Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09650 Nelumbo nucifera HOM05D002279 ORTHO05D002644 6.0e-20 99.8 46 100.0
Nn1g02962 Nelumbo nucifera HOM05D002279 ORTHO05D002644 1.2e-12 75.5 37 91.9
CDE05G0265 Ceratophyllum demersum HOM05D002279 ORTHO05D002644 3.5e-12 73.9 37 89.2
TAR365G0294 Trochodendron aralioides HOM05D002279 ORTHO05D002644 7.8e-12 72.8 37 86.5
MBI07_g23231_MAGBIO Magnolia biondii HOM05D002279 ORTHO05D002644 1.7e-11 71.6 37 83.8
Psat3g055080 Pisum sativum HOM05D002279 ORTHO05D002644 1.7e-11 71.6 37 81.1
TAR636G1664 Trochodendron aralioides HOM05D002279 ORTHO05D002644 1.7e-11 71.6 37 86.5
Lj2A1143T49 Lonicera japonica HOM05D002279 ORTHO05D002644 2.3e-11 71.2 37 86.5
VMungo1383G2023 Vigna mungo HOM05D002279 ORTHO05D002644 3.0e-11 70.9 37 81.1
Thhalv10006844m.g Eutrema salsugineum HOM05D002279 ORTHO05D002644 3.9e-11 70.5 37 83.8
MD00G1060100 Malus domestica HOM05D002279 ORTHO05D002644 3.9e-11 70.5 37 78.4
Peaxi162Scf00043g02923 Petunia axillaris HOM05D002279 ORTHO05D002644 3.9e-11 70.5 37 83.8
Sp1g02900 Schrenkiella parvula HOM05D002279 ORTHO05D002644 3.9e-11 70.5 37 83.8
Atru.chr1.1182 Acer truncatum HOM05D002279 ORTHO05D002644 5.1e-11 70.1 37 81.1
ATR0787G201 Amborella trichopoda HOM05D002279 ORTHO05D002644 5.1e-11 70.1 37 86.5
CiPaw.03G270500 Carya illinoinensis HOM05D002279 ORTHO05D002644 5.1e-11 70.1 37 81.1
Migut.D00473 Erythranthe guttata HOM05D002279 ORTHO05D002644 5.1e-11 70.1 54 63.0
Lj1C73G6 Lonicera japonica HOM05D002279 ORTHO05D002644 5.1e-11 70.1 37 83.8
Oeu015430.1 Olea europaea HOM05D002279 ORTHO05D002644 5.1e-11 70.1 37 81.1
THA.LOC104816099 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 5.1e-11 70.1 37 81.1
THA.LOC104826051 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 5.1e-11 70.1 37 81.1
arahy.Tifrunner.gnm1.ann1.CGPP17 Arachis hypogaea HOM05D002279 ORTHO05D002644 6.6e-11 69.7 37 78.4
Cfa002480 Carpinus fangiana HOM05D002279 ORTHO05D002644 6.6e-11 69.7 37 78.4
Ca_08738_v3 Cicer arietinum L. HOM05D002279 ORTHO05D002644 6.6e-11 69.7 37 78.4
Haze_24701 Corylus avellana HOM05D002279 ORTHO05D002644 6.6e-11 69.7 37 78.4
Lj1g0017598 Lotus japonicus HOM05D002279 ORTHO05D002644 6.6e-11 69.7 37 78.4
Medtr7g098430 Medicago truncatula HOM05D002279 ORTHO05D002644 6.6e-11 69.7 37 78.4
Phvul.001G164500 Phaseolus vulgaris HOM05D002279 ORTHO05D002644 6.6e-11 69.7 37 78.4
Prupe.8G215900 Prunus persica HOM05D002279 ORTHO05D002644 8.6e-11 69.3 37 78.4
GSVIVG01028421001 Vitis vinifera HOM05D002279 ORTHO05D002644 8.6e-11 69.3 35 85.7
AL1G13680 Arabidopsis lyrata HOM05D002279 ORTHO05D002644 1.1e-10 68.9 37 81.1
CANSAT01G3007 Cannabis sativa HOM05D002279 ORTHO05D002644 1.1e-10 68.9 37 78.4
Carub.0001s0323 Capsella rubella HOM05D002279 ORTHO05D002644 1.1e-10 68.9 37 81.1
