Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 3.0e-108 395.2 200 100.0
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 2.5e-78 295.8 200 71.0
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 4.4e-75 285.0 200 68.5
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 9.1e-73 277.3 193 68.4
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 1.9e-70 269.6 200 65.0
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 7.2e-70 267.7 200 66.0
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 3.6e-69 265.4 198 62.6
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 5.2e-68 261.5 200 61.5
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 5.2e-68 261.5 199 63.8
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 5.2e-68 261.5 200 65.0
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.0e-67 259.6 195 65.1
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.3e-66 256.9 188 65.4
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 1.7e-66 256.5 198 61.1
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.7e-66 255.4 200 63.5
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 3.7e-66 255.4 198 61.1
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.4e-65 252.7 188 64.9
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.1e-65 252.3 198 60.1
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 4.1e-65 251.9 200 61.0
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.2e-64 250.4 198 62.1
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 2.0e-64 249.6 194 63.4
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.6e-64 249.2 188 63.3
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.5e-64 248.4 200 61.5
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 5.9e-64 248.1 196 60.7
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 5.9e-64 248.1 200 60.0
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 7.7e-64 247.7 200 60.0
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 1.3e-63 246.9 200 62.0
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.7e-63 246.5 200 60.5
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.7e-63 246.5 193 61.1
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.7e-63 246.5 200 61.0
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 2.2e-63 246.1 193 60.1
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 5.0e-63 245.0 187 62.0
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 8.5e-63 244.2 193 59.6
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 8.5e-63 244.2 200 60.0
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.5e-62 243.4 191 62.3
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 1.5e-62 243.4 196 60.7
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 1.5e-62 243.4 196 60.7
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 4.2e-62 241.9 198 59.6
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 5.5e-62 241.5 196 60.2
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 5.5e-62 241.5 198 58.6
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 9.4e-62 240.7 194 61.9
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.2e-61 240.4 200 59.5
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 1.6e-61 240.0 194 60.8
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.6e-61 240.0 193 61.7
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.1e-61 239.6 198 60.1
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 3.6e-61 238.8 200 58.0
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 4.7e-61 238.4 200 61.0
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 6.1e-61 238.0 182 61.0
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 6.1e-61 238.0 190 58.9
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 8.0e-61 237.7 187 58.8
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 1.0e-60 237.3 200 59.5
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 3.0e-60 235.7 192 58.3
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 4.0e-60 235.3 196 56.1
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 5.2e-60 235.0 198 58.1
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 6.7e-60 234.6 196 56.1
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 6.7e-60 234.6 198 60.1
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.2e-59 233.8 181 60.2
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 1.5e-59 233.4 247 49.8
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 2.0e-59 233.0 198 57.1
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 2.0e-59 233.0 196 58.7
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 2.0e-59 233.0 194 57.2
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 3.3e-59 232.3 194 59.8
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 4.4e-59 231.9 204 59.8
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 4.4e-59 231.9 194 60.3
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 4.4e-59 231.9 190 58.9
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 9.7e-59 230.7 192 56.8
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 1.7e-58 229.9 194 58.2
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.8e-58 229.2 190 56.3
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 2.8e-58 229.2 191 58.1
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 4.8e-58 228.4 181 63.5
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 4.8e-58 228.4 195 57.9
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.4e-57 226.9 191 57.6
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.4e-57 226.1 200 57.0
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.1e-57 225.7 197 55.3
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 4.1e-57 225.3 198 56.1
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 5.3e-57 224.9 198 56.1
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 5.3e-57 224.9 198 57.1
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 7.0e-57 224.6 203 57.1
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 9.1e-57 224.2 193 58.0
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 1.2e-56 223.8 199 55.8
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.2e-56 223.8 193 58.0
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 1.6e-56 223.4 190 56.3
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.6e-56 223.4 194 55.2
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 2.0e-56 223.0 193 57.5
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.7e-56 222.6 190 54.2
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 2.7e-56 222.6 193 57.0
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.5e-56 222.2 192 56.2
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 4.5e-56 221.9 194 54.6
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 4.5e-56 221.9 188 59.0
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.0e-55 220.7 193 57.0
