Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.4e-37 159.1 75 100.0
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 1.5e-28 129.0 75 80.0
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 5.0e-24 114.0 66 81.8
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.8e-21 105.5 49 100.0
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.7e-20 100.5 49 95.9
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.7e-20 100.5 49 95.9
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 5.7e-20 100.5 49 95.9
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 5.7e-20 100.5 49 95.9
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 2.8e-19 98.2 49 93.9
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 2.8e-19 98.2 49 93.9
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 2.8e-19 98.2 49 93.9
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 2.8e-19 98.2 49 93.9
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 2.8e-19 98.2 49 93.9
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 2.8e-19 98.2 49 93.9
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 2.8e-19 98.2 49 93.9
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 2.8e-19 98.2 49 93.9
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 2.8e-19 98.2 49 93.9
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 2.8e-19 98.2 49 93.9
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 2.8e-19 98.2 49 93.9
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 2.8e-19 98.2 49 93.9
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 2.8e-19 98.2 49 93.9
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 2.8e-19 98.2 49 93.9
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 2.8e-19 98.2 49 93.9
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 2.8e-19 98.2 49 93.9
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.7e-19 97.8 49 93.9
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.7e-19 97.8 49 93.9
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.7e-19 97.8 49 93.9
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 3.7e-19 97.8 49 93.9
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 3.7e-19 97.8 49 93.9
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 3.7e-19 97.8 49 93.9
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 3.7e-19 97.8 49 93.9
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 3.7e-19 97.8 49 93.9
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 4.8e-19 97.4 49 91.8
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 4.8e-19 97.4 49 91.8
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 6.3e-19 97.1 49 91.8
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 6.3e-19 97.1 49 91.8
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 6.3e-19 97.1 49 91.8
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 6.3e-19 97.1 49 91.8
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 6.3e-19 97.1 49 91.8
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 6.3e-19 97.1 49 91.8
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 6.3e-19 97.1 49 91.8
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 6.3e-19 97.1 49 91.8
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 6.3e-19 97.1 49 91.8
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 6.3e-19 97.1 49 91.8
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 6.3e-19 97.1 49 91.8
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 6.3e-19 97.1 49 91.8
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 6.3e-19 97.1 49 91.8
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 6.3e-19 97.1 49 91.8
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 6.3e-19 97.1 49 91.8
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 6.3e-19 97.1 49 91.8
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 6.3e-19 97.1 46 97.8
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 8.2e-19 96.7 49 91.8
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.4e-18 95.9 49 91.8
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 1.8e-18 95.5 49 89.8
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 2.4e-18 95.1 49 89.8
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.1e-18 94.7 49 87.8
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 3.1e-18 94.7 46 95.7
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 4.1e-18 94.4 47 93.6
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 4.1e-18 94.4 47 93.6
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 4.1e-18 94.4 47 93.6
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 4.1e-18 94.4 47 93.6
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.1e-18 94.4 49 89.8
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 1.2e-17 92.8 49 89.8
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.2e-17 92.8 49 85.7
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 1.2e-17 92.8 47 93.6
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 1.2e-17 92.8 47 93.6
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 2.0e-17 92.0 47 91.5
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 2.0e-17 92.0 49 87.8
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 2.0e-17 92.0 49 89.8
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 2.6e-17 91.7 49 83.7
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 2.6e-17 91.7 49 89.8
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 2.6e-17 91.7 49 89.8
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 2.6e-17 91.7 49 89.8
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 3.5e-17 91.3 49 85.7
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 3.5e-17 91.3 49 87.8
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.9e-17 90.5 49 87.8
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.9e-17 90.5 49 87.8
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.9e-17 90.5 49 87.8
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 5.9e-17 90.5 49 85.7
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 5.9e-17 90.5 44 95.5
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 7.7e-17 90.1 49 87.8
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.3e-16 89.4 49 87.8
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.7e-16 89.0 49 85.7
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.9e-16 88.2 49 85.7
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 3.8e-16 87.8 49 85.7
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.8e-16 87.8 48 85.4
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 8.5e-16 86.7 45 91.1
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.5e-15 85.9 46 84.8
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 4.2e-15 84.3 44 88.6
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 5.5e-15 84.0 49 77.6
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 7.2e-15 83.6 41 95.1
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.2e-15 83.6 49 79.6
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 7.2e-15 83.6 49 81.6
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 9.4e-15 83.2 49 79.6
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 1.2e-14 82.8 49 81.6
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.2e-14 82.8 42 92.9
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.6e-14 81.3 49 79.6
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 8.0e-14 80.1 49 79.6
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 1.0e-13 79.7 49 77.6
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 5.2e-13 77.4 49 79.6
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 2.0e-12 75.5 41 85.4
EL10Ac9g22727 Beta vulgaris HOM05D000540 ORTHO05D008899 3.4e-12 74.7 41 85.4
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 7.5e-12 73.6 41 82.9
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 2.2e-11 72.0 50 72.0
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 2.8e-11 71.6 42 78.6
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.4e-10 69.3 49 71.4
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 2.4e-10 68.6 35 91.4
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 1.6e-09 65.9 34 85.3
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 3.5e-09 64.7 34 82.4
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 4.5e-09 64.3 32 90.6
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 5.0e-08 60.8 34 76.5
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 6.5e-08 60.5 48 68.8
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 1.1e-07 59.7 36 77.8
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.5e-07 59.3 41 61.0
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 3.6e-06 54.7 29 86.2


User provided reference genes

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