CARHR003420 Cardamine hirsuta HOM05D002279 ORTHO05D002644 1.1e-10 68.9 37 81.1
CDE11G0963 Ceratophyllum demersum HOM05D002279 ORTHO05D002644 1.1e-10 68.9 34 88.2
DCAR_004690 Daucus carota HOM05D002279 ORTHO05D002644 1.1e-10 68.9 37 78.4
Nn3g19779 Nelumbo nucifera HOM05D002279 ORTHO05D002644 1.1e-10 68.9 37 83.8
Oeu052078.1 Olea europaea HOM05D002279 ORTHO05D002644 1.1e-10 68.9 37 81.1
AUR62025445 Chenopodium quinoa HOM05D002279 ORTHO05D002644 1.5e-10 68.6 37 78.4
Ciclev10018866m.g Citrus clementina HOM05D002279 ORTHO05D002644 1.5e-10 68.6 37 78.4
Cc01_g17840 Coffea canephora HOM05D002279 ORTHO05D002644 1.5e-10 68.6 37 78.4
Thhalv10003154m.g Eutrema salsugineum HOM05D002279 ORTHO05D002644 1.5e-10 68.6 37 78.4
Glyma.03G167000 Glycine max HOM05D002279 ORTHO05D002644 1.5e-10 68.6 37 75.7
TPR.G20054 Trifolium pratense HOM05D002279 ORTHO05D002644 1.5e-10 68.6 37 75.7
arahy.Tifrunner.gnm1.ann1.UG1CCZ Arachis hypogaea HOM05D002279 ORTHO05D002644 1.9e-10 68.2 37 75.7
BcaC07g36934 Brassica carinata HOM05D002279 ORTHO05D002644 1.9e-10 68.2 37 81.1
A08p37110 Brassica napus HOM05D002279 ORTHO05D002644 1.9e-10 68.2 37 81.1
C08p00900 Brassica napus HOM05D002279 ORTHO05D002644 1.9e-10 68.2 37 81.1
BolC8t46891H Brassica oleracea HOM05D002279 ORTHO05D002644 1.9e-10 68.2 37 81.1
BraA08t35610Z Brassica rapa HOM05D002279 ORTHO05D002644 1.9e-10 68.2 37 81.1
FvH4_2g20550 Fragaria vesca HOM05D002279 ORTHO05D002644 1.9e-10 68.2 37 81.1
Lalb_Chr20g0113651 Lupinus albus HOM05D002279 ORTHO05D002644 1.9e-10 68.2 37 75.7
TWI18G0730 Tripterygium wilfordii HOM05D002279 ORTHO05D002644 1.9e-10 68.2 37 81.1
A10p02540 Brassica napus HOM05D002279 ORTHO05D002644 2.5e-10 67.8 37 78.4
C05p02340 Brassica napus HOM05D002279 ORTHO05D002644 2.5e-10 67.8 37 78.4
BolC5t29013H Brassica oleracea HOM05D002279 ORTHO05D002644 2.5e-10 67.8 37 78.4
BraA10t42523Z Brassica rapa HOM05D002279 ORTHO05D002644 2.5e-10 67.8 37 78.4
CAN.G536.17 Capsicum annuum HOM05D002279 ORTHO05D002644 2.5e-10 67.8 37 81.1
Dinv34672 Davidia involucrata HOM05D002279 ORTHO05D002644 2.5e-10 67.8 37 83.8
Glyma.19G168100 Glycine max HOM05D002279 ORTHO05D002644 2.5e-10 67.8 37 75.7
Hma1.2p1_1930F.1_g307920 Hydrangea macrophylla HOM05D002279 ORTHO05D002644 2.5e-10 67.8 35 80.0
Aa31LG1G20760 Aethionema arabicum HOM05D002279 ORTHO05D002644 3.3e-10 67.4 37 78.4
Lsat_1_v5_gn_5_181380 Lactuca sativa HOM05D002279 ORTHO05D002644 3.3e-10 67.4 37 78.4
Sed0023704 Sechium edule HOM05D002279 ORTHO05D002644 3.3e-10 67.4 37 78.4
EL10Ac7g17680 Beta vulgaris HOM05D002279 ORTHO05D002644 4.3e-10 67.0 37 75.7
AUR62008790 Chenopodium quinoa HOM05D002279 ORTHO05D002644 4.3e-10 67.0 37 75.7
ECA248G1198 Erigeron canadensis HOM05D002279 ORTHO05D002644 4.3e-10 67.0 37 75.7