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 1.7e-55 219.9 194 54.6
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 2.2e-55 219.5 200 53.5
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 2.9e-55 219.2 191 58.6
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 5.0e-55 218.4 196 55.1
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 6.5e-55 218.0 194 53.6
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 8.5e-55 217.6 196 56.1
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 1.5e-54 216.9 191 57.6
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.5e-54 216.9 194 56.2
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 1.9e-54 216.5 191 57.6
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.9e-54 216.5 198 54.5
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 2.5e-54 216.1 191 57.1
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.5e-54 216.1 191 57.1
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 2.7e-53 212.6 191 57.6
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 1.0e-52 210.7 194 56.7
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 1.4e-52 210.3 191 55.0
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 1.4e-52 210.3 195 53.3
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 5.2e-52 208.4 194 52.6
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 5.2e-52 208.4 190 55.3
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 1.2e-51 207.2 191 55.5
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 2.0e-51 206.5 194 52.1
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.0e-51 206.5 198 54.0
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 2.6e-51 206.1 194 52.6
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 7.5e-51 204.5 192 53.6
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 9.8e-51 204.1 195 49.2
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 9.8e-51 204.1 192 54.2
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 1.7e-50 203.4 178 56.7
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 2.2e-50 203.0 149 64.4
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 2.2e-50 203.0 197 50.8
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 2.8e-50 202.6 195 50.8
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.1e-49 200.7 191 53.4
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 1.8e-49 199.9 195 49.2
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 4.1e-49 198.7 189 48.7
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.1e-49 198.7 201 51.7
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 7.0e-49 198.0 191 52.9
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 7.0e-49 198.0 178 57.3
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 9.1e-49 197.6 190 54.2
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.2e-48 197.2 193 52.3
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.2e-48 197.2 174 55.2
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 1.6e-48 196.8 189 48.1
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 1.6e-48 196.8 189 49.7
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.6e-48 196.8 188 52.1
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 2.7e-48 196.1 189 49.2
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.5e-48 195.7 149 60.4
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 1.0e-47 194.1 194 49.5
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.3e-47 193.0 194 48.5
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 3.8e-47 192.2 200 49.5
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.1e-46 190.7 169 58.0
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 3.3e-46 189.1 188 51.6
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.2e-45 187.2 196 48.0
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.6e-45 186.8 195 49.7
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 2.8e-45 186.0 189 50.3
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.7e-45 185.3 127 68.5
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 8.0e-45 184.5 189 50.3
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.4e-44 183.7 171 53.2
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.4e-44 183.7 195 48.2
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 5.7e-43 178.3 142 58.5
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 1.4e-41 173.7 189 45.0
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.2e-40 170.6 165 50.9
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 1.0e-39 167.5 164 53.7
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 1.3e-39 167.2 195 45.1
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 3.8e-39 165.6 195 45.1
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 5.0e-39 165.2 193 47.2
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 6.6e-39 164.9 156 53.8
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.5e-38 163.7 146 53.4
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 5.6e-38 161.8 197 45.2
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.2e-37 160.6 188 45.2
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.0e-36 156.0 172 45.9
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.2e-35 154.1 193 44.0
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 2.6e-35 152.9 194 45.4
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.4e-35 152.5 130 56.9
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 2.2e-34 149.8 126 57.9
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 4.9e-34 148.7 154 46.8
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.9e-34 148.7 153 51.0
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.3e-30 135.6 190 43.7
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 2.6e-27 126.3 113 54.0
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 6.2e-21 105.1 108 50.0
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.6e-19 99.8 187 32.6
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.7e-18 97.1 186 36.6
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 6.0e-16 88.6 198 31.3
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 1.3e-15 87.4 163 33.7
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 1.7e-15 87.0 202 28.2
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.0e-15 86.3 105 44.8
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 1.6e-13 80.5 201 28.4
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 1.6e-13 80.5 84 51.2
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.2e-11 74.3 73 47.9
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 2.2e-10 70.1 157 31.2
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 4.1e-09 65.9 76 42.1
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 6.6e-07 58.5 91 41.8
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 1.5e-06 57.4 81 44.4


User provided reference genes

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