Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08045 Nelumbo nucifera HOM05D002068 ORTHO05D002029 2.3e-97 359.4 254 100.0
TAR375G0554 Trochodendron aralioides HOM05D002068 ORTHO05D002029 1.6e-50 203.8 315 50.8
Cfa012439 Carpinus fangiana HOM05D002068 ORTHO05D002029 7.5e-48 194.9 324 47.5
Haze_08229 Corylus avellana HOM05D002068 ORTHO05D002029 3.2e-46 189.5 324 46.9
Dinv25215 Davidia involucrata HOM05D002068 ORTHO05D002029 3.0e-44 183.0 314 40.8
CSS0037727 Camellia sinensis var. sinensis HOM05D002068 ORTHO05D002029 3.3e-43 179.5 256 57.4
CSS0039799 Camellia sinensis var. sinensis HOM05D002068 ORTHO05D002029 3.3e-43 179.5 256 57.4
vmacro00330 Vaccinium macrocarpon HOM05D002068 ORTHO05D002029 4.3e-43 179.1 245 48.6
Actinidia03376 Actinidia chinensis HOM05D002068 ORTHO05D002029 9.5e-43 177.9 227 52.0
CiPaw.11G093300 Carya illinoinensis HOM05D002068 ORTHO05D002029 1.2e-42 177.6 324 46.9
TWI15G0848 Tripterygium wilfordii HOM05D002068 ORTHO05D002029 1.6e-42 177.2 260 55.4
Dinv28957 Davidia involucrata HOM05D002068 ORTHO05D002029 2.8e-42 176.4 317 43.8
Manes.05G009900 Manihot esculenta HOM05D002068 ORTHO05D002029 4.7e-42 175.6 256 56.2
CiPaw.12G063800 Carya illinoinensis HOM05D002068 ORTHO05D002029 8.9e-41 171.4 253 53.4
QL12p005199 Quercus lobata HOM05D002068 ORTHO05D002029 8.9e-41 171.4 254 51.2
TAR374G0127 Trochodendron aralioides HOM05D002068 ORTHO05D002029 5.8e-40 168.7 304 49.0
Phvul.002G141800 Phaseolus vulgaris HOM05D002068 ORTHO05D002029 7.5e-40 168.3 262 51.5
Prupe.5G036600 Prunus persica HOM05D002068 ORTHO05D002029 2.2e-39 166.8 255 56.1
CSS0014279 Camellia sinensis var. sinensis HOM05D002068 ORTHO05D002029 6.4e-39 165.2 224 58.9
TWI81G0802 Tripterygium wilfordii HOM05D002068 ORTHO05D002029 6.4e-39 165.2 258 41.9
Hma1.2p1_0303F.1_g119120 Hydrangea macrophylla HOM05D002068 ORTHO05D002029 8.3e-39 164.9 316 42.7
TWI60G1070 Tripterygium wilfordii HOM05D002068 ORTHO05D002029 1.9e-38 163.7 260 50.4
MD14G1120900 Malus domestica HOM05D002068 ORTHO05D002029 1.2e-37 161.0 256 52.0
arahy.Tifrunner.gnm1.ann1.Q5RTUN Arachis hypogaea HOM05D002068 ORTHO05D002029 1.6e-37 160.6 267 48.7
arahy.Tifrunner.gnm1.ann1.VYGU2E Arachis hypogaea HOM05D002068 ORTHO05D002029 1.6e-37 160.6 267 48.7
Ca_06078_v3 Cicer arietinum L. HOM05D002068 ORTHO05D002029 2.1e-37 160.2 260 51.2
Ciclev10012154m.g Citrus clementina HOM05D002068 ORTHO05D002029 1.7e-36 157.1 269 51.7
Cpa.g.sc71.70 Carica papaya HOM05D002068 ORTHO05D002029 6.6e-36 155.2 341 39.3
Psat2g136560 Pisum sativum HOM05D002068 ORTHO05D002029 8.6e-36 154.8 259 54.8
Eucgr.D02200 Eucalyptus grandis HOM05D002068 ORTHO05D002029 3.3e-35 152.9 250 42.0
Hma1.2p1_1063F.1_g253550 Hydrangea macrophylla HOM05D002068 ORTHO05D002029 3.3e-35 152.9 311 45.3
Hma1.2p1_2704F.1_g327150 Hydrangea macrophylla HOM05D002068 ORTHO05D002029 3.3e-35 152.9 311 45.3
