Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08151 Nelumbo nucifera HOM05D000324 ORTHO05D004875 2.0e-68 262.3 134 100.0
TAR362G1108 Trochodendron aralioides HOM05D000324 ORTHO05D004875 9.8e-55 216.9 129 84.5
Haze_11666 Corylus avellana HOM05D000001 ORTHO05D004875 1.6e-52 209.5 129 79.1
MBI07_g15662_MAGBIO Magnolia biondii HOM05D000324 ORTHO05D004875 1.6e-52 209.5 129 80.6
Cfa008641 Carpinus fangiana HOM05D000324 ORTHO05D004875 2.0e-52 209.1 129 80.6
AUR62018517 Chenopodium quinoa HOM05D000324 ORTHO05D004875 2.7e-52 208.8 129 76.7
Manes.01G056450 Manihot esculenta HOM05D000324 ORTHO05D004875 4.5e-52 208.0 129 77.5
Dinv18404 Davidia involucrata HOM05D000324 ORTHO05D004875 5.9e-52 207.6 129 80.6
GSVIVG01022434001 Vitis vinifera HOM05D000324 ORTHO05D004875 1.0e-51 206.8 129 78.3
Manes.05G201400 Manihot esculenta HOM05D000324 ORTHO05D004875 3.8e-51 204.9 129 77.5
CiPaw.01G115100 Carya illinoinensis HOM05D000324 ORTHO05D004875 5.0e-51 204.5 129 76.0
EL10Ac3g07424 Beta vulgaris HOM05D000324 ORTHO05D004875 6.5e-51 204.1 129 76.0
AUR62020902 Chenopodium quinoa HOM05D000324 ORTHO05D004875 8.5e-51 203.8 129 75.2
MD04G1018900 Malus domestica HOM05D000324 ORTHO05D004875 1.9e-50 202.6 129 76.7
Ah.04g149530 Amaranthus hybridus HOM05D000020 ORTHO05D004875 2.5e-50 202.2 129 75.2
PSO017G1881 Papaver somniferum HOM05D000324 ORTHO05D004875 3.2e-50 201.8 129 77.5
Atru.chr4.1549 Acer truncatum HOM05D000324 ORTHO05D004875 4.2e-50 201.4 129 76.0
CAN.G1155.12 Capsicum annuum HOM05D000324 ORTHO05D004875 5.5e-50 201.1 129 73.6
Sc13g0000480 Simmondsia chinensis HOM05D000324 ORTHO05D004875 5.5e-50 201.1 129 74.4
COL.COLO4_05432 Corchorus olitorius HOM05D000324 ORTHO05D004875 7.2e-50 200.7 129 76.0
PSO063G7360 Papaver somniferum HOM05D000324 ORTHO05D004875 7.2e-50 200.7 129 77.5
Potri.017G060100 Populus trichocarpa HOM05D000324 ORTHO05D004875 7.2e-50 200.7 129 75.2
Prupe.1G167500 Prunus persica HOM05D000324 ORTHO05D004875 9.4e-50 200.3 129 75.2
TWI09G0239 Tripterygium wilfordii HOM05D000324 ORTHO05D004875 9.4e-50 200.3 129 76.7
CSS0006110 Camellia sinensis var. sinensis HOM05D000324 ORTHO05D004875 1.2e-49 199.9 129 78.3
Sabra17G0053900 Salix brachista HOM05D000324 ORTHO05D004875 1.6e-49 199.5 129 75.2
Eucgr.H02649 Eucalyptus grandis HOM05D000324 ORTHO05D004875 2.1e-49 199.1 129 76.0
QL06p026611 Quercus lobata HOM05D000324 ORTHO05D004875 2.7e-49 198.7 129 75.2
Hund24436 Selenicereus undatus HOM05D000324 ORTHO05D004875 2.7e-49 198.7 129 74.4
Ciclev10004427m.g Citrus clementina HOM05D000324 ORTHO05D004875 3.6e-49 198.4 129 77.5
PGSC0003DMG400020593 Solanum tuberosum HOM05D000324 ORTHO05D004875 3.6e-49 198.4 129 72.1
