Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08635 Nelumbo nucifera HOM05D001200 ORTHO05D009713 1.2e-47 193.0 105 100.0
BolSC45t60910H Brassica oleracea HOM05D001200 ORTHO05D009713 2.7e-23 112.1 78 84.6
Gohir.A09G017925 Gossypium hirsutum HOM05D001200 ORTHO05D009713 7.7e-23 110.5 72 90.3
HanXRQChr09g0244731 Helianthus annuus HOM05D001200 ORTHO05D009713 7.7e-23 110.5 72 91.7
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 1.3e-22 109.8 81 82.7
ATCG01060 Arabidopsis thaliana HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 1.7e-22 109.4 78 84.6
BolSC29t60505H Brassica oleracea HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
BolSC35t60703H Brassica oleracea HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
BolSC37t60792H Brassica oleracea HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
BolSC46t60959H Brassica oleracea HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
BolSC49t61142H Brassica oleracea HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
BraSC103t45428Z Brassica rapa HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
BraSC143t45661Z Brassica rapa HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
BraSC179t45775Z Brassica rapa HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
BraSC59t46550Z Brassica rapa HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
CAN.G1526.3 Capsicum annuum HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
CAN.G1526.8 Capsicum annuum HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
CAN.G278.4 Capsicum annuum HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
Migut.D01253 Erythranthe guttata HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
Gohir.1Z049631 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
Gohir.A02G134400 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
Gohir.A09G046200 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
Gohir.D06G133600 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 80.8
HanXRQChr00c0336g0573651 Helianthus annuus HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
HanXRQChr09g0246671 Helianthus annuus HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
Hma1.2p1_0382F.1_g140210 Hydrangea macrophylla HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
Nn064s42211 Nelumbo nucifera HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
PSO548G0036 Papaver somniferum HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
PGR111G0008 Punica granatum HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
RcHm_v2.0_Chr5g0017221 Rosa chinensis HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
RcHm_v2.0_Chr5g0043041 Rosa chinensis HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
RcHm_v2.0_CPg0502781 Rosa chinensis HOM05D001200 ORTHO05D009713 1.7e-22 109.4 78 84.6
CAN.G965.7 Capsicum annuum HOM05D001200 ORTHO05D009713 2.2e-22 109.0 78 84.6
BolC9t56926H Brassica oleracea HOM05D001200 ORTHO05D009713 2.9e-22 108.6 78 83.3
HanXRQChr02g0038661 Helianthus annuus HOM05D001200 ORTHO05D009713 2.9e-22 108.6 78 82.1
HanXRQChr17g0557761 Helianthus annuus HOM05D001200 ORTHO05D002731 2.9e-22 108.6 87 75.9
Glyma.18G155300 Glycine max HOM05D001200 ORTHO05D009713 5.0e-22 107.8 78 64.1
Lalb_Chr07g0191761 Lupinus albus HOM05D001200 ORTHO05D002731 5.0e-22 107.8 72 90.3
Nn1g00557 Nelumbo nucifera HOM05D001200 ORTHO05D009713 5.0e-22 107.8 78 82.1
Nn3g20217 Nelumbo nucifera HOM05D001200 ORTHO05D009713 6.5e-22 107.5 78 82.1
C04p22670 Brassica napus HOM05D001200 ORTHO05D009713 1.1e-21 106.7 78 82.1
arahy.Tifrunner.gnm1.ann1.USFH3V Arachis hypogaea HOM05D001200 ORTHO05D009713 1.5e-21 106.3 72 88.9
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.5e-21 106.3 78 83.3
DCAR_032537 Daucus carota HOM05D001200 ORTHO05D009713 1.9e-21 105.9 78 83.3
Oeu043656.1 Olea europaea HOM05D001200 ORTHO05D009713 7.2e-21 104.0 78 80.8
Gorai.009G377500 Gossypium raimondii HOM05D001200 ORTHO05D009713 9.4e-21 103.6 78 80.8
Sed0023939 Sechium edule HOM05D001200 ORTHO05D009713 1.2e-20 103.2 78 65.4
CARHR282430 Cardamine hirsuta HOM05D001200 ORTHO05D009713 2.1e-20 102.4 78 82.1
C09p40340 Brassica napus HOM05D001200 ORTHO05D009713 1.8e-19 99.4 76 80.3
Medtr4g050960 Medicago truncatula HOM05D001200 ORTHO05D009713 3.0e-19 98.6 78 80.8
Hund27630 Selenicereus undatus HOM05D001200 ORTHO05D009713 3.0e-19 98.6 72 86.1
Hund28597 Selenicereus undatus HOM05D001200 ORTHO05D009713 3.0e-19 98.6 72 86.1
Hund30643 Selenicereus undatus HOM05D001200 ORTHO05D009713 3.0e-19 98.6 72 86.1
