Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.3e-235 819.3 415 100.0
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 6.5e-150 534.6 368 73.6
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 2.8e-145 519.2 328 77.7
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 1.5e-141 506.9 331 74.0
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 1.4e-136 490.3 349 68.8
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 1.4e-136 490.3 365 66.6
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 3.5e-135 485.7 329 69.0
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 7.8e-135 484.6 355 67.6
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 7.8e-135 484.6 333 72.4
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.0e-134 484.2 367 66.5
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 2.3e-134 483.0 330 69.1
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 1.5e-133 480.3 328 70.1
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 1.9e-133 479.9 346 67.6
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 1.9e-133 479.9 364 66.5
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 2.5e-133 479.6 334 70.4
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 5.6e-133 478.4 343 69.1
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 2.1e-132 476.5 336 69.6
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 8.0e-132 474.6 340 66.8
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.0e-131 474.2 338 68.9
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 1.8e-131 473.4 344 66.0
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 1.8e-131 473.4 331 68.3
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 2.3e-131 473.0 335 68.7
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 3.1e-131 472.6 346 65.6
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 5.2e-131 471.9 342 64.6
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 5.2e-131 471.9 322 69.6
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 1.2e-130 470.7 359 64.3
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 1.2e-130 470.7 329 70.5
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.5e-130 470.3 329 67.5
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 1.5e-130 470.3 356 64.6
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 2.0e-130 469.9 360 65.8
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 4.4e-130 468.8 332 68.1
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 7.5e-130 468.0 350 66.3
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 9.8e-130 467.6 349 66.5
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.3e-129 467.2 330 67.6
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 4.9e-129 465.3 330 66.7
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 6.4e-129 464.9 335 67.8
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 8.3e-129 464.5 346 66.5
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 2.4e-128 463.0 347 66.3
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 2.4e-128 463.0 325 69.2
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 4.1e-128 462.2 337 66.5
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 4.1e-128 462.2 329 68.1
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 7.0e-128 461.5 337 66.5
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 7.0e-128 461.5 341 65.1
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 9.2e-128 461.1 341 65.1
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 9.2e-128 461.1 329 66.6
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 1.2e-127 460.7 337 66.2
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 6.0e-127 458.4 346 63.9
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 1.0e-126 457.6 336 67.3
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 1.7e-126 456.8 339 67.8
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 2.3e-126 456.4 339 67.6
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 3.9e-126 455.7 333 67.3
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 5.0e-126 455.3 355 63.7
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 6.6e-126 454.9 333 66.7
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.1e-125 454.1 333 66.7
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 1.1e-125 454.1 361 62.3
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 3.3e-125 452.6 332 65.7
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 7.3e-125 451.4 332 65.4
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 7.3e-125 451.4 346 64.5
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 9.5e-125 451.1 323 67.8
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 1.2e-124 450.7 333 67.0
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 3.6e-124 449.1 328 64.6
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 3.6e-124 449.1 318 70.1
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 6.2e-124 448.4 326 66.9
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 1.8e-123 446.8 362 62.2
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 2.3e-123 446.4 331 65.6
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 3.1e-123 446.0 323 67.2
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 5.2e-123 445.3 331 65.3
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 1.5e-122 443.7 314 68.8
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 5.8e-122 441.8 335 66.6
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 1.7e-121 440.3 334 64.4
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 3.7e-121 439.1 332 63.6
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 4.1e-120 435.6 314 66.2
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 6.6e-118 428.3 324 65.1
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 8.6e-118 427.9 330 64.2
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 8.6e-118 427.9 330 62.1
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 1.1e-117 427.6 318 66.0
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 1.5e-117 427.2 332 62.0
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 3.3e-117 426.0 346 60.7
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 7.3e-117 424.9 320 64.7
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 1.6e-116 423.7 338 61.2
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 2.1e-116 423.3 316 66.5
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 2.8e-116 422.9 428 52.1
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 3.1e-115 419.5 294 69.7
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 5.2e-115 418.7 358 57.5
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 1.5e-114 417.2 332 61.7
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 2.6e-114 416.4 321 59.8
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 2.6e-114 416.4 353 61.8
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 4.4e-114 415.6 328 61.9
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.7e-113 413.7 285 70.9
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 1.4e-112 410.6 347 59.7
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 4.1e-112 409.1 327 62.7
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 1.6e-111 407.1 333 60.4
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 2.1e-111 406.8 331 60.4
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 3.3e-109 399.4 269 72.1
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 9.6e-109 397.9 327 59.9
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 6.2e-108 395.2 292 64.4
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 6.2e-108 395.2 358 57.3
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 6.2e-108 395.2 347 57.9
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 3.1e-107 392.9 354 55.1
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 1.3e-105 387.5 320 59.4
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 2.2e-105 386.7 292 62.3
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 2.9e-105 386.3 285 63.5
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 2.9e-105 386.3 285 63.5
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 7.1e-104 381.7 340 57.4
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.2e-103 380.9 239 72.8
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 2.7e-103 379.8 292 65.4
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 3.0e-102 376.3 332 57.5
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 8.7e-102 374.8 259 68.0
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 4.3e-101 372.5 324 59.0
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 4.9e-97 359.0 333 58.6
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 1.1e-96 357.8 268 63.1
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 9.3e-96 354.8 193 96.4
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 3.5e-95 352.8 329 51.4
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 4.6e-95 352.4 366 51.9
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 2.3e-94 350.1 323 54.2
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 1.5e-93 347.4 297 56.6
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 4.8e-92 342.4 325 51.7
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 6.2e-92 342.0 356 50.6
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 5.3e-91 339.0 257 63.8
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 2.1e-87 327.0 338 48.2
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 3.9e-86 322.8 255 59.6
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 1.5e-82 310.8 205 71.7
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.9e-81 306.6 307 56.4
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 3.0e-78 296.6 198 71.2
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 2.7e-71 273.5 194 66.0
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 3.3e-69 266.5 203 63.1
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 4.3e-69 266.2 176 69.9
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 7.4e-69 265.4 245 52.7
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 1.8e-67 260.8 372 43.8
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 1.9e-64 250.8 292 41.8
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 2.3e-54 217.2 257 42.8
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 2.3e-54 217.2 160 63.1
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 1.5e-53 214.5 139 73.4
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 2.6e-53 213.8 279 39.8
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 7.0e-51 205.7 200 56.5
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 1.1e-48 198.4 286 36.7
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 9.4e-48 195.3 208 50.5
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 1.6e-47 194.5 208 50.5
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 7.0e-43 179.1 129 64.3
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 8.0e-39 165.6 155 53.5
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 3.4e-37 160.2 300 34.7
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 4.9e-28 129.8 80 78.8
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 7.0e-27 125.9 118 55.1
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 1.7e-20 104.8 120 50.0
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 1.8e-19 101.3 182 35.7
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.7e-18 97.4 46 100.0
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 4.6e-18 96.7 261 29.1
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.0e-17 95.5 89 55.1
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.0e-17 95.5 89 55.1
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 2.8e-15 87.4 113 48.7
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 7.5e-13 79.3 58 70.7
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 1.3e-09 68.6 49 71.4
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 1.7e-09 68.2 58 58.6
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 3.3e-08 63.9 71 46.5


User provided reference genes

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