Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 1.9e-87 325.9 170 100.0
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 2.3e-77 292.4 170 89.4
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 8.8e-77 290.4 169 87.6
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 1.7e-75 286.2 169 87.6
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 4.8e-75 284.6 169 86.4
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 1.4e-74 283.1 168 86.3
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 1.4e-74 283.1 168 86.3
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 4.1e-74 281.6 167 87.4
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 7.0e-74 280.8 169 84.6
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 9.1e-74 280.4 169 84.6
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 9.1e-74 280.4 169 84.6
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.2e-73 280.0 169 84.6
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.2e-73 280.0 169 84.6
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 1.2e-73 280.0 169 85.8
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 1.6e-73 279.6 169 82.8
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 2.0e-73 279.3 167 85.0
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 2.0e-73 279.3 168 85.1
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 5.9e-73 277.7 169 84.6
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 5.9e-73 277.7 169 84.6
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 1.3e-72 276.6 169 82.8
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 1.7e-72 276.2 169 82.2
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 2.2e-72 275.8 169 84.0
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 2.9e-72 275.4 169 84.0
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 3.8e-72 275.0 170 82.9
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 3.8e-72 275.0 169 85.2
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 5.0e-72 274.6 170 82.9
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 6.5e-72 274.2 170 82.9
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 8.5e-72 273.9 169 81.7
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 8.5e-72 273.9 167 85.0
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 2.5e-71 272.3 169 81.7
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 3.2e-71 271.9 169 81.1
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 3.2e-71 271.9 169 81.7
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 7.2e-71 270.8 168 82.7
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 7.2e-71 270.8 167 82.0
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 1.2e-70 270.0 169 82.8
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 2.7e-70 268.9 169 82.2
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 2.7e-70 268.9 169 80.5
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 2.7e-70 268.9 168 81.5
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 6.1e-70 267.7 169 80.5
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 1.0e-69 266.9 168 82.1
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 1.8e-69 266.2 169 80.5
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 1.8e-69 266.2 169 81.1
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 8.8e-69 263.8 169 81.1
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 8.8e-69 263.8 169 81.1
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 1.2e-68 263.5 169 80.5
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 1.2e-68 263.5 169 79.3
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 1.2e-68 263.5 176 77.8
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 1.5e-68 263.1 169 77.5
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 2.0e-68 262.7 168 78.6
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 3.4e-68 261.9 169 79.3
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 3.4e-68 261.9 169 79.3
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 4.4e-68 261.5 169 80.5
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 1.7e-67 259.6 169 81.1
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 3.7e-67 258.5 168 78.0
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 8.3e-67 257.3 169 79.3
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 1.4e-66 256.5 168 76.2
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 1.4e-66 256.5 168 76.8
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 1.8e-66 256.1 169 75.7
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 2.4e-66 255.8 168 79.2
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 3.1e-66 255.4 165 80.6
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 7.0e-66 254.2 167 77.8
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 7.0e-66 254.2 167 77.8
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 7.0e-66 254.2 169 78.1
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 9.1e-66 253.8 169 75.1
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 1.2e-65 253.4 167 77.8
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 3.5e-65 251.9 167 77.8
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 4.5e-65 251.5 167 77.2
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 5.9e-65 251.1 167 77.2
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 7.7e-65 250.8 175 78.3
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 1.0e-64 250.4 167 77.2
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 2.2e-64 249.2 167 76.6
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 5.0e-64 248.1 167 76.0
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 8.5e-64 247.3 169 76.3
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 1.5e-63 246.5 169 76.3
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 7.2e-63 244.2 169 76.3
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 7.2e-63 244.2 169 76.3
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 7.2e-63 244.2 169 76.3
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 9.5e-63 243.8 198 68.2
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 8.0e-62 240.7 168 70.2
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 5.2e-61 238.0 150 80.7
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 2.0e-60 236.1 149 79.9
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 3.4e-60 235.3 171 76.6
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 5.7e-60 234.6 185 69.2
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 7.5e-60 234.2 167 74.9
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 1.3e-59 233.4 163 75.5
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 2.2e-59 232.6 164 72.0
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 4.9e-59 231.5 164 72.0
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 4.9e-59 231.5 148 80.4
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 1.8e-58 229.6 186 71.0
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.8e-58 229.6 164 71.3
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 3.1e-58 228.8 180 72.2
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 4.1e-58 228.4 169 73.4
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 9.2e-58 227.3 169 72.8
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 1.0e-56 223.8 172 70.3
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 2.9e-56 222.2 200 63.0
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 6.6e-56 221.1 192 64.6
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 1.1e-55 220.3 147 77.6
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 1.1e-55 220.3 143 74.1
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 1.9e-55 219.5 167 67.1
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 1.9e-55 219.5 167 67.1
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 5.6e-55 218.0 169 69.2
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 9.5e-55 217.2 236 57.6
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 1.2e-54 216.9 164 68.3
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 1.6e-54 216.5 145 76.6
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 7.8e-49 197.6 168 60.7
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 8.6e-48 194.1 169 66.9
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 8.6e-48 194.1 167 59.3
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 5.6e-47 191.4 165 61.2
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 2.1e-46 189.5 133 73.7
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 2.8e-46 189.1 115 80.0
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 1.4e-42 176.8 167 54.5
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 4.1e-42 175.3 170 62.9
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 6.4e-35 151.4 104 72.1
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 1.1e-29 134.0 78 84.6
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 6.4e-27 124.8 110 60.9
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 4.1e-26 122.1 174 43.1
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 1.3e-24 117.1 79 74.7
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 5.1e-24 115.2 62 91.9
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 1.2e-22 110.5 61 88.5
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 3.8e-19 99.0 99 51.5
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 1.1e-18 97.4 81 56.8
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.1e-18 97.4 61 80.3
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.1e-18 97.4 62 80.6
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 1.1e-18 97.4 106 50.9
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.9e-18 96.7 62 82.3
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.9e-18 96.7 62 83.9
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.3e-15 85.9 56 82.1
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.3e-14 84.0 55 81.8
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 1.6e-14 83.6 126 39.7
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 2.1e-14 83.2 111 45.9
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 9.3e-10 67.8 42 76.2
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 2.7e-09 66.2 36 88.9
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 2.7e-09 66.2 48 66.7
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 3.5e-09 65.9 87 47.1
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 4.6e-09 65.5 35 91.4
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 6.0e-09 65.1 41 75.6
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 1.3e-08 63.9 35 85.7
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 1.1e-07 60.8 124 36.3


User provided reference genes

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