Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07188 Nelumbo nucifera HOM05D003504 ORTHO05D004006 0.0e+00 1508.4 745 100.0
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 0.0e+00 1158.3 724 79.3
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 0.0e+00 1146.0 723 78.4
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 0.0e+00 1114.0 714 77.3
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 0.0e+00 1106.7 723 75.5
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 0.0e+00 1103.6 723 75.7
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 0.0e+00 1097.4 724 76.7
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 0.0e+00 1095.9 724 76.5
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 0.0e+00 1094.3 724 76.7
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 0.0e+00 1090.5 718 76.3
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 0.0e+00 1088.9 719 75.7
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 0.0e+00 1082.0 696 76.9
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 0.0e+00 1078.2 718 74.5
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 0.0e+00 1077.0 713 74.8
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 1.5e-311 1072.4 718 74.0
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 1.6e-308 1062.4 718 74.4
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 2.8e-308 1061.6 725 73.4
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 5.2e-307 1057.4 718 74.0
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 7.5e-306 1053.5 718 73.7
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 4.9e-305 1050.8 717 73.6
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.1e-304 1049.7 718 73.5
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 4.1e-304 1047.7 718 72.8
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 1.6e-303 1045.8 726 72.6
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 3.5e-303 1044.6 723 73.0
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 1.1e-301 1039.6 694 75.4
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 1.6e-300 1035.8 725 70.3
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 3.6e-300 1034.6 707 74.1
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 2.3e-299 1031.9 723 71.0
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 4.0e-299 1031.2 721 71.4
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 4.4e-298 1027.7 723 71.0
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 4.4e-298 1027.7 723 71.9
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 7.5e-298 1026.9 693 74.3
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 1.7e-297 1025.8 694 74.5
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 1.9e-296 1022.3 723 70.1
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 1.6e-295 1019.2 693 74.3
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 4.6e-295 1017.7 693 74.0
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 9.5e-293 1010.0 692 73.8
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 1.6e-292 1009.2 692 73.7
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 4.0e-291 1004.6 718 71.6
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 8.9e-291 1003.4 723 70.7
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 1.2e-290 1003.0 696 72.8
CDE09G0759 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 1.5e-290 1002.7 723 70.5
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 1.5e-290 1002.7 696 72.6
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 2.0e-290 1002.3 694 73.3
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 5.8e-290 1000.7 692 73.3
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 7.6e-290 1000.3 718 71.3
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 4.9e-289 997.7 695 72.1
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 6.4e-289 997.3 695 71.9
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 8.4e-289 996.9 640 79.1
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 1.1e-288 996.5 724 69.6
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 4.6e-287 991.1 723 69.7
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 7.8e-287 990.3 696 71.1
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 2.3e-286 988.8 697 71.3
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 3.9e-286 988.0 698 71.1
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 5.1e-286 987.6 721 68.7
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 2.5e-285 985.3 717 70.3
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 7.3e-285 983.8 714 68.9
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 1.2e-284 983.0 721 68.4
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 1.6e-284 982.6 695 71.7
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 1.6e-284 982.6 695 71.7
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 6.2e-284 980.7 721 68.5
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 1.1e-283 979.9 718 68.5
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 1.4e-283 979.5 716 68.7
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 2.4e-283 978.8 694 72.0
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 3.1e-283 978.4 696 71.4
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 4.0e-283 978.0 694 71.8
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 6.9e-283 977.2 724 67.5
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 8.9e-283 976.9 722 69.3
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 1.5e-282 976.1 695 70.8
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 1.5e-282 976.1 721 68.4
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 1.3e-281 973.0 716 67.6
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 2.3e-278 962.2 696 69.7
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 3.0e-278 961.8 714 68.2
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 3.3e-277 958.4 696 69.3
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 3.3e-277 958.4 718 68.4
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 2.1e-276 955.7 726 66.8
SEGI_32993 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 3.6e-276 954.9 679 68.6
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 5.3e-275 951.0 714 67.2