HanXRQChr02g0038701 Helianthus annuus HOM05D001200 ORTHO05D009713 5.2e-19 97.8 70 87.1
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 5.2e-19 97.8 72 83.3
HanXRQChr00c0504g0575301 Helianthus annuus HOM05D001200 ORTHO05D009713 6.8e-19 97.4 73 83.6
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 8.8e-19 97.1 72 86.1
Medtr7g021720 Medicago truncatula HOM05D001200 ORTHO05D002731 8.8e-19 97.1 72 86.1
Hund27883 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.2e-18 96.7 72 84.7
Hund28330 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.2e-18 96.7 72 84.7
Hund28851 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.2e-18 96.7 72 84.7
Hund29433 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.2e-18 96.7 72 84.7
Hund30513 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.2e-18 96.7 72 84.7
Os09g0485201 Oryza sativa ssp. japonica HOM05D001200 ORTHO05D009713 4.4e-18 94.7 72 80.6
Potri.019G014344 Populus trichocarpa HOM05D001200 ORTHO05D009713 5.7e-18 94.4 78 59.0
Cpa.g.sc63.22 Carica papaya HOM05D001200 ORTHO05D009713 1.3e-17 93.2 78 78.2
BolSC29t60545H Brassica oleracea HOM05D001200 ORTHO05D009713 2.8e-17 92.0 47 87.2
BolSC35t60693H Brassica oleracea HOM05D001200 ORTHO05D009713 2.8e-17 92.0 47 87.2
BolSC44t60821H Brassica oleracea HOM05D001200 ORTHO05D009713 2.8e-17 92.0 47 87.2
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 2.8e-17 92.0 47 87.2
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 2.8e-17 92.0 47 87.2
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 2.8e-17 92.0 47 87.2
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 2.8e-17 92.0 47 87.2
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 2.8e-17 92.0 47 87.2
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 2.8e-17 92.0 47 87.2
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 2.8e-17 92.0 47 87.2
GSVIVG01034636001 Vitis vinifera HOM05D001200 ORTHO05D009713 1.4e-16 89.7 46 87.0
TPR.G17259 Trifolium pratense HOM05D000404 ORTHO05D009713 4.1e-16 88.2 47 85.1
BraSC25t45909Z Brassica rapa HOM05D001200 ORTHO05D009713 2.0e-15 85.9 67 79.1
HanXRQChr13g0388461 Helianthus annuus HOM05D001200 ORTHO05D009713 2.7e-15 85.5 47 83.0
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 2.7e-15 85.5 65 63.1
HanXRQChr03g0073101 Helianthus annuus HOM05D001200 ORTHO05D002731 3.5e-15 85.1 47 83.0
arahy.Tifrunner.gnm1.ann1.WH1VZM Arachis hypogaea HOM05D001200 ORTHO05D009713 5.9e-15 84.3 47 78.7
Sed0012820 Sechium edule HOM05D001200 ORTHO05D009713 1.1e-13 80.1 78 70.5
Hund24329 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.1e-13 80.1 47 76.6
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 1.5e-13 79.7 65 78.5
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 1.5e-13 79.7 65 78.5
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 1.5e-13 79.7 65 78.5
SMO086G0058 Selaginella moellendorffii HOM05D001200 ORTHO05D009713 1.6e-12 76.3 78 51.3
BolC2t10595H Brassica oleracea HOM05D001200 ORTHO05D009713 2.1e-12 75.9 38 84.2
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 1.0e-11 73.6 65 72.3
C09p40360 Brassica napus HOM05D001200 ORTHO05D009713 1.4e-11 73.2 78 51.3
BolC9t56924H Brassica oleracea HOM05D001200 ORTHO05D009713 1.4e-11 73.2 78 51.3
Gohir.A05G291020 Gossypium hirsutum HOM05D001163 ORTHO05D001769 3.0e-11 72.0 33 90.9
C07p33440 Brassica napus HOM05D001200 ORTHO05D009713 5.2e-11 71.2 78 51.3
C09p24630 Brassica napus HOM05D001200 ORTHO05D009713 5.2e-11 71.2 78 51.3
C09p40200 Brassica napus HOM05D001200 ORTHO05D009713 5.2e-11 71.2 78 51.3
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 1.7e-09 66.2 43 72.1
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 2.2e-09 65.9 36 83.3
TPR.G30364 Trifolium pratense HOM05D001200 ORTHO05D009713 2.8e-09 65.5 53 62.3
HanXRQChr08g0211961 Helianthus annuus HOM05D001200 ORTHO05D002731 6.3e-09 64.3 29 89.7
HanXRQChr14g0428461 Helianthus annuus HOM05D001200 ORTHO05D009713 1.0e-06 57.0 53 52.8
AL9U11952 Arabidopsis lyrata HOM05D001200 ORTHO05D009713 1.7e-06 56.2 51 54.9
HanXRQChr08g0213671 Helianthus annuus HOM05D001200 ORTHO05D009713 2.3e-06 55.8 51 52.9
Gohir.D08G077250 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.9e-06 55.5 51 52.9
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 3.8e-06 55.1 30 83.3
Gorai.004G082100 Gossypium raimondii HOM05D001200 ORTHO05D009713 5.0e-06 54.7 51 52.9


User provided reference genes

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