Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 7.5e-25 116.3 56 100.0
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.1e-19 98.2 46 100.0
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 1.1e-12 75.9 56 64.3
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 1.1e-12 75.9 46 71.7
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 7.3e-12 73.2 46 67.4
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 7.3e-12 73.2 46 67.4
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 2.8e-11 71.2 46 60.9
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 6.2e-11 70.1 46 60.9
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 8.0e-11 69.7 46 65.2
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 1.1e-10 69.3 46 65.2
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.1e-10 69.3 46 65.2
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 1.1e-10 69.3 45 62.2
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 1.1e-10 69.3 46 63.0
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 1.4e-10 68.9 46 60.9
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 1.4e-10 68.9 47 61.7
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 1.4e-10 68.9 46 58.7
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.8e-10 68.6 46 63.0
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.8e-10 68.6 46 63.0
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 2.3e-10 68.2 46 63.0
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 3.1e-10 67.8 46 63.0
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 5.2e-10 67.0 46 60.9
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 5.2e-10 67.0 46 60.9
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 5.2e-10 67.0 46 58.7
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 5.2e-10 67.0 46 60.9
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 8.9e-10 66.2 51 51.0
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 8.9e-10 66.2 51 51.0
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 8.9e-10 66.2 46 60.9
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 8.9e-10 66.2 46 56.5
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 8.9e-10 66.2 46 58.7
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 1.2e-09 65.9 46 58.7
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 1.2e-09 65.9 42 64.3
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 1.2e-09 65.9 42 64.3
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 1.5e-09 65.5 40 67.5
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.5e-09 65.5 46 54.3
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 1.5e-09 65.5 46 56.5
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 2.0e-09 65.1 46 54.3
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 2.0e-09 65.1 46 58.7
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 2.0e-09 65.1 40 67.5
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 2.0e-09 65.1 40 67.5
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 2.6e-09 64.7 42 61.9
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 2.6e-09 64.7 42 64.3
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 2.6e-09 64.7 39 69.2
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 3.4e-09 64.3 48 52.1
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 3.4e-09 64.3 42 61.9
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 3.4e-09 64.3 46 54.3
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 3.4e-09 64.3 46 54.3
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 3.4e-09 64.3 46 54.3
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 3.4e-09 64.3 46 54.3
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 3.4e-09 64.3 40 62.5
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 3.4e-09 64.3 40 65.0
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 3.4e-09 64.3 47 55.3
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 4.4e-09 63.9 46 56.5
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 4.4e-09 63.9 46 54.3
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 4.4e-09 63.9 46 54.3
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 4.4e-09 63.9 40 65.0
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 4.4e-09 63.9 40 65.0
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 5.8e-09 63.5 48 52.1
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 5.8e-09 63.5 48 52.1
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 5.8e-09 63.5 46 56.5
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 5.8e-09 63.5 43 62.8
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 5.8e-09 63.5 40 60.0
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 7.5e-09 63.2 46 56.5
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 7.5e-09 63.2 44 56.8
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 7.5e-09 63.2 40 60.0
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 7.5e-09 63.2 46 50.0
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 7.5e-09 63.2 43 62.8
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 9.8e-09 62.8 46 56.5
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 9.8e-09 62.8 46 52.2
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 9.8e-09 62.8 46 56.5
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 1.3e-08 62.4 46 54.3
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 1.3e-08 62.4 46 56.5
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 1.7e-08 62.0 44 56.8
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 1.7e-08 62.0 46 58.7
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 1.7e-08 62.0 39 66.7
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 2.2e-08 61.6 47 55.3
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 2.2e-08 61.6 46 52.2
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 2.2e-08 61.6 46 52.2
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 2.2e-08 61.6 46 52.2
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 2.2e-08 61.6 46 54.3
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 2.2e-08 61.6 38 63.2
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 2.9e-08 61.2 46 56.5
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 2.9e-08 61.2 46 56.5
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 2.9e-08 61.2 46 54.3
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 2.9e-08 61.2 40 65.0
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 2.9e-08 61.2 50 56.0
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 3.7e-08 60.8 46 54.3
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 4.9e-08 60.5 46 52.2
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 4.9e-08 60.5 42 57.1
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 6.4e-08 60.1 39 61.5
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 6.4e-08 60.1 40 60.0
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 8.3e-08 59.7 46 50.0
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 8.3e-08 59.7 42 54.8
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 8.3e-08 59.7 46 52.2
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.1e-07 59.3 43 58.1
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 1.1e-07 59.3 39 61.5
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 1.1e-07 59.3 46 52.2
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 1.1e-07 59.3 46 58.7
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 1.4e-07 58.9 39 59.0
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 1.4e-07 58.9 45 51.1
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 1.4e-07 58.9 44 59.1
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 1.9e-07 58.5 39 56.4
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 2.4e-07 58.2 46 52.2
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 3.2e-07 57.8 50 52.0
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 4.1e-07 57.4 40 57.5
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 5.4e-07 57.0 46 52.2
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 9.2e-07 56.2 50 46.0
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 9.2e-07 56.2 40 57.5
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 1.2e-06 55.8 40 52.5
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 1.2e-06 55.8 40 52.5
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 2.1e-06 55.1 40 57.5
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 2.7e-06 54.7 40 55.0
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 2.7e-06 54.7 37 59.5
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 3.5e-06 54.3 48 45.8
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 3.5e-06 54.3 48 45.8


User provided reference genes

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