FAN12G0788 Fragaria x ananassa HOM05D000324 ORTHO05D004875 4.7e-49 198.0 133 75.2
Actinidia20854 Actinidia chinensis HOM05D000324 ORTHO05D004875 6.1e-49 197.6 129 74.4
RcHm_v2.0_Chr4g0412911 Rosa chinensis HOM05D000324 ORTHO05D004875 6.1e-49 197.6 129 76.0
Cc03_g09380 Coffea canephora HOM05D000324 ORTHO05D004875 8.0e-49 197.2 129 75.2
Duzib268G1033 Durio zibethinus HOM05D000324 ORTHO05D004875 8.0e-49 197.2 129 72.9
RcHm_v2.0_Chr4g0413231 Rosa chinensis HOM05D000324 ORTHO05D004875 8.0e-49 197.2 129 76.7
Gohir.D05G325350 Gossypium hirsutum HOM05D000324 ORTHO05D004875 1.0e-48 196.8 129 72.9
Lj6g0003386 Lotus japonicus HOM05D000324 ORTHO05D004875 1.0e-48 196.8 129 70.5
Potri.001G321800 Populus trichocarpa HOM05D000324 ORTHO05D004875 1.4e-48 196.4 129 72.9
FvH4_4g13140 Fragaria vesca HOM05D000324 ORTHO05D004875 2.3e-48 195.7 129 76.0
Lalb_Chr11g0075861 Lupinus albus HOM05D000324 ORTHO05D004875 2.3e-48 195.7 129 69.8
Nitab4.5_0000037g0030 Nicotiana tabacum HOM05D000324 ORTHO05D004875 2.3e-48 195.7 129 72.9
RcHm_v2.0_Chr4g0413021 Rosa chinensis HOM05D000324 ORTHO05D004875 2.3e-48 195.7 129 76.0
Hund19019 Selenicereus undatus HOM05D000324 ORTHO05D004875 2.3e-48 195.7 129 74.4
Lj3C353G5 Lonicera japonica HOM05D000324 ORTHO05D004875 3.0e-48 195.3 129 73.6
Migut.G00782 Erythranthe guttata HOM05D000324 ORTHO05D004875 4.0e-48 194.9 129 72.9
Gohir.A05G322700 Gossypium hirsutum HOM05D000324 ORTHO05D004875 4.0e-48 194.9 129 72.1
COL.COLO4_05433 Corchorus olitorius HOM05D000324 ORTHO05D004875 5.2e-48 194.5 129 72.1
SalBow8G0037 Salvia bowleyana HOM05D000324 ORTHO05D004875 5.2e-48 194.5 129 72.1
Hund24430 Selenicereus undatus HOM05D000324 ORTHO05D004875 6.8e-48 194.1 129 73.6
Sopen09g035350 Solanum pennellii HOM05D000324 ORTHO05D004875 6.8e-48 194.1 129 72.1
Actinidia35826 Actinidia chinensis HOM05D000324 ORTHO05D004875 8.8e-48 193.7 129 73.6
Solyc09g092450.3 Solanum lycopersicum HOM05D000324 ORTHO05D004875 8.8e-48 193.7 129 71.3
Gohir.A10G128800 Gossypium hirsutum HOM05D000324 ORTHO05D004875 1.2e-47 193.4 129 71.3
Gorai.009G349600 Gossypium raimondii HOM05D000324 ORTHO05D004875 1.2e-47 193.4 129 72.1
Rhsim09G0031500 Rhododendron simsii HOM05D000324 ORTHO05D004875 1.2e-47 193.4 129 76.7
FAN07G0429 Fragaria x ananassa HOM05D000324 ORTHO05D004875 1.5e-47 193.0 129 74.4
HanXRQChr01g0022111 Helianthus annuus HOM05D000324 ORTHO05D004875 2.0e-47 192.6 129 74.4
TPR.G28942 Trifolium pratense HOM05D000324 ORTHO05D004875 2.0e-47 192.6 129 69.0
Cpa.g.sc157.34 Carica papaya HOM05D000324 ORTHO05D004875 2.6e-47 192.2 129 74.4
Thecc.04G193200 Theobroma cacao HOM05D000324 ORTHO05D004875 2.6e-47 192.2 129 72.1
