Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 9.9e-200 700.3 456 100.0
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.6e-112 410.6 505 48.5
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 4.3e-110 402.5 460 55.0
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 3.5e-104 382.9 490 48.6
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 3.5e-104 382.9 493 57.4
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 2.3e-103 380.2 473 56.7
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 1.6e-101 374.0 468 51.9
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 2.3e-100 370.2 485 50.1
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 5.2e-100 369.0 458 53.9
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 8.9e-100 368.2 461 50.8
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 9.9e-99 364.8 476 55.5
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 6.4e-98 362.1 458 51.5
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 7.1e-97 358.6 467 56.7
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.2e-96 357.8 481 50.1
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 2.7e-96 356.7 496 54.6
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 4.6e-96 355.9 496 55.0
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 1.0e-95 354.8 518 44.8
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.9e-94 350.5 469 54.2
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 2.5e-94 350.1 475 54.7
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 2.5e-94 350.1 482 57.7
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 7.3e-94 348.6 467 53.3
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 7.3e-94 348.6 477 54.7
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 1.2e-93 347.8 480 59.0
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 2.1e-93 347.1 463 49.0
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 2.8e-93 346.7 507 51.3
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 2.8e-93 346.7 460 54.3
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 2.8e-93 346.7 467 52.0
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.7e-93 345.9 465 48.2
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 4.7e-93 345.9 506 55.3
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 6.2e-93 345.5 475 54.9
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 1.1e-92 344.7 513 44.8
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.4e-92 344.4 469 53.3
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.1e-92 343.2 482 47.9
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 4.0e-92 342.8 503 49.1
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 4.0e-92 342.8 470 47.4
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 8.9e-92 341.7 487 45.8
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 2.0e-91 340.5 456 54.4
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 3.4e-91 339.7 484 48.6
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 3.4e-91 339.7 480 48.3
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 3.4e-91 339.7 504 53.8
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 4.4e-91 339.3 467 47.8
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.3e-90 337.8 477 54.1
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 1.7e-90 337.4 477 55.1
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.9e-89 334.0 478 51.3
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 3.2e-89 333.2 480 47.7
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 4.1e-89 332.8 480 47.7
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 5.4e-89 332.4 467 52.5
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 5.4e-89 332.4 489 45.0
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 7.1e-89 332.0 459 53.2
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 7.1e-89 332.0 475 45.1
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 9.2e-89 331.6 459 46.2
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 9.2e-89 331.6 470 53.6
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 1.6e-88 330.9 432 54.9
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.6e-88 329.3 478 53.6
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.6e-88 329.3 476 45.2
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 1.3e-87 327.8 512 51.6
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 2.3e-87 327.0 478 53.3
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.9e-87 326.2 478 54.4
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 3.3e-86 323.2 484 46.1
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 4.3e-86 322.8 496 50.2
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 1.2e-85 321.2 487 49.7
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 1.6e-85 320.9 458 55.0
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 2.1e-85 320.5 459 47.1
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 3.6e-85 319.7 417 55.9
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 2.4e-84 317.0 492 58.1
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 4.0e-84 316.2 475 46.1
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 4.4e-83 312.8 461 55.5
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 4.4e-83 312.8 530 47.2
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 5.8e-83 312.4 458 52.0
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.7e-82 310.8 487 50.9
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 4.9e-82 309.3 424 48.8
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 1.4e-81 307.8 507 57.6
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 3.2e-81 306.6 460 53.5
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 4.2e-81 306.2 474 45.6
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 1.6e-80 304.3 465 52.3
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 2.1e-80 303.9 474 49.8
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 2.7e-80 303.5 464 44.6
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 3.5e-80 303.1 467 52.0
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 4.6e-80 302.8 485 48.5
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 7.8e-80 302.0 458 53.9
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 1.0e-79 301.6 470 45.1
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.0e-79 301.6 486 46.3
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 8.7e-79 298.5 466 50.4
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.5e-78 297.7 469 47.5
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 1.9e-78 297.4 437 46.5
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 4.3e-78 296.2 463 45.1
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 7.3e-78 295.4 490 42.7
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 2.1e-77 293.9 465 49.9
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 2.8e-77 293.5 476 45.6
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 3.6e-77 293.1 479 47.4
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 8.1e-77 292.0 467 47.1
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 1.5e-75 287.7 486 49.0
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 2.9e-74 283.5 475 41.5
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 8.4e-74 282.0 463 45.4
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 1.4e-73 281.2 496 46.2
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 3.2e-73 280.0 473 43.3
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 7.1e-73 278.9 485 47.6
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 9.3e-73 278.5 437 53.1
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 3.5e-72 276.6 459 45.8
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 3.5e-72 276.6 467 41.5
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 6.0e-72 275.8 477 42.3
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 6.0e-72 275.8 479 45.7
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 1.3e-71 274.6 479 44.7
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.3e-71 273.9 416 44.5
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 6.2e-69 265.8 469 51.6
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 5.3e-68 262.7 193 72.0
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 7.6e-67 258.8 417 45.1
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 7.9e-64 248.8 175 74.3
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.9e-63 246.5 191 71.2
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 5.1e-63 246.1 471 39.9
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.6e-61 241.1 200 68.0
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 1.6e-61 241.1 175 71.4
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 3.4e-59 233.4 234 58.1
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 7.6e-59 232.3 496 42.9
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 8.4e-58 228.8 440 38.6
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 2.1e-56 224.2 495 38.6
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 3.9e-55 219.9 408 43.9
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 1.1e-54 218.4 363 52.1
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 2.8e-53 213.8 451 35.9
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.8e-52 211.1 416 38.2
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 5.3e-52 209.5 483 39.8
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 1.2e-48 198.4 392 43.6
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 6.1e-48 196.1 406 38.4
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 2.5e-41 174.1 129 69.8
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 2.8e-37 160.6 446 35.2
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 5.3e-36 156.4 431 33.6
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 1.2e-32 145.2 172 51.2
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.5e-30 138.3 211 45.0
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 5.7e-30 136.3 146 50.0
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 1.4e-28 131.7 155 47.7
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 7.0e-28 129.4 73 87.7
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 8.8e-23 112.5 93 62.4
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 3.3e-22 110.5 139 41.0
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.0e-18 99.0 97 57.7
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 3.2e-17 94.0 92 56.5
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 5.2e-15 86.7 127 44.9
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 1.5e-14 85.1 112 47.3
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 1.5e-14 85.1 112 47.3
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 3.4e-14 84.0 49 79.6
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 9.8e-14 82.4 60 70.0
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 2.3e-10 71.2 165 30.9
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 8.6e-10 69.3 69 56.5
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 8.6e-10 69.3 69 56.5
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 3.3e-09 67.4 69 55.1
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 6.1e-08 63.2 66 53.0


User provided reference genes

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