Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09047 Nelumbo nucifera HOM05D001433 ORTHO05D017478 4.4e-16 86.7 39 100.0
Nn8g40720 Nelumbo nucifera HOM05D001433 ORTHO05D017478 2.1e-13 77.8 39 89.7
Nn1g01871 Nelumbo nucifera HOM05D001433 ORTHO05D005019 5.6e-11 69.7 32 90.6
Nn1g05906 Nelumbo nucifera HOM05D001433 ORTHO05D011977 5.6e-11 69.7 32 90.6
HPP92_008165 Vanilla planifolia HOM05D001433 ORTHO05D005019 5.6e-11 69.7 32 90.6
CDE02G2166 Ceratophyllum demersum HOM05D001433 ORTHO05D005019 1.2e-10 68.6 32 87.5
MBI07_g07096_MAGBIO Magnolia biondii HOM05D001433 ORTHO05D005019 1.2e-10 68.6 32 87.5
SEGI_17472 Sequoiadendron giganteum HOM05D001433 ORTHO05D005019 1.2e-10 68.6 32 87.5
Actinidia08638 Actinidia chinensis HOM05D001433 ORTHO05D005019 1.6e-10 68.2 32 87.5
Actinidia34209 Actinidia chinensis HOM05D001433 ORTHO05D005019 1.6e-10 68.2 32 87.5
MBI04_g22056_MAGBIO Magnolia biondii HOM05D001433 ORTHO05D011977 1.6e-10 68.2 32 87.5
TAR629G0032 Trochodendron aralioides HOM05D001433 ORTHO05D005019 1.6e-10 68.2 32 87.5
GSVIVG01029723001 Vitis vinifera HOM05D001433 ORTHO05D017478 1.6e-10 68.2 32 87.5
GSVIVG01038714001 Vitis vinifera HOM05D001433 ORTHO05D005019 1.6e-10 68.2 32 87.5
DCAR_008916 Daucus carota HOM05D001433 ORTHO05D005019 3.6e-10 67.0 32 84.4
MD07G1290500 Malus domestica HOM05D001433 ORTHO05D005019 3.6e-10 67.0 32 84.4
Nn3g19010 Nelumbo nucifera HOM05D001433 ORTHO05D005019 3.6e-10 67.0 32 84.4
TAR375G0916 Trochodendron aralioides HOM05D001433 ORTHO05D005019 3.6e-10 67.0 32 84.4
TAR375G0942 Trochodendron aralioides HOM05D001433 ORTHO05D005019 3.6e-10 67.0 32 84.4
Atru.chr1.150 Acer truncatum HOM05D001433 ORTHO05D005019 4.7e-10 66.6 32 84.4
MBI06_g08464_MAGBIO Magnolia biondii HOM05D001433 ORTHO05D005019 4.7e-10 66.6 32 84.4
PSO063G5383 Papaver somniferum HOM05D001433 ORTHO05D005019 4.7e-10 66.6 32 84.4
PSO170G0996 Papaver somniferum HOM05D001433 ORTHO05D005019 4.7e-10 66.6 32 84.4
SGA_v2.0_scaffold192G40562 Striga asiatica HOM05D001433 ORTHO05D005019 4.7e-10 66.6 32 84.4
ATR0602G279 Amborella trichopoda HOM05D001433 ORTHO05D005019 6.2e-10 66.2 32 84.4
Haze_00186 Corylus avellana HOM05D001433 ORTHO05D005019 6.2e-10 66.2 32 84.4
Nitab4.5_0000714g0070 Nicotiana tabacum HOM05D001433 ORTHO05D005019 6.2e-10 66.2 32 84.4
Nitab4.5_0002492g0040 Nicotiana tabacum HOM05D001433 ORTHO05D005019 6.2e-10 66.2 32 84.4
CAN.G108.62 Capsicum annuum HOM05D001433 ORTHO05D005019 8.1e-10 65.9 32 84.4
Cpa.g.sc3.65 Carica papaya HOM05D001433 ORTHO05D005019 8.1e-10 65.9 32 84.4
CiPaw.06G009900 Carya illinoinensis HOM05D001433 ORTHO05D005019 8.1e-10 65.9 32 84.4
Ciclev10004120m.g Citrus clementina HOM05D001433 ORTHO05D005019 8.1e-10 65.9 32 84.4