Rhsim07G0126700 Rhododendron simsii HOM05D002068 ORTHO05D002029 4.3e-35 152.5 258 57.8
Lj2g0016669 Lotus japonicus HOM05D002068 ORTHO05D002029 7.3e-35 151.8 260 50.4
Peaxi162Scf00615g00064 Petunia axillaris HOM05D002068 ORTHO05D002029 1.2e-34 151.0 265 48.7
Sabra03G0061400 Salix brachista HOM05D002068 ORTHO05D002029 6.2e-34 148.7 257 52.1
VMungo1215G2655 Vigna mungo HOM05D002068 ORTHO05D002029 6.2e-34 148.7 263 46.0
PGSC0003DMG400002107 Solanum tuberosum HOM05D002068 ORTHO05D002029 1.1e-33 147.9 375 36.5
MD06G1101200 Malus domestica HOM05D002068 ORTHO05D002029 2.3e-33 146.7 250 52.4
Lalb_Chr05g0216091 Lupinus albus HOM05D002068 ORTHO05D002029 4.0e-33 146.0 262 50.0
Nitab4.5_0000256g0320 Nicotiana tabacum HOM05D002068 ORTHO05D002029 4.0e-33 146.0 275 47.6
Peaxi162Scf00460g00033 Petunia axillaris HOM05D002068 ORTHO05D002029 6.8e-33 145.2 375 38.7
Actinidia14810 Actinidia chinensis HOM05D002068 ORTHO05D002029 8.9e-33 144.8 253 42.3
Potri.003G091800 Populus trichocarpa HOM05D002068 ORTHO05D002029 8.9e-33 144.8 264 51.5
Lalb_Chr16g0381391 Lupinus albus HOM05D002068 ORTHO05D002029 3.4e-32 142.9 262 44.7
Potri.001G142400 Populus trichocarpa HOM05D002068 ORTHO05D002029 5.8e-32 142.1 256 48.8
arahy.Tifrunner.gnm1.ann1.RMYT06 Arachis hypogaea HOM05D002068 ORTHO05D002029 1.3e-31 141.0 283 47.3
Nitab4.5_0004604g0010 Nicotiana tabacum HOM05D002068 ORTHO05D002029 6.4e-31 138.7 275 45.5
FAN07G0940 Fragaria x ananassa HOM05D002068 ORTHO05D002029 1.1e-30 137.9 252 50.4
Gohir.D03G171200 Gossypium hirsutum HOM05D002068 ORTHO05D002029 3.2e-30 136.3 282 47.9
CsaV3_3G001730 Cucumis sativus L. HOM05D002068 ORTHO05D002029 4.1e-30 136.0 260 50.4
RcHm_v2.0_Chr7g0209711 Rosa chinensis HOM05D002068 ORTHO05D002029 9.2e-30 134.8 251 49.0
Thecc.03G227900 Theobroma cacao HOM05D002068 ORTHO05D002029 1.6e-29 134.0 349 41.0
AUR62018716 Chenopodium quinoa HOM05D002068 ORTHO05D002029 2.1e-29 133.7 262 46.6
MELO3C013853.2 Cucumis melo HOM05D002068 ORTHO05D002029 2.1e-29 133.7 262 49.6
Gorai.003G181800 Gossypium raimondii HOM05D002068 ORTHO05D002029 2.7e-29 133.3 282 47.2
DCAR_008272 Daucus carota HOM05D002068 ORTHO05D002029 4.6e-29 132.5 296 36.1
CANSAT21G2072 Cannabis sativa HOM05D002068 ORTHO05D002029 6.0e-29 132.1 265 46.0
Oeu006980.1 Olea europaea HOM05D002068 ORTHO05D002029 6.0e-29 132.1 241 53.1
Oeu006981.1 Olea europaea HOM05D002068 ORTHO05D002029 2.3e-28 130.2 241 53.1
Cc08_g02760 Coffea canephora HOM05D002068 ORTHO05D002029 5.1e-28 129.0 231 42.0
Sabra01G0111200 Salix brachista HOM05D002068 ORTHO05D002029 6.6e-28 128.6 234 50.4
Lj8C300T9 Lonicera japonica HOM05D002068 ORTHO05D002029 1.1e-27 127.9 328 37.8
Sc01g0007430 Simmondsia chinensis HOM05D002068 ORTHO05D002029 1.1e-27 127.9 358 34.1
Sopen06g021390 Solanum pennellii HOM05D002068 ORTHO05D002029 1.5e-27 127.5 384 34.6
Aqoxy3G02351 Aquilegia oxysepala HOM05D002068 ORTHO05D002029 1.9e-27 127.1 250 55.2
