Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.9e-64 247.7 128 100.0
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.5e-60 236.1 124 98.4
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 1.9e-39 166.0 123 66.7
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 4.1e-34 148.3 117 62.4
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 1.2e-33 146.7 120 60.8
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 5.9e-33 144.4 116 62.9
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 5.9e-33 144.4 116 62.1
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 2.2e-32 142.5 116 58.6
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 1.9e-31 139.4 123 62.6
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.2e-31 138.7 117 59.0
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.2e-30 136.7 121 57.0
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 1.6e-30 136.3 112 58.9
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.0e-29 133.7 117 59.0
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 1.4e-29 133.3 116 57.8
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.8e-29 132.9 117 57.3
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 3.9e-29 131.7 112 59.8
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 6.7e-29 131.0 118 58.5
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 6.7e-29 131.0 117 56.4
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 8.8e-29 130.6 119 57.1
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 1.5e-28 129.8 121 55.4
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.0e-28 129.4 119 56.3
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.0e-28 129.4 119 56.3
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.6e-28 129.0 119 56.3
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 2.6e-28 129.0 114 57.0
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 3.3e-28 128.6 116 56.9
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 4.4e-28 128.3 121 53.7
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.3e-27 126.7 121 48.8
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 1.7e-27 126.3 121 52.9
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.7e-27 126.3 121 48.8
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 2.2e-27 125.9 112 55.4
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 2.8e-27 125.6 121 52.9
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 2.8e-27 125.6 112 58.0
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 3.7e-27 125.2 112 55.4
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 3.7e-27 125.2 118 57.6
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.8e-27 124.8 120 55.0
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.8e-27 124.8 120 55.0
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 4.8e-27 124.8 116 54.3
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 4.8e-27 124.8 121 49.6
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 6.3e-27 124.4 121 52.1
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 6.3e-27 124.4 121 52.9
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 6.3e-27 124.4 121 47.9
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 6.3e-27 124.4 121 47.9
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 8.2e-27 124.0 121 47.9
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 8.2e-27 124.0 119 51.3
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 1.8e-26 122.9 111 53.2
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 3.1e-26 122.1 112 54.5
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 3.1e-26 122.1 121 47.1
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 3.1e-26 122.1 121 50.4
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 4.1e-26 121.7 117 57.3
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 5.3e-26 121.3 121 51.2
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 5.3e-26 121.3 112 53.6
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 1.2e-25 120.2 121 49.6
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.2e-25 120.2 112 53.6
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 2.0e-25 119.4 112 52.7
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 3.5e-25 118.6 109 52.3
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 4.5e-25 118.2 117 55.6
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 4.5e-25 118.2 115 52.2
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 4.5e-25 118.2 116 51.7
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 4.5e-25 118.2 113 51.3
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 4.5e-25 118.2 109 56.9
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 5.9e-25 117.9 120 52.5
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 5.9e-25 117.9 116 52.6
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 5.9e-25 117.9 121 45.5
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 7.7e-25 117.5 115 52.2
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 7.7e-25 117.5 115 52.2
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 7.7e-25 117.5 112 54.5
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 7.7e-25 117.5 115 54.8
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 1.0e-24 117.1 121 49.6
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 1.0e-24 117.1 111 54.1
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 1.7e-24 116.3 119 50.4
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 6.5e-24 114.4 109 50.5
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 8.5e-24 114.0 115 50.4
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.1e-23 113.6 115 51.3
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 1.5e-23 113.2 116 49.1
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.5e-23 113.2 107 52.3
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 1.9e-23 112.8 113 50.4
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 2.5e-23 112.5 136 50.0
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 2.5e-23 112.5 109 50.5
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 3.2e-23 112.1 124 45.2
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 3.2e-23 112.1 119 49.6
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 3.2e-23 112.1 119 49.6
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 5.5e-23 111.3 115 48.7
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 7.2e-23 110.9 116 45.7
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 1.2e-22 110.2 118 46.6
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 1.6e-22 109.8 112 49.1
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 6.1e-22 107.8 117 46.2
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 8.0e-22 107.5 112 46.4
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 1.0e-21 107.1 113 46.9
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 1.4e-21 106.7 117 46.2
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.4e-21 106.7 120 45.8
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 2.3e-21 105.9 118 47.5
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 2.3e-21 105.9 112 50.9
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 2.6e-20 102.4 103 47.6
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 2.6e-20 102.4 112 46.4
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 4.4e-20 101.7 120 43.3
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 5.7e-20 101.3 118 43.2
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 9.7e-20 100.5 112 48.2
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.2e-19 99.4 112 47.3
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 2.2e-19 99.4 121 41.3
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 2.2e-19 99.4 120 44.2
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 4.8e-19 98.2 117 43.6
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.4e-18 96.7 112 43.8
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.4e-18 96.7 115 43.5
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 2.4e-18 95.9 117 42.7
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 2.4e-18 95.9 115 44.3
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 3.1e-18 95.5 121 42.1
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 3.1e-18 95.5 111 42.3
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 5.3e-18 94.7 110 42.7
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 5.3e-18 94.7 115 42.6
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 7.0e-18 94.4 117 41.9
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 3.5e-17 92.0 109 49.5
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 4.5e-17 91.7 110 40.9
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 5.9e-17 91.3 150 41.3
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 2.2e-16 89.4 109 41.3
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 2.9e-16 89.0 114 40.4
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.9e-16 89.0 79 57.0
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 6.5e-16 87.8 110 41.8
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 6.5e-16 87.8 110 41.8
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 7.2e-15 84.3 112 42.0
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.6e-14 83.2 70 60.0
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 2.1e-14 82.8 112 42.0
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 8.0e-14 80.9 117 38.5
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 2.3e-13 79.3 118 38.1
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 1.5e-12 76.6 117 35.9
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 4.8e-11 71.6 74 47.3
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.8e-10 69.7 60 56.7
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.4e-10 68.2 54 59.3
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 1.2e-09 67.0 117 34.2
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 1.2e-09 67.0 117 34.2
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 1.2e-09 67.0 118 33.1
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 8.5e-08 60.8 118 33.1
SEGI_20846 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.5e-07 60.1 82 40.2
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 3.2e-07 58.9 117 30.8
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.2e-06 57.0 56 51.8
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 1.6e-06 56.6 117 35.9
SEGI_10534 Sequoiadendron giganteum HOM05D014588 ORTHO05D004021 3.6e-06 55.5 80 37.5
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 4.7e-06 55.1 117 29.9
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 4.7e-06 55.1 117 29.9


User provided reference genes

Program Settings