Cc02_g01700 Coffea canephora HOM05D001433 ORTHO05D005019 8.1e-10 65.9 32 84.4
Migut.F00228 Erythranthe guttata HOM05D001433 ORTHO05D005019 8.1e-10 65.9 32 84.4
Eucgr.A01471 Eucalyptus grandis HOM05D001433 ORTHO05D005019 8.1e-10 65.9 32 84.4
Gohir.A12G250700 Gossypium hirsutum HOM05D001433 ORTHO05D005019 8.1e-10 65.9 32 84.4
Gohir.D12G251500 Gossypium hirsutum HOM05D001433 ORTHO05D005019 8.1e-10 65.9 32 84.4
Gorai.008G269600 Gossypium raimondii HOM05D001433 ORTHO05D005019 8.1e-10 65.9 32 84.4
MD01G1219500 Malus domestica HOM05D001433 ORTHO05D005019 8.1e-10 65.9 32 81.2
RcHm_v2.0_Chr1g0381001 Rosa chinensis HOM05D001433 ORTHO05D005019 8.1e-10 65.9 32 81.2
Solyc03g083440.4 Solanum lycopersicum HOM05D001433 ORTHO05D005019 8.1e-10 65.9 32 84.4
Sopen03g023210 Solanum pennellii HOM05D001433 ORTHO05D005019 8.1e-10 65.9 32 84.4
unitig_748.g8525 Utricularia gibba HOM05D001433 ORTHO05D005019 8.1e-10 65.9 32 84.4
CSS0007758 Camellia sinensis var. sinensis HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 84.4
CiPaw.05G252100 Carya illinoinensis HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 84.4
Duzib068G1332 Durio zibethinus HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 84.4
Duzib084G0325 Durio zibethinus HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 84.4
Duzib205G1094 Durio zibethinus HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 84.4
Hma1.2p1_0538F.1_g174380 Hydrangea macrophylla HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 84.4
Lsat_1_v5_gn_9_58201 Lactuca sativa HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 84.4
Manes.06G159400 Manihot esculenta HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 84.4
Manes.14G006836 Manihot esculenta HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 84.4
Oeu041044.1 Olea europaea HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 84.4
Oeu041320.1 Olea europaea HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 84.4
Rhsim09G0205100 Rhododendron simsii HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 84.4
SalBow4G0367 Salvia bowleyana HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 81.2
SalBow4G2448 Salvia bowleyana HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 81.2
SMO302G0002 Selaginella moellendorffii HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 81.2
SMO302G0048 Selaginella moellendorffii HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 81.2
SMO353G0329 Selaginella moellendorffii HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 81.2
Thecc.03G195800 Theobroma cacao HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 84.4