RcHm_v2.0_Chr1g0327141 Rosa chinensis HOM05D002279 ORTHO05D002644 4.3e-10 67.0 37 78.4
RcHm_v2.0_Chr6g0286711 Rosa chinensis HOM05D002279 ORTHO05D002644 4.3e-10 67.0 37 78.4
TWI12G1034 Tripterygium wilfordii HOM05D002279 ORTHO05D002644 4.3e-10 67.0 37 78.4
Cpa.g.sc87.24 Carica papaya HOM05D002279 ORTHO05D002644 5.6e-10 66.6 34 85.3
HanXRQChr01g0015001 Helianthus annuus HOM05D002279 ORTHO05D002644 5.6e-10 66.6 37 75.7
Potri.002G257100 Populus trichocarpa HOM05D002279 ORTHO05D002644 5.6e-10 66.6 37 78.4
Sabra02G0195500 Salix brachista HOM05D002279 ORTHO05D002644 5.6e-10 66.6 37 78.4
Sp2g08790 Schrenkiella parvula HOM05D002279 ORTHO05D002644 5.6e-10 66.6 37 78.4
Atru.chr5.1840 Acer truncatum HOM05D002279 ORTHO05D002644 7.3e-10 66.2 37 78.4
Lsat_1_v5_gn_8_92021 Lactuca sativa HOM05D002279 ORTHO05D002644 7.3e-10 66.2 37 78.4
Lalb_Chr01g0019511 Lupinus albus HOM05D002279 ORTHO05D002644 7.3e-10 66.2 35 77.1
HPP92_019939 Vanilla planifolia HOM05D002279 ORTHO05D002644 7.3e-10 66.2 37 81.1
Hma1.2p1_0273F.1_g109230 Hydrangea macrophylla HOM05D002279 ORTHO05D002644 9.5e-10 65.9 37 75.7
Aa31LG5G3310 Aethionema arabicum HOM05D002279 ORTHO05D002644 1.2e-09 65.5 37 70.3
AT1G04080 Arabidopsis thaliana HOM05D002279 ORTHO05D002644 1.2e-09 65.5 37 78.4
CSS0003939 Camellia sinensis var. sinensis HOM05D002279 ORTHO05D002644 1.2e-09 65.5 38 73.7
ClCG06G001450 Citrullus lanatus HOM05D002279 ORTHO05D002644 1.2e-09 65.5 38 73.7
FAN27G1575 Fragaria x ananassa HOM05D002279 ORTHO05D002644 1.2e-09 65.5 37 75.7
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 1.2e-09 65.5 37 81.1
Aqoxy2G03747 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 1.6e-09 65.1 37 75.7
Aqoxy7G02303 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 1.6e-09 65.1 37 75.7
MELO3C022388.2 Cucumis melo HOM05D002279 ORTHO05D002644 1.6e-09 65.1 37 73.0
CsaV3_6G007400 Cucumis sativus L. HOM05D002279 ORTHO05D002644 1.6e-09 65.1 37 73.0
Manes.13G040100 Manihot esculenta HOM05D002279 ORTHO05D002644 1.6e-09 65.1 37 78.4
Dinv16397 Davidia involucrata HOM05D002279 ORTHO05D002644 2.1e-09 64.7 37 81.1
QL09p041322 Quercus lobata HOM05D002279 ORTHO05D002644 2.1e-09 64.7 37 75.7
SGA_v2.0_scaffold1G00650 Striga asiatica HOM05D002279 ORTHO05D002644 2.1e-09 64.7 54 57.4
vmacro14798 Vaccinium macrocarpon HOM05D002279 ORTHO05D002644 2.1e-09 64.7 37 75.7
Ah.08g218250 Amaranthus hybridus HOM05D002279 ORTHO05D002644 2.8e-09 64.3 37 73.0
DCAR_004686 Daucus carota HOM05D002279 ORTHO05D002644 2.8e-09 64.3 37 75.7
MBI10_g26043_MAGBIO Magnolia biondii HOM05D002279 ORTHO05D002644 2.8e-09 64.3 34 79.4
Sc24g0003670 Simmondsia chinensis HOM05D002279 ORTHO05D002644 3.6e-09 63.9 37 75.7
unitig_8.g3073 Utricularia gibba HOM05D002279 ORTHO05D002644 3.6e-09 63.9 54 57.4
