Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 1.5e-190 669.5 359 100.0
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 7.4e-150 534.3 360 80.0
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 4.8e-141 505.0 360 76.9
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 4.1e-140 501.9 363 77.4
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 3.4e-139 498.8 361 77.0
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.3e-138 496.9 348 77.6
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 2.2e-138 496.1 362 75.1
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 2.9e-138 495.7 346 77.7
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 7.2e-137 491.1 362 75.4
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 9.4e-137 490.7 365 75.6
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 1.6e-136 490.0 368 74.7
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 3.6e-136 488.8 349 75.6
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 1.4e-135 486.9 362 76.0
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 6.7e-135 484.6 316 83.9
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 8.8e-135 484.2 361 75.3
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 2.6e-134 482.6 346 77.5
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 5.7e-134 481.5 361 72.9
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 1.7e-133 479.9 361 74.5
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 3.7e-133 478.8 361 73.4
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 3.7e-133 478.8 327 79.5
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 4.8e-133 478.4 343 74.3
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 4.8e-133 478.4 364 73.9
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 8.2e-133 477.6 361 75.6
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 1.4e-132 476.9 361 73.1
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 5.3e-132 474.9 360 74.7
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 7.0e-132 474.6 361 74.8
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 1.2e-131 473.8 354 74.0
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 1.2e-131 473.8 360 72.2
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 2.0e-131 473.0 361 74.5
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 2.0e-131 473.0 361 74.5
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 3.5e-131 472.2 360 71.7
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 4.5e-131 471.9 376 70.2
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 1.0e-130 470.7 344 73.5
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 1.3e-130 470.3 376 70.2
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 4.7e-128 461.8 361 73.4
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 2.3e-127 459.5 320 77.8
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 3.0e-127 459.1 348 72.4
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 3.9e-127 458.8 362 72.1
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 6.7e-127 458.0 298 81.9
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 1.1e-126 457.2 361 71.5
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.1e-126 457.2 382 69.1
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 2.6e-126 456.1 363 71.9
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 5.7e-126 454.9 344 72.7
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 1.7e-125 453.4 353 73.4
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 2.2e-125 453.0 353 73.1
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 2.2e-125 453.0 351 73.8
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 2.8e-125 452.6 264 90.9
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 2.8e-125 452.6 350 71.1
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 3.7e-125 452.2 351 73.8
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 8.2e-125 451.1 361 70.9
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 1.8e-124 449.9 356 72.8
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 2.4e-124 449.5 294 82.7
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 3.1e-124 449.1 347 73.2
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 4.1e-124 448.7 298 81.9
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 5.3e-124 448.4 348 71.0
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 5.3e-124 448.4 353 72.0
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 5.3e-124 448.4 331 74.9
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 5.3e-124 448.4 351 72.9
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 1.2e-123 447.2 354 71.2
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 1.6e-123 446.8 348 71.6
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 2.0e-123 446.4 353 72.2
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 2.6e-123 446.0 338 74.9
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 2.6e-123 446.0 298 81.5
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 5.9e-123 444.9 354 71.2
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 7.7e-123 444.5 346 72.3
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 7.7e-123 444.5 359 70.8
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 1.0e-122 444.1 359 70.8
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 1.0e-122 444.1 268 88.8
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 1.0e-122 444.1 291 80.4
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 2.2e-122 443.0 315 76.8
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 2.9e-122 442.6 311 77.2
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 2.9e-122 442.6 329 75.4
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 5.0e-122 441.8 284 84.9
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 1.1e-121 440.7 290 80.3
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 1.2e-120 437.2 265 89.1
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 1.6e-120 436.8 347 72.0
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 3.6e-120 435.6 311 75.9
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 4.7e-120 435.3 335 72.5
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 1.4e-119 433.7 375 66.7
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 2.3e-119 433.0 385 65.2
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 1.7e-117 426.8 324 73.1
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 9.1e-116 421.0 328 74.7
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 1.7e-114 416.8 294 76.5
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 5.0e-114 415.2 326 73.0
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.9e-113 413.3 348 67.5
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.6e-112 410.2 350 68.0
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 4.0e-111 405.6 312 74.7
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 6.8e-111 404.8 286 76.6
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 3.4e-110 402.5 289 76.5
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 1.3e-109 400.6 302 72.5
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 4.8e-109 398.7 414 58.0
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 2.4e-108 396.4 303 74.3
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 1.3e-106 390.6 303 72.6
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 5.5e-105 385.2 300 70.7
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 8.0e-104 381.3 337 66.2
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 1.4e-103 380.6 327 69.1
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 4.0e-103 379.0 327 68.8
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 3.4e-102 375.9 261 77.0
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 4.4e-102 375.6 261 75.9
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.8e-100 370.2 223 87.4
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 6.6e-98 361.7 267 72.7
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 2.8e-96 356.3 303 64.7
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 1.3e-90 337.4 359 57.4
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 6.6e-90 335.1 196 89.3
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 8.6e-90 334.7 289 67.1
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 5.2e-87 325.5 240 72.9
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 4.1e-84 315.8 218 79.4
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 1.3e-82 310.8 254 66.1
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 2.3e-79 300.1 304 59.5
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 3.4e-78 296.2 247 67.2
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 3.8e-69 266.2 244 58.2
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 1.9e-68 263.8 303 51.5
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 3.1e-63 246.5 234 64.5
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 4.9e-61 239.2 258 56.6
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 6.4e-61 238.8 283 50.5
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 2.1e-59 233.8 168 74.4
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 6.6e-58 228.8 233 62.2
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 1.1e-49 201.4 135 78.5
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 1.6e-48 197.6 140 80.0
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 2.1e-40 170.6 98 90.8
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 5.8e-38 162.5 142 69.0
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 3.8e-37 159.8 204 54.4
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 7.9e-35 152.1 93 86.0
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 5.7e-33 146.0 183 52.5
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 3.7e-32 143.3 157 56.7
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 1.1e-31 141.7 157 56.1
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 2.1e-19 100.9 80 68.8
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 1.3e-16 91.7 96 57.3
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 1.1e-15 88.6 60 75.0
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 4.2e-12 76.6 225 32.4
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 3.0e-10 70.5 47 72.3
MBI07_g21055_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 2.0e-06 57.8 41 75.6
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 4.5e-06 56.6 29 100.0


User provided reference genes

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