TWI14G0941 Tripterygium wilfordii HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 84.4
TWI23G0733 Tripterygium wilfordii HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 84.4
vmacro06546 Vaccinium macrocarpon HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 81.2
vmacro10115 Vaccinium macrocarpon HOM05D001433 ORTHO05D005019 1.1e-09 65.5 32 84.4
Peaxi162Scf00550g00052 Petunia axillaris HOM05D001433 ORTHO05D005019 1.4e-09 65.1 32 81.2
QL09p009601 Quercus lobata HOM05D001433 ORTHO05D005019 1.4e-09 65.1 32 84.4
Rhsim03G0207700 Rhododendron simsii HOM05D001433 ORTHO05D005019 1.4e-09 65.1 32 81.2
Hund11674 Selenicereus undatus HOM05D001433 ORTHO05D005019 1.4e-09 65.1 32 81.2
Aqoxy5G04232 Aquilegia oxysepala HOM05D001433 ORTHO05D005019 1.8e-09 64.7 32 81.2
FvH4_7g31770 Fragaria vesca HOM05D001433 ORTHO05D005019 1.8e-09 64.7 32 78.1
FAN01G1716 Fragaria x ananassa HOM05D001433 ORTHO05D005019 1.8e-09 64.7 32 78.1
FAN03G1831 Fragaria x ananassa HOM05D001433 ORTHO05D005019 1.8e-09 64.7 32 78.1
FAN06G0504 Fragaria x ananassa HOM05D001433 ORTHO05D005019 1.8e-09 64.7 32 78.1
FAN06G0708 Fragaria x ananassa HOM05D001433 ORTHO05D005019 1.8e-09 64.7 32 78.1
FAN10G1144 Fragaria x ananassa HOM05D001433 ORTHO05D005019 1.8e-09 64.7 32 78.1
FAN10G3586 Fragaria x ananassa HOM05D001433 ORTHO05D005019 1.8e-09 64.7 32 78.1
Potri.015G017500 Populus trichocarpa HOM05D001433 ORTHO05D005019 1.8e-09 64.7 32 81.2
Sabra15G0013400 Salix brachista HOM05D001433 ORTHO05D005019 1.8e-09 64.7 32 81.2
TPR.G20023 Trifolium pratense HOM05D001433 ORTHO05D005019 1.8e-09 64.7 32 81.2
arahy.Tifrunner.gnm1.ann1.A1ZC3A Arachis hypogaea HOM05D001433 ORTHO05D005019 2.4e-09 64.3 32 81.2
arahy.Tifrunner.gnm1.ann1.ZYZ79R Arachis hypogaea HOM05D001433 ORTHO05D005019 2.4e-09 64.3 32 81.2
CANSAT21G0603 Cannabis sativa HOM05D001433 ORTHO05D005019 2.4e-09 64.3 32 81.2
ClCG05G008840 Citrullus lanatus HOM05D001433 ORTHO05D005019 2.4e-09 64.3 32 81.2
MELO3C008481.2 Cucumis melo HOM05D001433 ORTHO05D005019 2.4e-09 64.3 32 81.2
CsaV3_3G027930 Cucumis sativus L. HOM05D001433 ORTHO05D005019 2.4e-09 64.3 32 81.2
DCAR_020316 Daucus carota HOM05D001433 ORTHO05D005019 2.4e-09 64.3 32 81.2
Dinv29294 Davidia involucrata HOM05D001433 ORTHO05D005019 2.4e-09 64.3 32 81.2
Glyma.06G127400 Glycine max HOM05D001433 ORTHO05D005019 2.4e-09 64.3 32 81.2
Lalb_Chr08g0240351 Lupinus albus HOM05D001433 ORTHO05D005019 2.4e-09 64.3 32 81.2
Lalb_Chr11g0066781 Lupinus albus HOM05D001433 ORTHO05D005019 2.4e-09 64.3 32 81.2
Phvul.009G053900 Phaseolus vulgaris HOM05D001433 ORTHO05D005019 2.4e-09 64.3 32 81.2
Prupe.2G311700 Prunus persica HOM05D001433 ORTHO05D005019 2.4e-09 64.3 32 81.2
Sed0021586 Sechium edule HOM05D001433 ORTHO05D005019 2.4e-09 64.3 32 81.2
