Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07511 Nelumbo nucifera HOM05D001027 ORTHO05D000844 3.2e-52 208.0 96 100.0
Nn1g06048 Nelumbo nucifera HOM05D001027 ORTHO05D000844 4.4e-25 117.9 77 76.6
Nn1g04540 Nelumbo nucifera HOM05D001027 ORTHO05D000844 8.6e-21 103.6 73 74.0
Nn8g41043 Nelumbo nucifera HOM05D001027 ORTHO05D000844 5.4e-15 84.3 73 64.4
TAR376G0109 Trochodendron aralioides HOM05D001027 ORTHO05D000844 1.6e-14 82.8 73 58.9
TAR625G1229 Trochodendron aralioides HOM05D001027 ORTHO05D000844 3.5e-14 81.6 73 61.6
TAR628G1060 Trochodendron aralioides HOM05D001027 ORTHO05D000844 1.0e-13 80.1 73 60.3
vmacro01957 Vaccinium macrocarpon HOM05D001027 ORTHO05D000844 2.3e-13 79.0 73 57.5
Dinv15813 Davidia involucrata HOM05D001027 ORTHO05D000844 6.6e-13 77.4 60 66.7
CSS0012155 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 1.9e-12 75.9 60 65.0
Prupe.8G146200 Prunus persica HOM05D001027 ORTHO05D000844 2.5e-12 75.5 73 52.1
Dinv42238 Davidia involucrata HOM05D001027 ORTHO05D000844 3.3e-12 75.1 60 63.3
MBI18_g10585_MAGBIO Magnolia biondii HOM05D001027 ORTHO05D000844 3.3e-12 75.1 74 60.8
Lj9A328T39 Lonicera japonica HOM05D001027 ORTHO05D000844 5.6e-12 74.3 60 65.0
Rhsim11G0152500 Rhododendron simsii HOM05D001027 ORTHO05D000844 7.3e-12 73.9 60 63.3
CiPaw.06G165300 Carya illinoinensis HOM05D001027 ORTHO05D000844 9.6e-12 73.6 73 53.4
RhsimUnG0124200 Rhododendron simsii HOM05D001027 ORTHO05D000844 2.1e-11 72.4 60 61.7
CSS0022401 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 4.7e-11 71.2 60 63.3
CSS0034494 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 4.7e-11 71.2 60 63.3
Actinidia00365 Actinidia chinensis HOM05D001027 ORTHO05D000844 8.1e-11 70.5 60 63.3
Actinidia26783 Actinidia chinensis HOM05D001027 ORTHO05D000844 8.1e-11 70.5 60 63.3
Haze_10266 Corylus avellana HOM05D001027 ORTHO05D000844 8.1e-11 70.5 73 53.4
Hma1.2p1_0661F.1_g198170 Hydrangea macrophylla HOM05D001027 ORTHO05D000844 8.1e-11 70.5 73 50.7
CiPaw.05G018600 Carya illinoinensis HOM05D001027 ORTHO05D000844 1.4e-10 69.7 68 55.9
Dinv26937 Davidia involucrata HOM05D001027 ORTHO05D000844 1.8e-10 69.3 74 54.1
PSO541G0983 Papaver somniferum HOM05D001027 ORTHO05D000844 5.2e-10 67.8 79 49.4
THA.LOC104825384 Tarenaya hassleriana HOM05D001027 ORTHO05D000844 5.2e-10 67.8 58 55.2
ATR0681G363 Amborella trichopoda HOM05D001027 ORTHO05D000844 6.8e-10 67.4 74 54.1
MD10G1106900 Malus domestica HOM05D001027 ORTHO05D000844 1.5e-09 66.2 73 46.6
TWI14G1140 Tripterygium wilfordii HOM05D001027 ORTHO05D000844 1.5e-09 66.2 62 56.5
Glyma.15G135100 Glycine max HOM05D001027 ORTHO05D000844 2.6e-09 65.5 73 47.9
MD15G1298000 Malus domestica HOM05D001027 ORTHO05D000844 3.4e-09 65.1 60 56.7
Prupe.6G219800 Prunus persica HOM05D001027 ORTHO05D000844 3.4e-09 65.1 60 58.3
TWI59G0349 Tripterygium wilfordii HOM05D001027 ORTHO05D000844 3.4e-09 65.1 62 58.1
CDE08G1661 Ceratophyllum demersum HOM05D001027 ORTHO05D000844 4.4e-09 64.7 71 47.9
Lj5A219T45 Lonicera japonica HOM05D001027 ORTHO05D000844 4.4e-09 64.7 60 56.7
Glyma.09G029300 Glycine max HOM05D001027 ORTHO05D000844 5.8e-09 64.3 73 46.6