THA.LOC104814442 Tarenaya hassleriana HOM05D002068 ORTHO05D002029 3.3e-27 126.3 297 37.7
Atru.chr6.1710 Acer truncatum HOM05D002068 ORTHO05D002029 5.6e-27 125.6 235 48.9
Duzib084G1376 Durio zibethinus HOM05D002068 ORTHO05D002029 7.3e-27 125.2 347 40.1
AUR62007291 Chenopodium quinoa HOM05D002068 ORTHO05D002029 2.8e-26 123.2 288 47.6
PGR031G2163 Punica granatum HOM05D002068 ORTHO05D002029 4.7e-26 122.5 256 49.2
Nn4g23405 Nelumbo nucifera HOM05D002068 ORTHO05D002029 1.4e-25 120.9 92 70.7
Sed0013007 Sechium edule HOM05D002068 ORTHO05D002029 3.1e-25 119.8 252 46.4
MELO3C003409.2 Cucumis melo HOM05D002068 ORTHO05D002029 5.2e-25 119.0 255 36.9
THA.LOC104807950 Tarenaya hassleriana HOM05D002068 ORTHO05D002029 5.2e-25 119.0 286 41.6
FvH4_4g21960 Fragaria vesca HOM05D002068 ORTHO05D002029 6.9e-25 118.6 252 45.6
Sed0021104 Sechium edule HOM05D002068 ORTHO05D002029 1.5e-24 117.5 246 39.0
TPR.G1043 Trifolium pratense HOM05D002068 ORTHO05D002029 4.4e-24 115.9 264 49.6
Migut.E00932 Erythranthe guttata HOM05D002068 ORTHO05D002029 1.3e-23 114.4 265 43.8
CsaV3_3G049180 Cucumis sativus L. HOM05D002068 ORTHO05D002029 2.2e-23 113.6 260 36.5
Duzib205G1382 Durio zibethinus HOM05D002068 ORTHO05D002029 2.2e-23 113.6 271 49.8
CAN.G1381.5 Capsicum annuum HOM05D002068 ORTHO05D002029 2.9e-23 113.2 335 42.4
ECA233G6139 Erigeron canadensis HOM05D002068 ORTHO05D002029 2.9e-23 113.2 263 39.9
Solyc06g061190.1 Solanum lycopersicum HOM05D002068 ORTHO05D002029 2.9e-23 113.2 394 32.2
Glyma.01G018700 Glycine max HOM05D002068 ORTHO05D002029 4.9e-23 112.5 256 50.0
VMungo0251G3624 Vigna mungo HOM05D002068 ORTHO05D002029 4.9e-23 112.5 245 36.7
COL.COLO4_13969 Corchorus olitorius HOM05D002068 ORTHO05D002029 1.4e-22 110.9 287 44.6
Hund14399 Selenicereus undatus HOM05D002068 ORTHO05D002029 1.9e-22 110.5 302 41.4
Duzib068G0736 Durio zibethinus HOM05D002068 ORTHO05D002029 2.4e-22 110.2 341 39.9
Gorai.006G216500 Gossypium raimondii HOM05D002068 ORTHO05D002029 4.2e-22 109.4 215 37.7
Ah.12g055030 Amaranthus hybridus HOM05D002068 ORTHO05D002029 9.3e-22 108.2 297 39.4
HanXRQChr13g0414131 Helianthus annuus HOM05D002068 ORTHO05D002029 1.6e-21 107.5 393 39.4
GSVIVG01013160001 Vitis vinifera HOM05D002068 ORTHO05D002029 1.0e-20 104.8 224 40.6
CARHR129400 Cardamine hirsuta HOM05D002068 ORTHO05D002029 1.3e-20 104.4 251 39.4
Phvul.003G285600 Phaseolus vulgaris HOM05D002068 ORTHO05D002029 3.0e-20 103.2 257 35.8
PGSC0003DMG400042183 Solanum tuberosum HOM05D002068 ORTHO05D002029 3.0e-20 103.2 309 45.0
DCAR_005628 Daucus carota HOM05D002068 ORTHO05D002029 3.9e-20 102.8 161 56.5
arahy.Tifrunner.gnm1.ann1.K5VAZM Arachis hypogaea HOM05D002068 ORTHO05D002029 5.1e-20 102.4 270 41.9
Medtr5g030570 Medicago truncatula HOM05D002068 ORTHO05D002029 1.5e-19 100.9 269 48.7
ATR0665G256 Amborella trichopoda HOM05D002068 ORTHO05D002029 1.9e-19 100.5 235 42.6