Duzib212G0095 Durio zibethinus HOM05D000324 ORTHO05D004875 7.5e-47 190.7 127 71.7
FAN12G1738 Fragaria x ananassa HOM05D000324 ORTHO05D004875 7.5e-47 190.7 129 74.4
Glyma.11G254100 Glycine max HOM05D000324 ORTHO05D004875 7.5e-47 190.7 129 69.8
FvH4_4g13151 Fragaria vesca HOM05D000324 ORTHO05D004875 9.8e-47 190.3 129 74.4
arahy.Tifrunner.gnm1.ann1.II2GNC Arachis hypogaea HOM05D000324 ORTHO05D004875 1.7e-46 189.5 129 69.0
FAN17G1435 Fragaria x ananassa HOM05D000324 ORTHO05D004875 1.7e-46 189.5 129 74.4
MD04G1018700 Malus domestica HOM05D000324 ORTHO05D004875 1.7e-46 189.5 130 72.3
arahy.Tifrunner.gnm1.ann1.8EJC90 Arachis hypogaea HOM05D000324 ORTHO05D004875 2.2e-46 189.1 129 68.2
Gohir.D10G137300 Gossypium hirsutum HOM05D000324 ORTHO05D004875 2.2e-46 189.1 129 70.5
ClCG06G003220 Citrullus lanatus HOM05D000324 ORTHO05D004875 3.7e-46 188.3 129 69.8
Oeu050714.1 Olea europaea HOM05D000324 ORTHO05D004875 3.7e-46 188.3 129 72.9
Medtr3g084450 Medicago truncatula HOM05D000324 ORTHO05D004875 4.9e-46 188.0 129 69.0
Rhsim09G0061500 Rhododendron simsii HOM05D000324 ORTHO05D004875 8.3e-46 187.2 129 74.4
ECA248G0353 Erigeron canadensis HOM05D000324 ORTHO05D004875 1.1e-45 186.8 129 72.1
ECA248G0929 Erigeron canadensis HOM05D000324 ORTHO05D004875 2.4e-45 185.7 129 71.3
ECA248G2180 Erigeron canadensis HOM05D000324 ORTHO05D004875 2.4e-45 185.7 129 72.1
Medtr3g084470 Medicago truncatula HOM05D000324 ORTHO05D004875 2.4e-45 185.7 129 69.0
Ca_16424_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 3.1e-45 185.3 129 66.7
Gorai.011G152500 Gossypium raimondii HOM05D000324 ORTHO05D004875 3.1e-45 185.3 129 69.8
CsaV3_6G001070 Cucumis sativus L. HOM05D000324 ORTHO05D004875 5.4e-45 184.5 129 68.2
Sed0014440 Sechium edule HOM05D000324 ORTHO05D004875 7.0e-45 184.1 129 68.2
Carub.0003s2409 Capsella rubella HOM05D000324 ORTHO05D004875 1.2e-44 183.3 130 68.5
Glyma.05G151200 Glycine max HOM05D000324 ORTHO05D004875 1.2e-44 183.3 129 66.7
Phvul.001G265700 Phaseolus vulgaris HOM05D000324 ORTHO05D004875 2.0e-44 182.6 129 67.4
Aqoxy2G03912 Aquilegia oxysepala HOM05D000324 ORTHO05D004875 2.7e-44 182.2 129 71.3
BcaB03g14616 Brassica carinata HOM05D000324 ORTHO05D004875 3.5e-44 181.8 130 69.2
VMungo1383G3515 Vigna mungo HOM05D000324 ORTHO05D004875 4.5e-44 181.4 129 66.7
DCAR_026665 Daucus carota HOM05D000324 ORTHO05D004875 5.9e-44 181.0 129 68.2
Lalb_Chr13g0294751 Lupinus albus HOM05D000324 ORTHO05D004875 5.9e-44 181.0 130 67.7
Zm00001eb064380 Zea mays HOM05D000324 ORTHO05D004875 5.9e-44 181.0 129 65.1
CARHR099770 Cardamine hirsuta HOM05D000324 ORTHO05D004875 7.7e-44 180.6 130 67.7
Lj3A361T14 Lonicera japonica HOM05D000324 ORTHO05D004875 7.7e-44 180.6 121 74.4