VMungo1309G1831 Vigna mungo HOM05D001433 ORTHO05D005019 2.4e-09 64.3 32 81.2
CSS0050330 Camellia sinensis var. sinensis HOM05D001433 ORTHO05D005019 3.1e-09 63.9 32 81.2
Os05g0555600 Oryza sativa ssp. japonica HOM05D001433 ORTHO05D005019 3.1e-09 63.9 32 81.2
AagrBONN_evm.TU.Sc2ySwM_344.3239 Anthoceros agrestis HOM05D001433 ORTHO05D005019 4.0e-09 63.5 32 81.2
Aqoxy7G00099 Aquilegia oxysepala HOM05D001433 ORTHO05D005019 4.0e-09 63.5 32 78.1
Lj1A1014G37 Lonicera japonica HOM05D001433 ORTHO05D005019 4.0e-09 63.5 32 81.2
Sed0006803 Sechium edule HOM05D001433 ORTHO05D005019 4.0e-09 63.5 32 78.1
GSVIVG01019279001 Vitis vinifera HOM05D001433 ORTHO05D017478 4.0e-09 63.5 32 81.2
Zm00001eb295210 Zea mays HOM05D001433 ORTHO05D017478 4.0e-09 63.5 32 81.2
arahy.Tifrunner.gnm1.ann1.HI2JIU Arachis hypogaea HOM05D001433 ORTHO05D005019 5.2e-09 63.2 32 78.1
CDE10G1071 Ceratophyllum demersum HOM05D001433 ORTHO05D005019 5.2e-09 63.2 32 78.1
Ca_12725_v3 Cicer arietinum L. HOM05D001433 ORTHO05D005019 5.2e-09 63.2 32 78.1
Medtr1g027020 Medicago truncatula HOM05D001433 ORTHO05D005019 5.2e-09 63.2 32 78.1
Psat6g037200 Pisum sativum HOM05D001433 ORTHO05D005019 5.2e-09 63.2 32 78.1
PGR042G1482 Punica granatum HOM05D001433 ORTHO05D005019 5.2e-09 63.2 32 81.2
Sc13g0009760 Simmondsia chinensis HOM05D001433 ORTHO05D005019 5.2e-09 63.2 32 78.1
THA.LOC104811925 Tarenaya hassleriana HOM05D001433 ORTHO05D005019 5.2e-09 63.2 32 78.1
Ah.07g205860 Amaranthus hybridus HOM05D001433 ORTHO05D005019 6.9e-09 62.8 32 78.1
ECA232G2377 Erigeron canadensis HOM05D001433 ORTHO05D005019 6.9e-09 62.8 32 81.2
Glyma.04G236900 Glycine max HOM05D001433 ORTHO05D005019 6.9e-09 62.8 32 78.1
HanXRQChr09g0253001 Helianthus annuus HOM05D001433 ORTHO05D005019 6.9e-09 62.8 32 81.2
HanXRQChr15g0493171 Helianthus annuus HOM05D001433 ORTHO05D005019 6.9e-09 62.8 32 81.2
Lj3C907T3 Lonicera japonica HOM05D001433 ORTHO05D005019 6.9e-09 62.8 32 81.2
Pp3c16_19110 Physcomitrium patens HOM05D001433 ORTHO05D005019 6.9e-09 62.8 32 75.0
vmacro06543 Vaccinium macrocarpon HOM05D001433 ORTHO05D005019 6.9e-09 62.8 32 81.2
Pp3c14_8740 Physcomitrium patens HOM05D001433 ORTHO05D005019 8.9e-09 62.4 32 75.0
SHI02382 Sapria himalayana HOM05D001433 ORTHO05D005019 8.9e-09 62.4 32 81.2
EL10Ac3g05303 Beta vulgaris HOM05D001433 ORTHO05D005019 1.2e-08 62.0 32 75.0
Hund04854 Selenicereus undatus HOM05D001433 ORTHO05D005019 1.2e-08 62.0 32 75.0
arahy.Tifrunner.gnm1.ann1.PQA2H2 Arachis hypogaea HOM05D001433 ORTHO05D017478 1.5e-08 61.6 32 78.1
Potri.012G011700 Populus trichocarpa HOM05D001433 ORTHO05D005019 1.5e-08 61.6 32 78.1
Rhsim03G0207200 Rhododendron simsii HOM05D001433 ORTHO05D005019 1.5e-08 61.6 32 78.1