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 6.9e-275 950.7 714 67.1
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 9.0e-275 950.3 640 75.2
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 1.2e-274 949.9 723 66.4
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 1.5e-274 949.5 707 69.2
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 7.6e-274 947.2 761 64.4
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 1.3e-273 946.4 697 69.7
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 3.8e-273 944.9 728 66.6
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 1.4e-272 943.0 694 69.6
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 1.9e-272 942.6 694 69.6
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 3.0e-270 935.3 771 62.8
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 1.3e-268 929.9 695 67.3
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 3.6e-268 928.3 695 67.2
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 6.2e-268 927.5 692 69.1
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 1.1e-267 926.8 803 61.8
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.4e-267 926.4 784 62.9
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 1.5e-261 906.4 695 66.0
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 6.2e-260 901.0 694 66.9
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 2.5e-256 889.0 695 65.5
vmacro15989 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 2.3e-254 882.5 593 74.4
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 2.7e-247 859.0 725 61.4
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 1.8e-246 856.3 725 62.2
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 3.6e-239 832.0 695 62.3
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 5.1e-238 828.2 727 58.7
CSS0042974 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 7.4e-237 824.3 569 72.8
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 7.2e-232 807.7 726 57.0
Nitab4.5_0001070g0110 Nicotiana tabacum HOM05D003504 ORTHO05D004006 3.7e-228 795.4 617 65.3
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 7.2e-224 781.2 744 54.4
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 9.4e-224 780.8 756 53.6
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.7e-223 779.2 742 54.3
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 8.0e-223 777.7 755 54.0
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.3e-220 770.4 731 53.9
Solyc08g016070.3 Solanum lycopersicum HOM05D003504 ORTHO05D004006 6.3e-220 768.1 571 68.1
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 5.0e-217 758.4 727 53.1
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 8.6e-209 731.1 463 78.6
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 2.0e-205 719.9 727 53.5
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 5.6e-200 701.8 696 51.6
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 1.7e-193 680.2 462 75.1
Sc15g0007430 Simmondsia chinensis HOM05D003504 ORTHO05D004006 5.8e-165 585.5 462 66.5
Ca_24186_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 1.3e-137 494.6 433 61.0
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 1.2e-117 428.3 672 40.3
Zm00001eb391790 Zea mays HOM05D003504 ORTHO05D004006 5.0e-116 422.9 494 48.2
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 2.8e-103 380.6 351 57.5
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 2.2e-95 354.4 389 51.7
Lj6C705G6 Lonicera japonica HOM05D003504 ORTHO05D004006 8.3e-95 352.4 336 56.0
Ca_24185_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 1.5e-56 225.3 137 76.6
RcHm_v2.0_Chr5g0024291 Rosa chinensis HOM05D003504 ORTHO05D004006 5.8e-56 223.4 156 69.2
CSS0012196 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 3.8e-55 220.7 117 91.5
Zm00001eb110210 Zea mays HOM05D003504 ORTHO05D004006 2.1e-53 214.9 131 80.2
Zm00001eb113250 Zea mays HOM05D003504 ORTHO05D004006 8.1e-42 176.4 114 73.7
AagrBONN_evm.TU.Sc2ySwM_344.764 Anthoceros agrestis HOM05D003504 ORTHO05D004006 5.3e-41 173.7 121 68.6
Zm00001eb389000 Zea mays HOM05D001423 ORTHO05D004006 1.2e-37 162.5 136 62.5
Zm00001eb265700 Zea mays HOM05D003504 ORTHO05D004006 3.5e-37 161.0 136 61.8
Zm00001eb145990 Zea mays HOM05D003504 ORTHO05D004006 5.6e-35 153.7 134 62.7
Psat0s1032g0040 Pisum sativum HOM05D003504 ORTHO05D004006 1.3e-28 132.5 80 72.5
Cpa.g.sc34.44 Carica papaya HOM05D003504 ORTHO05D004006 1.2e-21 109.4 108 59.3
CBR_g22316 Chara braunii HOM05D003504 ORTHO05D004006 6.1e-21 107.1 143 37.8
SHI02262 Sapria himalayana HOM05D003504 ORTHO05D004006 4.8e-18 97.4 84 56.0
Zm00001eb373750 Zea mays HOM05D009386 ORTHO05D011419 4.5e-16 90.9 80 61.2
Solyc08g016060.1 Solanum lycopersicum HOM05D003504 ORTHO05D004006 7.7e-16 90.1 53 86.8
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 1.3e-15 89.4 57 77.2
Nitab4.5_0001070g0090 Nicotiana tabacum HOM05D003504 ORTHO05D004006 2.2e-15 88.6 53 84.9
vmacro15990 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 3.8e-15 87.8 49 91.8
SHI02263 Sapria himalayana HOM05D003504 ORTHO05D004006 5.0e-15 87.4 100 52.0
Ca_24184_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 1.1e-14 86.3 55 81.8
Cpa.g.sc3151.1 Carica papaya HOM05D003504 ORTHO05D004006 3.2e-14 84.7 98 50.0
Zm00001eb292470 Zea mays HOM05D001423 ORTHO05D000709 3.2e-14 84.7 108 49.1
Zm00001eb412430 Zea mays HOM05D003504 ORTHO05D004006 7.2e-14 83.6 88 54.5
SEGI_08102 Sequoiadendron giganteum HOM05D017310 ORTHO05D004006 1.0e-12 79.7 91 45.1
Peaxi162Scf00280g00008 Petunia axillaris HOM05D003504 ORTHO05D004006 3.9e-12 77.8 47 83.0
ClCG03G013860 Citrullus lanatus HOM05D003504 ORTHO05D004006 6.7e-12 77.0 71 53.5
Zm00001eb016900 Zea mays HOM05D009386 ORTHO05D011419 3.3e-11 74.7 65 58.5
SEGI_26038 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 4.3e-11 74.3 61 55.7
SHI02261 Sapria himalayana HOM05D003504 ORTHO05D004006 7.4e-11 73.6 73 50.7
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 7.4e-11 73.6 81 50.6
SHI02260 Sapria himalayana HOM05D003504 ORTHO05D004006 6.3e-10 70.5 53 54.7
SEGI_22890 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 3.1e-09 68.2 58 53.4
AagrBONN_evm.TU.Sc2ySwM_340.609 Anthoceros agrestis HOM05D003504 ORTHO05D004006 5.5e-06 57.4 110 37.3


User provided reference genes

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