PSO675G7435 Papaver somniferum HOM05D001027 ORTHO05D000844 5.8e-09 64.3 79 46.8
GSVIVG01037816001 Vitis vinifera HOM05D001027 ORTHO05D000844 5.8e-09 64.3 74 48.6
arahy.Tifrunner.gnm1.ann1.1Y2NXV Arachis hypogaea HOM05D001027 ORTHO05D000844 7.6e-09 63.9 73 46.6
Lj7C99T13 Lonicera japonica HOM05D001027 ORTHO05D000844 9.9e-09 63.5 73 52.1
arahy.Tifrunner.gnm1.ann1.4L6GWX Arachis hypogaea HOM05D001027 ORTHO05D000844 1.3e-08 63.2 60 51.7
Phvul.006G123700 Phaseolus vulgaris HOM05D001027 ORTHO05D000844 1.3e-08 63.2 73 47.9
Carub.0001s3913 Capsella rubella HOM05D001027 ORTHO05D000844 1.7e-08 62.8 68 47.1
Haze_15277 Corylus avellana HOM05D001027 ORTHO05D000844 1.7e-08 62.8 73 54.8
Atru.chr5.2331 Acer truncatum HOM05D001027 ORTHO05D000844 2.2e-08 62.4 74 50.0
Duzib248G0855 Durio zibethinus HOM05D001027 ORTHO05D000844 2.2e-08 62.4 59 59.3
PGR102G1507 Punica granatum HOM05D001027 ORTHO05D000844 2.2e-08 62.4 60 53.3
HPP92_017715 Vanilla planifolia HOM05D001027 ORTHO05D000844 2.2e-08 62.4 74 45.9
Sc05g0004540 Simmondsia chinensis HOM05D001027 ORTHO05D000844 2.9e-08 62.0 73 49.3
DCAR_021950 Daucus carota HOM05D001027 ORTHO05D000844 3.8e-08 61.6 73 46.6
Lalb_Chr20g0120231 Lupinus albus HOM05D001027 ORTHO05D000844 3.8e-08 61.6 73 47.9
THA.LOC104815403 Tarenaya hassleriana HOM05D001027 ORTHO05D000844 3.8e-08 61.6 69 43.5
Peaxi162Scf00449g00319 Petunia axillaris HOM05D001027 ORTHO05D000844 4.9e-08 61.2 73 45.2
VMungo0540G1626 Vigna mungo HOM05D001027 ORTHO05D000844 4.9e-08 61.2 73 46.6
CARHR039980 Cardamine hirsuta HOM05D001027 ORTHO05D000844 6.4e-08 60.8 69 44.9
Duzib052G0250 Durio zibethinus HOM05D001027 ORTHO05D000844 6.4e-08 60.8 60 55.0
MSTRG.16676 Avicennia marina HOM05D001027 ORTHO05D000844 8.4e-08 60.5 59 54.2
Cpa.g.sc6.10 Carica papaya HOM05D001027 ORTHO05D000844 8.4e-08 60.5 75 53.3
Glyma.11G047300 Glycine max HOM05D001027 ORTHO05D000844 8.4e-08 60.5 60 55.0
CiPaw.01G004100 Carya illinoinensis HOM05D001027 ORTHO05D000844 1.1e-07 60.1 73 53.4
GSVIVG01002384001 Vitis vinifera HOM05D001027 ORTHO05D000844 1.1e-07 60.1 73 50.7
MSTRG.20221 Avicennia marina HOM05D001027 ORTHO05D000844 1.4e-07 59.7 59 52.5
Eucgr.I01053 Eucalyptus grandis HOM05D001027 ORTHO05D000844 1.4e-07 59.7 73 46.6
MD10G1107300 Malus domestica HOM05D001027 ORTHO05D000844 1.4e-07 59.7 73 43.8
CANSAT01G3285 Cannabis sativa HOM05D001027 ORTHO05D000844 1.9e-07 59.3 60 56.7
Ca_00922_v3 Cicer arietinum L. HOM05D001027 ORTHO05D000844 1.9e-07 59.3 74 45.9
MD02G1186900 Malus domestica HOM05D001027 ORTHO05D000844 1.9e-07 59.3 62 53.2
Lj6g0000325 Lotus japonicus HOM05D001027 ORTHO05D000844 2.4e-07 58.9 73 49.3
Aa31LG10G4180 Aethionema arabicum HOM05D001027 ORTHO05D000844 3.2e-07 58.5 68 44.1
AL1G57500 Arabidopsis lyrata HOM05D001027 ORTHO05D000844 3.2e-07 58.5 54 53.7
Manes.10G082400 Manihot esculenta HOM05D001027 ORTHO05D000844 3.2e-07 58.5 60 50.0
Manes.10G083455 Manihot esculenta HOM05D001027 ORTHO05D000844 3.2e-07 58.5 60 50.0
arahy.Tifrunner.gnm1.ann1.D4IBRE Arachis hypogaea HOM05D001027 ORTHO05D000844 4.2e-07 58.2 60 51.7