MSTRG.12156 Avicennia marina HOM05D002068 ORTHO05D002029 1.9e-19 100.5 302 37.4
Lsat_1_v5_gn_6_65520 Lactuca sativa HOM05D002068 ORTHO05D002029 2.5e-19 100.1 317 33.1
Carub.0001s3100 Capsella rubella HOM05D002068 ORTHO05D002029 3.3e-19 99.8 236 37.7
Sopen08g025530 Solanum pennellii HOM05D002068 ORTHO05D002029 5.6e-19 99.0 320 42.2
Aa31LG2G13360 Aethionema arabicum HOM05D002068 ORTHO05D002029 1.8e-17 94.0 285 40.4
Glyma.01G096800 Glycine max HOM05D002068 ORTHO05D002029 1.8e-17 94.0 253 38.7
Sp4g17450 Schrenkiella parvula HOM05D002068 ORTHO05D002029 3.1e-17 93.2 289 35.6
Thhalv10016759m.g Eutrema salsugineum HOM05D002068 ORTHO05D002029 4.5e-16 89.4 295 33.6
BolC4t27901H Brassica oleracea HOM05D002068 ORTHO05D002029 4.9e-15 85.9 280 39.6
Gorai.004G185400 Gossypium raimondii HOM05D002068 ORTHO05D002029 4.9e-15 85.9 271 31.0
BcaB06g28833 Brassica carinata HOM05D002068 ORTHO05D002029 6.4e-15 85.5 332 31.0
CDE03G0421 Ceratophyllum demersum HOM05D002068 ORTHO05D002029 1.9e-14 84.0 120 44.2
PSO151G0076 Papaver somniferum HOM05D002068 ORTHO05D002029 2.4e-14 83.6 271 39.1
BcaC02g07727 Brassica carinata HOM05D002068 ORTHO05D002029 3.2e-14 83.2 276 42.4
BraA04t18182Z Brassica rapa HOM05D002068 ORTHO05D002029 3.2e-14 83.2 253 40.7
Glyma.08G272000 Glycine max HOM05D002068 ORTHO05D002029 3.2e-14 83.2 240 34.6
unitig_8.g3918 Utricularia gibba HOM05D002068 ORTHO05D002029 3.2e-14 83.2 176 38.1
AT1G32610 Arabidopsis thaliana HOM05D002068 ORTHO05D002029 4.2e-14 82.8 275 32.7
Aa31LG9G15270 Aethionema arabicum HOM05D002068 ORTHO05D002029 7.1e-14 82.0 314 30.6
AL4G31260 Arabidopsis lyrata HOM05D002068 ORTHO05D002029 7.1e-14 82.0 110 48.2
Carub.0004s1693 Capsella rubella HOM05D002068 ORTHO05D002029 7.1e-14 82.0 108 53.7
Gohir.A03G001100 Gossypium hirsutum HOM05D002068 ORTHO05D002029 9.3e-14 81.6 287 40.8
BcaC02g11626 Brassica carinata HOM05D002068 ORTHO05D002029 2.7e-13 80.1 107 46.7
C04p12950 Brassica napus HOM05D002068 ORTHO05D002029 2.7e-13 80.1 107 46.7
C04p64180 Brassica napus HOM05D002068 ORTHO05D002029 2.7e-13 80.1 278 39.9
BolC4t22938H Brassica oleracea HOM05D002068 ORTHO05D002029 2.7e-13 80.1 107 46.7
BraA05t19991Z Brassica rapa HOM05D002068 ORTHO05D002029 2.7e-13 80.1 290 35.2
Oeu020141.1 Olea europaea HOM05D002068 ORTHO05D002029 3.5e-13 79.7 141 46.1
Glyma.08G272100 Glycine max HOM05D002068 ORTHO05D002029 4.6e-13 79.3 240 35.4
AL1G46870 Arabidopsis lyrata HOM05D002068 ORTHO05D002029 7.9e-13 78.6 259 32.4
BcaB02g09468 Brassica carinata HOM05D002068 ORTHO05D002029 1.3e-12 77.8 303 30.7
ATR1133G059 Amborella trichopoda HOM05D002068 ORTHO05D002029 1.8e-12 77.4 113 41.6
Gohir.D09G193050 Gossypium hirsutum HOM05D002068 ORTHO05D002029 3.9e-12 76.3 215 33.0
ClCG10G001610 Citrullus lanatus HOM05D002068 ORTHO05D001234 8.7e-12 75.1 268 41.0
unitig_22.g5497 Utricularia gibba HOM05D000381 ORTHO05D002029 1.5e-11 74.3 282 32.6
A04p26780 Brassica napus HOM05D002068 ORTHO05D002029 2.5e-11 73.6 113 43.4
