1.3e-58 230.3 208 70.2
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 5.1e-58 228.4 211 73.0
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 6.6e-58 228.0 223 63.2
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 8.7e-58 227.6 211 69.2
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 1.1e-57 227.3 238 64.3
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.1e-57 227.3 238 64.3
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 1.5e-57 226.9 218 67.9
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 1.9e-57 226.5 213 70.4
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 1.9e-57 226.5 210 62.4
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 2.5e-57 226.1 224 65.6
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.5e-57 226.1 127 90.6
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 2.5e-57 226.1 212 66.5
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 7.3e-57 224.6 126 90.5
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 7.3e-57 224.6 206 72.3
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 2.1e-56 223.0 211 64.5
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 4.8e-56 221.9 239 64.0
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 8.1e-56 221.1 200 68.0
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 1.4e-55 220.3 212 70.3
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 1.4e-55 220.3 195 67.7
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 2.4e-55 219.5 126 88.9
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.1e-55 219.2 238 63.0
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 4.0e-55 218.8 224 63.8
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 4.0e-55 218.8 211 59.7
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 5.3e-55 218.4 213 64.3
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.5e-54 216.9 237 56.5
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 7.6e-54 214.5 126 83.3
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 1.3e-53 213.8 127 83.5
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 1.7e-53 213.4 210 63.3
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 1.7e-53 213.4 244 60.7
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.7e-53 213.4 232 64.7
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 1.7e-53 213.4 210 70.5
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 2.2e-53 213.0 214 69.6
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.9e-53 212.6 241 60.2
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 2.9e-53 212.6 210 67.6
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 2.9e-53 212.6 208 68.3
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 4.9e-53 211.8 211 62.1
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 8.4e-53 211.1 212 60.8
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 1.1e-52 210.7 127 85.0
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 1.1e-52 210.7 255 60.8
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 1.4e-52 210.3 210 64.8
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 1.4e-52 210.3 212 67.5
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 4.2e-52 208.8 199 63.8
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 9.3e-52 207.6 210 69.0
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 2.1e-51 206.5 217 65.4
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 3.5e-51 205.7 252 60.7
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 6.0e-51 204.9 124 84.7
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 6.0e-51 204.9 210 66.7
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 1.0e-50 204.1 122 82.8
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 2.3e-50 203.0 260 58.8
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 2.3e-50 203.0 210 66.7
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 2.8e-48 196.1 126 77.8
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 4.8e-48 195.3 211 60.7
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 4.8e-48 195.3 190 70.5
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 6.2e-48 194.9 127 76.4
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 1.8e-47 193.4 224 54.5
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 5.3e-47 191.8 217 56.2
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 2.6e-46 189.5 210 58.6
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 5.8e-46 188.3 215 56.3
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 5.8e-46 188.3 212 58.5
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 5.8e-46 188.3 202 55.4
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.3e-45 187.2 215 57.7
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 1.3e-45 187.2 217 62.7
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 4.9e-45 185.3 208 57.7
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 1.1e-44 184.1 208 58.7
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 1.9e-44 183.3 214 58.4
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 2.4e-44 183.0 214 57.9
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 1.2e-43 180.6 109 84.4
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 4.6e-43 178.7 106 84.9
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.9e-41 173.3 169 65.7
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 5.6e-41 171.8 210 52.4
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 2.8e-40 169.5 128 70.3
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.1e-39 167.5 125 70.4
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 2.4e-39 166.4 213 50.2
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 3.1e-39 166.0 210 51.9
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.2e-38 164.1 207 50.7
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 7.6e-38 161.4 187 58.8
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.3e-37 160.6 197 62.4
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 1.7e-37 160.2 171 62.6
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 1.4e-36 157.1 126 63.5
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 1.4e-36 157.1 101 79.2
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 1.9e-36 156.8 125 64.8
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 2.5e-36 156.4 95 77.9
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 7.1e-36 154.8 109 75.2
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 2.1e-35 153.3 213 48.8
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.1e-35 153.3 213 55.4
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 2.3e-34 149.8 127 63.0
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 3.0e-34 149.4 131 62.6
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 3.0e-34 149.4 197 48.2
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 3.0e-34 149.4 197 48.2
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 1.3e-32 144.1 210 49.0
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 2.8e-32 142.9 133 61.7
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 6.9e-31 138.3 213 45.5
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 9.0e-31 137.9 224 52.2
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 1.4e-28 130.6 178 58.4
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 3.2e-28 129.4 153 58.8
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 9.3e-28 127.9 115 61.7
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 1.2e-27 127.5 128 55.5
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 4.6e-27 125.6 103 60.2
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 7.9e-27 124.8 222 46.8
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 1.8e-26 123.6 146 61.0
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 7.4e-25 118.2 82 75.6
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 9.7e-25 117.9 135 58.5
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 2.2e-21 106.7 79 69.6
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 2.3e-18 96.7 165 50.3
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 6.7e-18 95.1 108 71.3
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 2.8e-16 89.7 108 70.4
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 4.5e-14 82.4 48 77.1
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 8.5e-13 78.2 113 39.8
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 9.4e-12 74.7 120 38.3
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 4.7e-11 72.4 65 52.3
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 7.9e-11 71.6 148 48.0
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.4e-10 70.9 109 47.7
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 1.7e-08 63.9 40 70.0
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 6.3e-08 62.0 37 73.0
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 8.2e-08 61.6 100 39.0


User provided reference genes

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