Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 3.3e-286 987.6 486 100.0
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 3.7e-213 745.0 486 77.4
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 4.0e-199 698.4 486 70.4
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 5.6e-193 677.9 491 69.7
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 9.6e-193 677.2 486 68.7
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 9.6e-193 677.2 442 75.1
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.6e-192 676.4 486 70.4
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 1.1e-191 673.7 462 74.0
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 5.8e-190 667.9 476 69.7
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 7.6e-190 667.5 491 69.0
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 1.7e-189 666.4 485 67.0
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 1.1e-188 663.7 461 73.3
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 2.4e-188 662.5 490 67.3
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 7.1e-188 661.0 430 75.1
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 9.3e-188 660.6 489 68.1
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 1.2e-187 660.2 448 75.2
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 6.0e-187 657.9 449 70.4
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 7.8e-187 657.5 490 69.6
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 1.7e-186 656.4 490 66.9
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 8.7e-186 654.1 445 73.7
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.5e-185 652.5 448 70.5
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 4.3e-185 651.7 493 68.2
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 9.6e-185 650.6 490 66.1
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 9.6e-185 650.6 490 66.1
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.6e-184 649.8 448 70.1
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 3.6e-184 648.7 444 70.7
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 6.2e-184 647.9 480 68.5
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.4e-183 646.7 452 69.2
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 4.0e-183 645.2 486 65.2
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 6.9e-183 644.4 442 73.5
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 6.9e-183 644.4 452 68.8
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 9.0e-183 644.0 458 70.3
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.5e-182 643.3 450 68.7
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 2.6e-182 642.5 359 84.7
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 4.9e-181 638.3 361 83.1
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 6.4e-181 637.9 457 68.7
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 1.1e-180 637.1 384 79.2
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 1.1e-180 637.1 470 67.7
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 1.4e-180 636.7 493 66.5
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 3.2e-180 635.6 382 79.3
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 2.1e-179 632.9 481 65.7
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 3.5e-179 632.1 388 77.8
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 4.6e-179 631.7 379 79.9
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 1.8e-178 629.8 373 79.6
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.8e-178 629.8 458 69.2
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 3.0e-178 629.0 379 79.4
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 5.1e-178 628.2 460 69.3
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 1.5e-177 626.7 371 79.2
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 1.9e-177 626.3 379 79.2
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 2.5e-177 625.9 468 68.8
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 2.5e-177 625.9 379 79.2
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 4.3e-177 625.2 379 78.9
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 4.3e-177 625.2 379 79.2
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 5.6e-177 624.8 467 68.1
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 1.4e-175 620.2 463 67.4
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.4e-175 620.2 467 67.9
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 2.4e-175 619.4 363 80.7
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 3.1e-175 619.0 486 64.4
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 9.0e-175 617.5 419 72.1
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 1.2e-174 617.1 389 77.1
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 1.2e-174 617.1 380 76.6
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 1.2e-174 617.1 389 76.9
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 1.2e-174 617.1 378 78.0
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 2.0e-174 616.3 469 66.1
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 2.0e-174 616.3 367 81.5
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 2.2e-173 612.8 462 67.7
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 2.9e-173 612.5 380 75.8
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 4.9e-173 611.7 490 62.7
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 6.4e-173 611.3 397 75.6
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 8.4e-173 610.9 462 67.5
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 1.9e-172 609.8 474 65.2
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 4.2e-172 608.6 397 75.3
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 2.1e-171 606.3 445 69.9
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 4.3e-169 598.6 513 60.8
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 5.6e-169 598.2 386 75.6
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 8.1e-168 594.3 389 74.8
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 3.1e-167 592.4 406 69.0
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 6.9e-167 591.3 472 64.8
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 9.0e-167 590.9 376 75.0
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 1.2e-166 590.5 565 56.6
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 4.5e-166 588.6 378 73.3
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 5.8e-166 588.2 379 76.0
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 1.0e-165 587.4 480 63.5
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 1.0e-165 587.4 462 65.6
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 8.4e-165 584.3 377 75.6
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 7.1e-164 581.3 472 65.3
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 7.4e-161 571.2 462 64.3
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 1.1e-159 567.4 368 75.0
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 7.2e-156 554.7 360 73.9
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 5.7e-153 545.0 309 80.3
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 1.3e-152 543.9 365 73.7
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 2.8e-152 542.7 308 80.2
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 2.8e-152 542.7 466 62.2
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 8.2e-152 541.2 431 63.8
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 1.8e-151 540.0 389 67.6
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.3e-149 533.9 363 70.2
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 4.6e-147 525.4 367 68.1
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 6.3e-144 515.0 469 59.1
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 6.3e-144 515.0 469 58.8
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 5.0e-141 505.4 286 81.5
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 6.3e-136 488.4 384 62.2
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 3.8e-133 479.2 389 61.7
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 6.7e-130 468.4 332 67.2
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 7.2e-124 448.4 353 59.2
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 1.6e-123 447.2 290 72.1
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.8e-114 417.2 294 63.6
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.0e-109 401.4 318 64.5
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 1.4e-103 380.9 244 73.4
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 6.2e-99 365.5 368 56.5
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 7.8e-94 348.6 236 71.2
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.6e-81 307.0 239 64.0
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.2e-73 281.6 204 59.8
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 7.6e-73 278.9 204 59.3
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.9e-72 276.9 204 59.3
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.9e-71 274.2 204 58.3
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 2.4e-71 273.9 341 44.6
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 3.2e-71 273.5 320 43.8
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 3.5e-54 216.9 210 52.9
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 7.6e-41 172.6 141 68.1
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.8e-34 151.4 98 64.3
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 9.7e-20 102.4 93 63.4
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 1.1e-15 89.0 84 61.9
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 1.8e-13 81.6 269 26.0
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 5.2e-13 80.1 274 25.5
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 8.8e-13 79.3 277 23.8
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 1.5e-12 78.6 269 23.0
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 2.6e-12 77.8 271 24.4
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 9.7e-12 75.9 271 24.0
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 1.3e-11 75.5 276 23.6
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 6.3e-11 73.2 277 23.5
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 6.3e-11 73.2 281 24.6
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 6.3e-11 73.2 156 33.3
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.1e-10 72.4 269 22.7
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 1.8e-10 71.6 276 23.2
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 2.4e-10 71.2 279 23.7
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 2.4e-10 71.2 279 23.7
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 2.4e-10 71.2 282 24.5
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 5.9e-09 66.6 269 22.7
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 1.0e-08 65.9 160 25.6
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 1.3e-08 65.5 271 22.1


User provided reference genes

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