Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08360 Nelumbo nucifera HOM05D003767 ORTHO05D004507 7.8e-32 139.8 69 100.0
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 5.4e-17 90.5 70 67.1
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 4.3e-14 80.9 70 61.4
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 5.6e-14 80.5 61 65.6
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.1e-13 78.6 63 65.1
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 5.3e-12 73.9 67 56.7
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.2e-11 72.8 70 55.7
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 3.4e-11 71.2 63 60.3
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 5.8e-11 70.5 67 52.2
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.3e-10 69.3 73 53.4
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 1.7e-10 68.9 73 53.4
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 1.7e-10 68.9 69 50.7
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.9e-10 68.2 69 55.1
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 3.8e-10 67.8 63 58.7
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.9e-10 67.4 61 57.4
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 4.9e-10 67.4 64 56.2
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.4e-09 65.9 61 57.4
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 1.9e-09 65.5 67 50.7
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 1.9e-09 65.5 63 49.2
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 4.2e-09 64.3 70 52.9
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 4.2e-09 64.3 65 55.4
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 4.2e-09 64.3 66 54.5
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 5.4e-09 63.9 58 53.4
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 7.1e-09 63.5 69 52.2
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 7.1e-09 63.5 69 52.2
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 9.3e-09 63.2 54 57.4
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 9.3e-09 63.2 63 52.4
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 9.3e-09 63.2 60 55.0
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 9.3e-09 63.2 68 54.4
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.6e-08 62.4 54 55.6
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 2.1e-08 62.0 54 55.6
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 4.6e-08 60.8 68 50.0
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 4.6e-08 60.8 70 50.0
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 7.9e-08 60.1 59 47.5
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 1.0e-07 59.7 66 50.0
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.0e-07 59.7 66 50.0
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.3e-07 59.3 71 49.3
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.8e-07 58.9 68 48.5
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.8e-07 58.9 63 49.2
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 2.3e-07 58.5 64 50.0
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 2.3e-07 58.5 62 50.0
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 3.0e-07 58.2 62 50.0
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 3.9e-07 57.8 65 49.2
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 3.9e-07 57.8 57 54.4
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 3.9e-07 57.8 68 50.0
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 3.9e-07 57.8 53 58.5
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 5.1e-07 57.4 52 55.8
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 5.1e-07 57.4 73 43.8
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 6.7e-07 57.0 67 41.8
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.7e-07 56.6 62 48.4
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 1.1e-06 56.2 62 46.8
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.1e-06 56.2 62 46.8
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.1e-06 56.2 62 46.8
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.1e-06 56.2 62 46.8
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.1e-06 56.2 62 46.8
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 1.1e-06 56.2 33 69.7
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 1.1e-06 56.2 61 44.3
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.5e-06 55.8 67 50.7
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 3.3e-06 54.7 54 50.0
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 3.3e-06 54.7 30 76.7
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 4.3e-06 54.3 54 48.1
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 5.6e-06 53.9 57 49.1
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 5.6e-06 53.9 70 41.4
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 5.6e-06 53.9 54 50.0
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 5.6e-06 53.9 64 46.9
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 7.4e-06 53.5 32 71.9
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 7.4e-06 53.5 62 45.2
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 7.4e-06 53.5 33 66.7
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 9.6e-06 53.1 49 55.1


User provided reference genes

Program Settings