Ciclev10028926m.g Citrus clementina HOM05D001027 ORTHO05D000844 5.4e-07 57.8 76 53.9
Duzib147G1283 Durio zibethinus HOM05D001027 ORTHO05D000844 7.1e-07 57.4 74 52.7
unitig_46.g18838 Utricularia gibba HOM05D001027 ORTHO05D000844 7.1e-07 57.4 56 50.0
Cc02_g19920 Coffea canephora HOM05D001027 ORTHO05D000844 9.3e-07 57.0 59 49.2
Migut.B00451 Erythranthe guttata HOM05D001027 ORTHO05D000844 9.3e-07 57.0 59 49.2
Lsat_1_v5_gn_0_28181 Lactuca sativa HOM05D001027 ORTHO05D000844 9.3e-07 57.0 58 50.0
Lsat_1_v5_gn_5_113860 Lactuca sativa HOM05D001027 ORTHO05D000844 9.3e-07 57.0 58 51.7
Medtr2g031870 Medicago truncatula HOM05D001027 ORTHO05D000844 9.3e-07 57.0 72 45.8
Nitab4.5_0011076g0020 Nicotiana tabacum HOM05D001027 ORTHO05D000844 9.3e-07 57.0 73 46.6
Psat1g164560 Pisum sativum HOM05D001027 ORTHO05D000844 9.3e-07 57.0 73 45.2
Thecc.02G118200 Theobroma cacao HOM05D001027 ORTHO05D000844 9.3e-07 57.0 60 55.0
ClCG10G010150 Citrullus lanatus HOM05D001027 ORTHO05D000844 1.2e-06 56.6 73 41.1
Manes.13G111100 Manihot esculenta HOM05D001027 ORTHO05D000844 1.2e-06 56.6 74 48.6
AT1G49950 Arabidopsis thaliana HOM05D001027 ORTHO05D000844 1.6e-06 56.2 54 53.7
arahy.Tifrunner.gnm1.ann1.QPJJ3N Arachis hypogaea HOM05D001027 ORTHO05D000844 1.6e-06 56.2 60 50.0
QL06p039525 Quercus lobata HOM05D001027 ORTHO05D000844 1.6e-06 56.2 73 49.3
Sabra14G0004600 Salix brachista HOM05D001027 ORTHO05D000844 2.7e-06 55.5 60 55.0
Sabra14G0004900 Salix brachista HOM05D001027 ORTHO05D000844 2.7e-06 55.5 60 55.0
Sp1g36800 Schrenkiella parvula HOM05D001027 ORTHO05D000844 2.7e-06 55.5 68 41.2
Gohir.A11G214400 Gossypium hirsutum HOM05D001027 ORTHO05D000844 3.5e-06 55.1 74 51.4
Thhalv10011686m.g Eutrema salsugineum HOM05D001027 ORTHO05D000844 4.6e-06 54.7 69 42.0
Gohir.D02G203700 Gossypium hirsutum HOM05D001027 ORTHO05D000844 4.6e-06 54.7 73 45.2
Nitab4.5_0002040g0020 Nicotiana tabacum HOM05D001027 ORTHO05D000844 4.6e-06 54.7 73 46.6
unitig_37.g12798 Utricularia gibba HOM05D001027 ORTHO05D000844 4.6e-06 54.7 56 46.4
vmacro05413 Vaccinium macrocarpon HOM05D001027 ORTHO05D000844 4.6e-06 54.7 61 44.3
FAN28G0636 Fragaria x ananassa HOM05D001027 ORTHO05D000844 6.0e-06 54.3 57 52.6
Gohir.A03G182000 Gossypium hirsutum HOM05D001027 ORTHO05D000844 6.0e-06 54.3 73 45.2
Gorai.005G230800 Gossypium raimondii HOM05D001027 ORTHO05D000844 6.0e-06 54.3 73 45.2
Aa31LG8G6380 Aethionema arabicum HOM05D001027 ORTHO05D000844 7.8e-06 53.9 60 46.7
arahy.Tifrunner.gnm1.ann1.B6C3DF Arachis hypogaea HOM05D001027 ORTHO05D000844 7.8e-06 53.9 60 55.0
arahy.Tifrunner.gnm1.ann1.WDU6CI Arachis hypogaea HOM05D001027 ORTHO05D000844 7.8e-06 53.9 60 55.0
Lalb_Chr15g0088961 Lupinus albus HOM05D001027 ORTHO05D000844 7.8e-06 53.9 60 46.7
Manes.12G115100 Manihot esculenta HOM05D001027 ORTHO05D000844 7.8e-06 53.9 60 55.0
Sopen02g014730 Solanum pennellii HOM05D001027 ORTHO05D000844 7.8e-06 53.9 73 43.8
PGSC0003DMG400023131 Solanum tuberosum HOM05D001027 ORTHO05D000844 7.8e-06 53.9 58 46.6
PGSC0003DMG402003328 Solanum tuberosum HOM05D001027 ORTHO05D000844 7.8e-06 53.9 74 44.6


User provided reference genes

Program Settings