Os03g0845500 Oryza sativa ssp. japonica HOM05D000324 ORTHO05D004875 7.7e-44 180.6 129 67.4
Psat7g076000 Pisum sativum HOM05D000324 ORTHO05D004875 7.7e-44 180.6 129 62.8
BraA03t13473Z Brassica rapa HOM05D000324 ORTHO05D004875 1.0e-43 180.3 130 66.9
Sp3g21490 Schrenkiella parvula HOM05D000324 ORTHO05D004875 1.0e-43 180.3 130 66.9
CANSAT78G1272 Cannabis sativa HOM05D000324 ORTHO05D004875 1.3e-43 179.9 127 70.1
Lsat_1_v5_gn_1_70360 Lactuca sativa HOM05D000324 ORTHO05D004875 1.3e-43 179.9 131 67.2
Thhalv10002419m.g Eutrema salsugineum HOM05D000324 ORTHO05D004875 1.7e-43 179.5 130 66.9
Medtr8g083170 Medicago truncatula HOM05D000324 ORTHO05D004875 1.7e-43 179.5 130 65.4
Lsat_1_v5_gn_1_70301 Lactuca sativa HOM05D000324 ORTHO05D004875 2.3e-43 179.1 129 67.4
Lsat_1_v5_gn_1_70400 Lactuca sativa HOM05D000324 ORTHO05D004875 2.3e-43 179.1 129 67.4
AT3G23790 Arabidopsis thaliana HOM05D000324 ORTHO05D004875 2.9e-43 178.7 130 65.4
BcaC01g03365 Brassica carinata HOM05D000324 ORTHO05D004875 2.9e-43 178.7 130 66.9
BolC3t17589H Brassica oleracea HOM05D000324 ORTHO05D004875 2.9e-43 178.7 130 66.9
Phvul.003G051300 Phaseolus vulgaris HOM05D000324 ORTHO05D004875 2.9e-43 178.7 129 64.3
TPR.G11871 Trifolium pratense HOM05D000324 ORTHO05D004875 2.9e-43 178.7 129 62.0
A03p43350 Brassica napus HOM05D000324 ORTHO05D004875 3.8e-43 178.3 130 66.2
AL3G38770 Arabidopsis lyrata HOM05D000324 ORTHO05D004875 5.0e-43 177.9 130 64.6
C03p53280 Brassica napus HOM05D000324 ORTHO05D004875 8.6e-43 177.2 130 66.2
PGR083G2335 Punica granatum HOM05D000324 ORTHO05D004875 1.1e-42 176.8 149 61.7
Aa31LG8G10350 Aethionema arabicum HOM05D000324 ORTHO05D004875 1.5e-42 176.4 131 67.2
THA.LOC104808688 Tarenaya hassleriana HOM05D000324 ORTHO05D004875 1.5e-42 176.4 131 70.2
THA.LOC104804788 Tarenaya hassleriana HOM05D000324 ORTHO05D004875 1.6e-41 172.9 130 66.9
Lj4g0014913 Lotus japonicus HOM05D000324 ORTHO05D004875 2.8e-41 172.2 130 61.5
BcaB02g08635 Brassica carinata HOM05D000324 ORTHO05D004875 1.0e-40 170.2 129 65.9
A04p08090 Brassica napus HOM05D000324 ORTHO05D004875 1.4e-40 169.9 129 65.9
BraA04t16497Z Brassica rapa HOM05D000324 ORTHO05D004875 1.4e-40 169.9 129 65.9
Ca_17999_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 1.4e-40 169.9 129 62.8
C04p41750 Brassica napus HOM05D000324 ORTHO05D004875 1.8e-40 169.5 129 65.9
Thhalv10024478m.g Eutrema salsugineum HOM05D000324 ORTHO05D004875 1.8e-40 169.5 129 65.9
Aa31LG9G3300 Aethionema arabicum HOM05D000324 ORTHO05D004875 8.9e-40 167.2 130 62.3
BolC4t25753H Brassica oleracea HOM05D000324 ORTHO05D004875 1.2e-39 166.8 129 64.3
Sp7g11870 Schrenkiella parvula HOM05D000324 ORTHO05D004875 1.5e-39 166.4 130 66.2