CDE10G1303 Ceratophyllum demersum HOM05D001433 ORTHO05D005019 2.0e-08 61.2 32 78.1
Glyma.14G162300 Glycine max HOM05D001433 ORTHO05D005019 2.0e-08 61.2 32 78.1
Glyma.19G065600 Glycine max HOM05D001433 ORTHO05D005019 2.0e-08 61.2 32 78.1
Mapoly0002s0330 Marchantia polymorpha HOM05D001433 ORTHO05D005019 2.0e-08 61.2 32 75.0
Phvul.001G076400 Phaseolus vulgaris HOM05D001433 ORTHO05D005019 2.0e-08 61.2 32 78.1
VMungo0647G1305 Vigna mungo HOM05D001433 ORTHO05D005019 2.0e-08 61.2 32 78.1
Lj1g0027622 Lotus japonicus HOM05D001433 ORTHO05D005019 2.6e-08 60.8 32 75.0
GSVIVG01028018001 Vitis vinifera HOM05D001433 ORTHO05D017478 2.6e-08 60.8 31 83.9
Carub.0008s1362 Capsella rubella HOM05D001433 ORTHO05D005019 3.4e-08 60.5 32 75.0
AUR62006114 Chenopodium quinoa HOM05D001433 ORTHO05D005019 3.4e-08 60.5 32 75.0
Thhalv10012414m.g Eutrema salsugineum HOM05D001433 ORTHO05D005019 3.4e-08 60.5 32 75.0
Sabra12G0018500 Salix brachista HOM05D001433 ORTHO05D005019 3.4e-08 60.5 32 75.0
Zm00001eb156610 Zea mays HOM05D001433 ORTHO05D005019 3.4e-08 60.5 32 75.0
Zm00001eb360480 Zea mays HOM05D001433 ORTHO05D005019 3.4e-08 60.5 32 75.0
AUR62019375 Chenopodium quinoa HOM05D001433 ORTHO05D005019 4.4e-08 60.1 32 75.0
Os01g0681900 Oryza sativa ssp. japonica HOM05D001433 ORTHO05D005019 4.4e-08 60.1 32 75.0
Pp3c10_8200 Physcomitrium patens HOM05D001433 ORTHO05D005019 4.4e-08 60.1 32 71.9
Pp3c5_20080 Physcomitrium patens HOM05D001433 ORTHO05D005019 5.8e-08 59.7 32 71.9
Aa31LG3G9620 Aethionema arabicum HOM05D001433 ORTHO05D005019 7.6e-08 59.3 32 71.9
BcaC01g06255 Brassica carinata HOM05D001433 ORTHO05D005019 7.6e-08 59.3 32 71.9
A03p15140 Brassica napus HOM05D001433 ORTHO05D005019 7.6e-08 59.3 32 71.9
C03p17640 Brassica napus HOM05D001433 ORTHO05D005019 7.6e-08 59.3 32 71.9
BolC3t14177H Brassica oleracea HOM05D001433 ORTHO05D005019 7.6e-08 59.3 32 71.9
BraA03t10809Z Brassica rapa HOM05D001433 ORTHO05D005019 7.6e-08 59.3 32 71.9
CARHR266580 Cardamine hirsuta HOM05D001433 ORTHO05D005019 7.6e-08 59.3 32 71.9
Sp6g15593 Schrenkiella parvula HOM05D001433 ORTHO05D005019 7.6e-08 59.3 32 71.9
AL8G28160 Arabidopsis lyrata HOM05D001433 ORTHO05D005019 1.3e-07 58.5 32 71.9
AT5G53460 Arabidopsis thaliana HOM05D001433 ORTHO05D005019 1.3e-07 58.5 32 71.9
Dinv35322 Davidia involucrata HOM05D001433 ORTHO05D005019 2.2e-07 57.8 32 75.0
MBI11_g29950_MAGBIO Magnolia biondii HOM05D001433 ORTHO05D017478 2.9e-07 57.4 31 80.6
CBR_g18718 Chara braunii HOM05D001433 ORTHO05D005019 4.9e-07 56.6 32 71.9
CBR_g31844 Chara braunii HOM05D001433 ORTHO05D005019 9.3e-06 52.4 32 65.6


User provided reference genes

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