Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.1e-54 215.3 101 100.0
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.9e-53 210.3 101 98.0
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.9e-53 210.3 101 98.0
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 1.9e-47 192.2 94 96.8
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 1.9e-47 192.2 94 96.8
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 1.9e-47 192.2 94 96.8
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 1.9e-47 192.2 94 96.8
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 1.9e-47 192.2 94 96.8
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 1.9e-47 192.2 94 96.8
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 1.9e-47 192.2 94 96.8
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 3.3e-47 191.4 94 95.7
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 3.3e-47 191.4 94 95.7
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 5.6e-47 190.7 94 95.7
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 7.4e-47 190.3 94 95.7
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 1.6e-46 189.1 94 95.7
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 1.6e-46 189.1 94 95.7
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 2.1e-46 188.7 94 94.7
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 2.1e-46 188.7 94 94.7
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 2.1e-46 188.7 94 94.7
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 2.1e-46 188.7 93 95.7
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 2.8e-46 188.3 101 89.1
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 4.8e-46 187.6 99 90.9
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 6.2e-46 187.2 94 95.7
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 6.2e-46 187.2 94 95.7
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.4e-45 186.0 94 93.6
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.4e-45 186.0 94 93.6
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 1.4e-45 186.0 94 93.6
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 1.4e-45 186.0 94 93.6
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 1.4e-45 186.0 94 93.6
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 1.4e-45 186.0 94 93.6
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 1.4e-45 186.0 94 94.7
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.4e-45 185.3 97 88.7
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 3.1e-45 184.9 94 93.6
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 3.1e-45 184.9 94 93.6
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 3.1e-45 184.9 94 93.6
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 5.3e-45 184.1 94 92.6
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 5.3e-45 184.1 94 93.6
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 1.5e-44 182.6 94 93.6
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 1.5e-44 182.6 94 93.6
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.0e-44 182.2 94 92.6
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-44 182.2 94 92.6
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-44 182.2 94 92.6
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-44 182.2 94 92.6
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-44 182.2 94 92.6
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-44 182.2 94 92.6
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-44 182.2 94 92.6
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-44 182.2 94 92.6
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-44 182.2 94 92.6
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-44 182.2 94 92.6
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-44 182.2 94 92.6
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-44 182.2 94 92.6
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.8e-44 180.6 94 91.5
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 7.6e-44 180.3 94 92.6
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 7.6e-44 180.3 94 91.5
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.7e-43 179.1 94 90.4
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.7e-43 179.1 99 86.9
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.4e-42 176.0 94 90.4
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 1.9e-42 175.6 94 89.4
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 1.9e-42 175.6 94 89.4
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 1.9e-42 175.6 94 89.4
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.5e-42 174.1 94 87.2
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 9.3e-42 173.3 94 88.3
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 1.2e-41 172.9 94 88.3
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 3.0e-40 168.3 94 88.3
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 8.7e-40 166.8 94 85.1
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.1e-39 166.4 94 85.1
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.5e-39 166.0 82 93.9
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 4.3e-39 164.5 94 85.1
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 4.3e-39 164.5 81 95.1
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 5.7e-39 164.1 94 86.2
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 2.1e-38 162.2 94 83.0
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 2.8e-38 161.8 83 91.6
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.8e-38 161.8 86 89.5
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 8.2e-38 160.2 84 88.1
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 1.1e-37 159.8 94 85.1
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.8e-37 159.1 81 92.6
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 1.8e-37 159.1 82 91.5
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 3.1e-37 158.3 82 86.6
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 5.3e-37 157.5 83 89.2
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 9.0e-37 156.8 94 81.9
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 1.2e-36 156.4 86 84.9
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 3.4e-36 154.8 86 84.9
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 3.4e-36 154.8 84 85.7
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 7.6e-36 153.7 79 89.9
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 1.7e-35 152.5 94 81.9
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 2.2e-35 152.1 77 92.2
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 5.0e-35 151.0 94 77.7
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.1e-33 145.6 79 86.1
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.0e-32 143.3 79 83.5
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-32 142.9 74 90.5
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 3.9e-32 141.4 82 82.9
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 1.5e-31 139.4 72 90.3
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.9e-31 139.0 72 88.9
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 7.4e-31 137.1 94 76.6
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.6e-30 136.0 94 72.3
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 2.2e-30 135.6 69 92.8
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 2.2e-30 135.6 69 92.8
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 2.4e-29 132.1 86 72.1
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.2e-28 129.8 102 66.7
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.2e-28 129.8 102 66.7
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.2e-28 129.8 102 66.7
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.3e-27 126.3 63 93.7
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 8.5e-27 123.6 67 89.6
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 1.1e-26 123.2 66 89.4
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 2.5e-26 122.1 73 80.8
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 1.4e-24 116.3 89 69.7
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 1.8e-24 115.9 63 85.7
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 3.0e-24 115.2 61 88.5
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 2.0e-23 112.5 53 96.2
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.3e-23 111.7 59 89.8
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 4.3e-23 111.3 83 67.5
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 5.7e-23 110.9 60 83.3
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.8e-21 105.9 49 100.0
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 1.8e-21 105.9 62 82.3
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 6.9e-21 104.0 61 82.0
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-19 99.8 62 80.6
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 6.5e-19 97.4 44 100.0
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 3.2e-18 95.1 56 80.4
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 3.2e-18 95.1 44 97.7
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 4.2e-18 94.7 52 82.7
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 7.2e-18 94.0 51 84.3
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 3.6e-17 91.7 50 82.0
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 3.6e-17 91.7 61 73.8
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 6.1e-17 90.9 43 95.3
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 7.9e-17 90.5 44 95.5
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 1.8e-16 89.4 77 62.3
EL10Ac9g22727 Beta vulgaris HOM05D000540 ORTHO05D008899 3.9e-16 88.2 48 85.4
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 1.1e-15 86.7 70 64.3
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 7.4e-15 84.0 41 95.1
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 4.8e-14 81.3 84 52.4
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.3e-14 80.9 37 94.6
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-13 79.7 42 88.1
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 7.7e-12 73.9 37 91.9
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 1.0e-11 73.6 42 81.0
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 1.9e-10 69.3 32 96.9
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 2.7e-09 65.5 30 96.7
SMO086G0037 Selaginella moellendorffii HOM05D000540 ORTHO05D008899 1.0e-08 63.5 89 40.4
Cc06_g21660 Coffea canephora HOM05D000540 ORTHO05D008899 4.4e-07 58.2 40 60.0


User provided reference genes

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