BcaC02g09362 Brassica carinata HOM05D000324 ORTHO05D004875 2.0e-39 166.0 129 64.3
ATR0069G039 Amborella trichopoda HOM05D000324 ORTHO05D004875 4.4e-39 164.9 131 62.6
Peaxi162Scf00286g01036 Petunia axillaris HOM05D000324 ORTHO05D004875 1.3e-38 163.3 129 62.8
vmacro00432 Vaccinium macrocarpon HOM05D000324 ORTHO05D004875 2.2e-38 162.5 104 79.8
Carub.0007s2836 Capsella rubella HOM05D000324 ORTHO05D004875 2.9e-38 162.2 129 62.0
AT4G14070 Arabidopsis thaliana HOM05D000324 ORTHO05D004875 1.4e-37 159.8 129 62.0
AL7G42350 Arabidopsis lyrata HOM05D000324 ORTHO05D004875 9.2e-37 157.1 129 61.2
CARHR220060 Cardamine hirsuta HOM05D000324 ORTHO05D004875 3.5e-36 155.2 129 60.5
MELO3C021161.2 Cucumis melo HOM05D000324 ORTHO05D004875 1.0e-35 153.7 177 49.2
Pp3c19_18340 Physcomitrium patens HOM05D000324 ORTHO05D004875 8.6e-35 150.6 129 57.4
SGA_v2.0_scaffold19G08786 Striga asiatica HOM05D000324 ORTHO05D004875 1.4e-32 143.3 129 59.7
Pp3c8_18330 Physcomitrium patens HOM05D000324 ORTHO05D004875 2.3e-32 142.5 126 50.8
Pp3c23_17210 Physcomitrium patens HOM05D000324 ORTHO05D004875 6.8e-32 141.0 126 51.6
CBR_g38044 Chara braunii HOM05D000324 ORTHO05D004875 2.0e-31 139.4 127 52.0
Hma1.2p1_0806F.1_g221370 Hydrangea macrophylla HOM05D000324 ORTHO05D004875 2.6e-31 139.0 80 81.2
CDE05G1202 Ceratophyllum demersum HOM05D000324 ORTHO05D004875 4.4e-31 138.3 129 55.8
SMO364G0046 Selaginella moellendorffii HOM05D000324 ORTHO05D004875 3.7e-30 135.2 100 63.0
Mapoly0169s0028 Marchantia polymorpha HOM05D000324 ORTHO05D004875 1.9e-29 132.9 95 61.1
Psat5g099440 Pisum sativum HOM05D000324 ORTHO05D004875 7.0e-29 131.0 88 71.6
Lj3A347G4 Lonicera japonica HOM05D000324 ORTHO05D004875 2.1e-25 119.4 115 55.7
Prupe.1G187500 Prunus persica HOM05D000324 ORTHO05D004875 3.1e-24 115.5 76 76.3
Prupe.1G168200 Prunus persica HOM05D000324 ORTHO05D004875 1.1e-18 97.1 65 70.8
Hma1.2p1_0424F.1_g150260 Hydrangea macrophylla HOM05D000169 ORTHO05D004875 4.7e-17 91.7 54 74.1
Cre06.g299800 Chlamydomonas reinhardtii HOM05D000324 ORTHO05D004875 2.3e-16 89.4 100 47.0
Oeu049053.1 Olea europaea HOM05D000324 ORTHO05D004875 5.2e-16 88.2 55 70.9
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 1.5e-15 86.7 54 72.2
AagrBONN_evm.TU.Sc2ySwM_344.4832 Anthoceros agrestis HOM05D000324 ORTHO05D004875 1.7e-14 83.2 54 64.8
SEGI_35349 Sequoiadendron giganteum HOM05D000324 ORTHO05D004875 2.9e-14 82.4 56 66.1
SEGI_34416 Sequoiadendron giganteum HOM05D000324 ORTHO05D004875 2.1e-12 76.3 73 56.2
Lj3P372T6 Lonicera japonica HOM05D000169 ORTHO05D048450 6.8e-08 61.2 31 80.6
Cre12.g507400 Chlamydomonas reinhardtii HOM05D000324 ORTHO05D003243 7.6e-07 57.8 103 35.9


User provided reference genes

Program Settings