Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 1.1e-22 109.0 53 100.0
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 1.1e-17 92.4 52 82.7
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 1.1e-17 92.4 51 84.3
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 1.1e-17 92.4 49 87.8
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 1.4e-17 92.0 49 87.8
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 1.4e-17 92.0 49 87.8
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 1.9e-17 91.7 49 87.8
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 1.9e-17 91.7 49 87.8
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 1.9e-17 91.7 49 85.7
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 1.9e-17 91.7 49 85.7
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 1.9e-17 91.7 49 87.8
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 1.9e-17 91.7 49 85.7
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 1.9e-17 91.7 49 87.8
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 1.9e-17 91.7 49 87.8
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 1.9e-17 91.7 49 85.7
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 1.9e-17 91.7 49 87.8
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 2.4e-17 91.3 49 85.7
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.4e-17 91.3 49 85.7
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.4e-17 91.3 49 85.7
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 3.2e-17 90.9 49 85.7
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 3.2e-17 90.9 52 78.8
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 3.2e-17 90.9 49 85.7
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 3.2e-17 90.9 49 85.7
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 3.2e-17 90.9 49 85.7
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 3.2e-17 90.9 49 85.7
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 3.2e-17 90.9 49 85.7
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 4.2e-17 90.5 49 85.7
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 4.2e-17 90.5 49 83.7
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 4.2e-17 90.5 49 83.7
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 4.2e-17 90.5 49 83.7
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 4.2e-17 90.5 49 83.7
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 5.4e-17 90.1 52 78.8
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 5.4e-17 90.1 49 85.7
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 7.1e-17 89.7 49 85.7
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 9.3e-17 89.4 49 83.7
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 9.3e-17 89.4 49 83.7
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 9.3e-17 89.4 49 83.7
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 9.3e-17 89.4 49 83.7
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 9.3e-17 89.4 49 83.7
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 9.3e-17 89.4 49 83.7
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 9.3e-17 89.4 49 83.7
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 9.3e-17 89.4 49 83.7
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 9.3e-17 89.4 49 83.7
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 9.3e-17 89.4 49 83.7
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 1.2e-16 89.0 49 83.7
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 1.2e-16 89.0 51 80.4
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 1.6e-16 88.6 49 83.7
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 1.6e-16 88.6 49 83.7
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.6e-16 88.6 49 83.7
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 1.6e-16 88.6 49 83.7
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 1.6e-16 88.6 49 85.7
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 1.6e-16 88.6 49 83.7
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 2.1e-16 88.2 49 81.6
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 2.1e-16 88.2 49 81.6
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 2.1e-16 88.2 49 81.6
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 2.1e-16 88.2 48 85.4
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 2.1e-16 88.2 49 81.6
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 2.1e-16 88.2 49 83.7
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 2.1e-16 88.2 49 81.6
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 2.7e-16 87.8 52 76.9
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 3.5e-16 87.4 52 78.8
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 4.6e-16 87.0 49 83.7
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 4.6e-16 87.0 49 83.7
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 6.0e-16 86.7 49 79.6
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 6.0e-16 86.7 49 81.6
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 6.0e-16 86.7 49 79.6
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 7.9e-16 86.3 47 85.1
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 7.9e-16 86.3 47 85.1
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 7.9e-16 86.3 49 79.6
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 7.9e-16 86.3 49 81.6
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 7.9e-16 86.3 49 81.6
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 7.9e-16 86.3 49 81.6
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 7.9e-16 86.3 49 81.6
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 1.0e-15 85.9 47 83.0
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.0e-15 85.9 49 81.6
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 1.0e-15 85.9 49 81.6
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 1.0e-15 85.9 49 81.6
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 1.3e-15 85.5 49 79.6
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 1.3e-15 85.5 47 85.1
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 1.8e-15 85.1 49 79.6
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 1.8e-15 85.1 49 79.6
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 1.8e-15 85.1 49 81.6
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 2.3e-15 84.7 49 79.6
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 2.3e-15 84.7 49 79.6
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 2.3e-15 84.7 49 79.6
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 2.3e-15 84.7 49 79.6
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 2.3e-15 84.7 49 79.6
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 2.3e-15 84.7 49 79.6
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 2.3e-15 84.7 49 79.6
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 2.3e-15 84.7 49 79.6
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 2.3e-15 84.7 47 80.9
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 3.0e-15 84.3 49 79.6
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 3.0e-15 84.3 49 81.6
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 3.0e-15 84.3 49 79.6
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 3.9e-15 84.0 49 79.6
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 3.9e-15 84.0 49 79.6
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 5.1e-15 83.6 47 80.9
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 6.7e-15 83.2 49 77.6
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 1.1e-14 82.4 47 80.9
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 1.9e-14 81.6 51 74.5
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 3.3e-14 80.9 47 78.7
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 4.3e-14 80.5 47 78.7
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 7.4e-14 79.7 48 77.1
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 1.6e-13 78.6 46 80.4
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 2.1e-13 78.2 47 74.5
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 2.1e-13 78.2 45 82.2
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 3.7e-13 77.4 44 84.1
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 3.1e-12 74.3 45 80.0
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 6.9e-12 73.2 52 67.3
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 1.3e-10 68.9 45 73.3
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 1.6e-08 62.0 33 87.9
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 1.8e-07 58.5 35 77.1


User provided reference genes

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