SGA_v2.0_scaffold138G35188 Striga asiatica HOM05D002279 ORTHO05D002644 6.2e-09 63.2 54 55.6
Thecc.01G250900 Theobroma cacao HOM05D002279 ORTHO05D002644 6.2e-09 63.2 37 75.7
Zm00001eb007090 Zea mays HOM05D002279 ORTHO05D002644 6.2e-09 63.2 37 81.1
Actinidia37548 Actinidia chinensis HOM05D002279 ORTHO05D002644 8.1e-09 62.8 37 75.7
DCAR_004701 Daucus carota HOM05D002279 ORTHO05D002644 8.1e-09 62.8 36 69.4
Gohir.A11G133300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.4e-08 62.0 37 75.7
COL.COLO4_10571 Corchorus olitorius HOM05D002279 ORTHO05D002644 1.8e-08 61.6 37 73.0
Duzib211G0092 Durio zibethinus HOM05D002279 ORTHO05D002644 1.8e-08 61.6 37 73.0
Gohir.A07G152100 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.8e-08 61.6 37 73.0
Gohir.D07G158300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.8e-08 61.6 37 73.0
Gorai.001G181500 Gossypium raimondii HOM05D002279 ORTHO05D002644 1.8e-08 61.6 37 73.0
Potri.014G192800 Populus trichocarpa HOM05D002279 ORTHO05D002644 1.8e-08 61.6 37 75.7
PGR119G1284 Punica granatum HOM05D002279 ORTHO05D002644 1.8e-08 61.6 37 75.7
Duzib133G0328 Durio zibethinus HOM05D002279 ORTHO05D002644 3.1e-08 60.8 37 73.0
Gohir.A07G204300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 3.1e-08 60.8 37 73.0
Gohir.D07G210300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 3.1e-08 60.8 37 73.0
Gohir.D11G139400 Gossypium hirsutum HOM05D002279 ORTHO05D002644 3.1e-08 60.8 37 73.0
Gorai.001G237700 Gossypium raimondii HOM05D002279 ORTHO05D002644 3.1e-08 60.8 37 73.0
Gorai.007G149700 Gossypium raimondii HOM05D002279 ORTHO05D002644 3.1e-08 60.8 37 73.0
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 3.1e-08 60.8 37 78.4
Zm00001eb400490 Zea mays HOM05D002279 ORTHO05D002644 3.1e-08 60.8 37 75.7
Sabra14G0143400 Salix brachista HOM05D002279 ORTHO05D002644 4.0e-08 60.5 35 77.1
Eucgr.K01429 Eucalyptus grandis HOM05D002279 ORTHO05D002644 1.5e-07 58.5 37 73.0
THA.LOC104801556 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 2.6e-07 57.8 37 67.6
SEGI_41295 Sequoiadendron giganteum HOM05D002279 ORTHO05D002644 3.4e-07 57.4 34 73.5
PSO017G4536 Papaver somniferum HOM05D002279 ORTHO05D002644 4.4e-07 57.0 38 68.4
PSO063G2201 Papaver somniferum HOM05D002279 ORTHO05D002644 4.4e-07 57.0 38 68.4
SEGI_21091 Sequoiadendron giganteum HOM05D002279 ORTHO05D002644 5.8e-07 56.6 34 70.6
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 1.7e-06 55.1 37 64.9
Pp3c1_23160 Physcomitrium patens HOM05D002279 ORTHO05D002644 2.9e-06 54.3 37 59.5
Ciclev10014087m.g Citrus clementina HOM05D002279 ORTHO05D002644 6.4e-06 53.1 54 44.4
Pp3c2_14560 Physcomitrium patens HOM05D002279 ORTHO05D002644 6.4e-06 53.1 37 59.5


User provided reference genes

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