AT2G35230 Arabidopsis thaliana HOM05D002068 ORTHO05D002029 5.6e-11 72.4 300 27.7
Sed0014879 Sechium edule HOM05D002068 ORTHO05D002029 5.6e-11 72.4 263 36.1
Glyma.08G272200 Glycine max HOM05D002068 ORTHO05D002029 7.4e-11 72.0 253 40.3
A05p10530 Brassica napus HOM05D002068 ORTHO05D002029 9.6e-11 71.6 309 32.7
CDE06G0671 Ceratophyllum demersum HOM05D002068 ORTHO05D002029 9.6e-11 71.6 138 39.1
HPP92_020799 Vanilla planifolia HOM05D002068 ORTHO05D002029 8.1e-10 68.6 258 44.2
BcaC01g05736 Brassica carinata HOM05D002068 ORTHO05D002029 5.3e-09 65.9 113 45.1
BolC3t14669H Brassica oleracea HOM05D002068 ORTHO05D002029 9.0e-09 65.1 108 44.4
PSO339G3558 Papaver somniferum HOM05D002068 ORTHO05D002029 1.2e-08 64.7 222 40.1
Ah.07g200340 Amaranthus hybridus HOM05D002068 ORTHO05D002029 1.5e-08 64.3 351 32.5
Lj1g0010802 Lotus japonicus HOM05D002068 ORTHO05D002029 2.0e-08 63.9 158 32.9
MBI04_g23601_MAGBIO Magnolia biondii HOM05D002068 ORTHO05D002029 3.4e-08 63.2 285 33.3
A03p19480 Brassica napus HOM05D002068 ORTHO05D002029 4.5e-08 62.8 106 46.2
BraA03t11201Z Brassica rapa HOM05D002068 ORTHO05D002029 4.5e-08 62.8 106 46.2
Lalb_Chr08g0242151 Lupinus albus HOM05D002068 ORTHO05D002029 5.8e-08 62.4 116 47.4
CiPaw.07G177400 Carya illinoinensis HOM05D002068 ORTHO05D002029 9.9e-08 61.6 260 34.6
Haze_22301 Corylus avellana HOM05D002068 ORTHO05D002029 2.2e-07 60.5 256 35.5
BcaC06g34348 Brassica carinata HOM05D002068 ORTHO05D002029 2.9e-07 60.1 214 33.6
C07p30090 Brassica napus HOM05D002068 ORTHO05D002029 2.9e-07 60.1 214 33.6
BolC7t43548H Brassica oleracea HOM05D002068 ORTHO05D002029 2.9e-07 60.1 214 33.6
CsaV3_3G047610 Cucumis sativus L. HOM05D002068 ORTHO05D002029 3.8e-07 59.7 256 35.5
Manes.01G233900 Manihot esculenta HOM05D002068 ORTHO05D002029 3.8e-07 59.7 92 43.5
CARHR174720 Cardamine hirsuta HOM05D002068 ORTHO05D002029 8.4e-07 58.5 253 31.6
A06p45670 Brassica napus HOM05D002068 ORTHO05D002029 1.1e-06 58.2 251 31.1
Lalb_Chr11g0065291 Lupinus albus HOM05D002068 ORTHO05D002029 1.1e-06 58.2 117 45.3
AL8G11560 Arabidopsis lyrata HOM05D002068 ORTHO05D002029 1.4e-06 57.8 244 32.4
DCAR_012887 Daucus carota HOM05D002068 ORTHO05D002029 1.4e-06 57.8 155 38.1
TAR381G1067 Trochodendron aralioides HOM05D002068 ORTHO05D002029 1.9e-06 57.4 242 32.6
HPP92_014860 Vanilla planifolia HOM05D002068 ORTHO05D002029 1.9e-06 57.4 138 37.7
Nn1g05438 Nelumbo nucifera HOM05D002068 ORTHO05D002029 2.4e-06 57.0 261 33.7
BraA06t27436Z Brassica rapa HOM05D002068 ORTHO05D002029 3.2e-06 56.6 245 30.6
THA.LOC104806709 Tarenaya hassleriana HOM05D002068 ORTHO05D002029 3.2e-06 56.6 211 31.3
C03p22700 Brassica napus HOM05D002068 ORTHO05D002029 5.5e-06 55.8 108 39.8
Duzib116G0768 Durio zibethinus HOM05D002068 ORTHO05D002029 9.3e-06 55.1 125 36.0


User provided reference genes

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